Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F48 I1 R1
|
115 |
87.5 |
3003888 |
99.1% |
2976853 |
139.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
408,727 |
C→A |
pseudogene (119/342 nt) |
ykiA → |
DUF2773 domain‑containing protein YkiA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 408,727 | 0 | C | A | 99.3%
| 493.3
/ NA
| 138 | pseudogene (119/342 nt) | ykiA | DUF2773 domain‑containing protein YkiA |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base A (59/78); total (59/79) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 139 total aligned reads displayed.
TATCAGTGAAGATCTCCAGATATTGTTGCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCCGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTAAAAGAGGATCCATCATTACTCTTATTTGTCGAACAACCC > NC_000913/408591‑408860
|
tatCAGTGAAGATCTCCAGATATTGTTGCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGc > 1:197804/1‑140 (MQ=255)
tatCAGTGAAGATCTCCAGATATTGTTGCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGc > 1:341932/1‑140 (MQ=255)
atCAGTGAAGATCTCCAGATATTGTTGCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCg < 1:1482059/140‑1 (MQ=255)
cAGTGAAGATCTCCAGATATTGTTGCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCgtt > 1:306340/1‑140 (MQ=255)
cAGTGAAGATCTCCAGATATTGTTGCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCgtt > 1:74617/1‑140 (MQ=255)
aGTGAAGATCTCCAGATATTGTTGCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCgttt > 2:767296/1‑139 (MQ=255)
aGTGAAGATCTCCAGATATTGTTGCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCgttt > 2:1272479/1‑139 (MQ=255)
aGTGAAGATCTCCAGATATTGTTGCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCgttt > 2:519836/1‑139 (MQ=255)
aGTGAAGATCTCCAGATATTGTTGCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCgttg > 2:1394160/1‑140 (MQ=255)
aGTGAAGATCTCCAGATATTGTTGCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCgttg > 2:1069969/1‑140 (MQ=255)
aGTGAAGATCTCCAGATATTGTTGCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCgttg > 2:1053516/1‑140 (MQ=255)
aGTGAAGATCTCCAGATATTGTTGCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCgttg > 1:518146/1‑140 (MQ=255)
gTGAAGATCTCCAGATATTGTTGCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCgttgt > 1:1352196/1‑140 (MQ=255)
tGAAGATCTCCAGATATTGTTGCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCgttgtt > 2:258408/1‑140 (MQ=255)
tGAAGATCTCCAGATATTGTTGCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCgttgtt < 1:1069969/140‑1 (MQ=255)
aaGATCTCCAGATATTGTTGCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCgttgttgt > 1:754880/1‑140 (MQ=255)
aTCTCCAGATATTGTTGCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTaa > 2:208272/1‑140 (MQ=255)
tcCAGATATTGTTGCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGa > 1:859507/1‑140 (MQ=255)
gATATTGTTGCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACAtt > 2:305859/1‑140 (MQ=255)
tatTGTTGCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGa > 1:179019/1‑140 (MQ=255)
ttgttgCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACt < 1:519836/140‑1 (MQ=255)
tgttgCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCCGGCGTTGTTGTTAACGACATTGACTg < 2:829010/140‑1 (MQ=255)
tgttgCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACt > 1:649814/1‑139 (MQ=255)
tgttgCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACt < 2:649814/139‑1 (MQ=255)
tgttgCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTg < 2:1243057/140‑1 (MQ=255)
tgttgCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTg < 1:1053516/140‑1 (MQ=255)
tgttgCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTg < 2:467151/140‑1 (MQ=255)
tgttgCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTg < 2:1327734/140‑1 (MQ=255)
tgttgCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTg < 2:859507/140‑1 (MQ=255)
tgttgCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTg < 2:265219/140‑1 (MQ=255)
tgttgCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTg < 2:283020/140‑1 (MQ=255)
gttgCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGa < 1:1272786/140‑1 (MQ=255)
gCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGAc < 1:1250509/134‑1 (MQ=255)
cGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCt < 1:696498/140‑1 (MQ=255)
gAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCa > 2:599973/1‑140 (MQ=255)
gCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCg > 1:195470/1‑140 (MQ=255)
gCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCg > 1:481882/1‑140 (MQ=255)
gCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCg > 2:1324593/1‑140 (MQ=255)
cGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCg < 2:341932/140‑1 (MQ=255)
gATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGc < 2:698739/140‑1 (MQ=255)
gATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGc < 2:518146/140‑1 (MQ=255)
tAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTg < 1:1394160/140‑1 (MQ=255)
aaaaGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTgg < 1:584045/140‑1 (MQ=255)
aaGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCt > 2:566984/1‑140 (MQ=255)
aaGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCt < 2:650038/140‑1 (MQ=255)
aaGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCt < 1:1324593/140‑1 (MQ=255)
aaGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCt < 2:74617/140‑1 (MQ=255)
aaGATAAATCAGATGATGAATGGTGGCATGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCt < 2:317161/140‑1 (MQ=255)
aaaTCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGCTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATtaa < 2:1193466/140‑1 (MQ=255)
aTCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATtaata > 2:1161927/1‑140 (MQ=255)
atgatgAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCca > 2:1120258/1‑140 (MQ=255)
tgatgaATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCcac < 2:197804/140‑1 (MQ=255)
atgaATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAg < 1:335751/140‑1 (MQ=255)
tgaATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAgc > 1:245600/1‑140 (MQ=255)
gCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCg > 1:986634/1‑140 (MQ=255)
cGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGa > 1:1356396/1‑140 (MQ=255)
cGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGa < 1:208272/140‑1 (MQ=255)
cGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGa > 1:1452036/1‑140 (MQ=255)
cGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGa > 2:1490407/1‑140 (MQ=255)
tGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGAtg > 1:676158/1‑140 (MQ=255)
tGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCCATTAATAATCCACAGCTGGCTGCCGAtg > 2:1445831/1‑140 (MQ=255)
cAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGc < 2:1467678/140‑1 (MQ=255)
cAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGc < 2:1452036/140‑1 (MQ=255)
cAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGc < 1:712731/140‑1 (MQ=255)
cAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGc < 2:306340/140‑1 (MQ=255)
cAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGc < 2:48183/140‑1 (MQ=255)
cAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGc < 2:747568/140‑1 (MQ=255)
aaGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGt < 1:577525/140‑1 (MQ=255)
aaGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGt < 1:1490407/140‑1 (MQ=255)
tCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGt < 2:245600/140‑1 (MQ=255)
tCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGt > 2:295973/1‑140 (MQ=255)
gCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTa > 2:74178/1‑140 (MQ=255)
gCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTa > 2:1121834/1‑140 (MQ=255)
gCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTa > 2:1253539/1‑140 (MQ=255)
gCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTa > 1:44032/1‑140 (MQ=255)
aaTGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTaaa < 1:279119/140‑1 (MQ=255)
aTGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGTGTGGTTaaaa < 1:305859/140‑1 (MQ=255)
aTGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTaaaa < 2:1271008/140‑1 (MQ=255)
aTGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTaaaa < 2:585654/140‑1 (MQ=255)
aTGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTaaaa < 1:767296/140‑1 (MQ=255)
tGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTAAAag < 2:356525/140‑1 (MQ=255)
agATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTAAAag < 2:881367/139‑1 (MQ=255)
gATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTAAAaga < 1:1253539/140‑1 (MQ=255)
cATTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTAAAAGAGGa < 2:1371422/140‑1 (MQ=255)
aTTTACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTAAAAGAGGAt < 2:673646/140‑1 (MQ=255)
tttACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTAAAAGAGGATc < 1:286225/140‑1 (MQ=255)
tttACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTAAAAGAGGATc < 1:1161927/140‑1 (MQ=255)
tttACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTAAAAGAGGATc < 2:849045/140‑1 (MQ=255)
tttACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAAGATCAGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTAAAAGAGGATc < 2:878236/140‑1 (MQ=255)
attACGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTAAAAGAGGATc < 1:447202/139‑1 (MQ=255)
aCGCCAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTAAAAGAGGATCcat < 2:10181/140‑1 (MQ=255)
ccAAACGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTAAAAGAGGATCcatcat < 1:1272479/140‑1 (MQ=255)
aaaCGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTAAAAGAGGATCCATCATTa > 2:342670/1‑140 (MQ=255)
aaaCGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTAAAAGAGGATCCATCATTa < 1:239468/140‑1 (MQ=255)
aaaCGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTAAAAGAGGATCCATCATTa < 2:800713/140‑1 (MQ=255)
aaCGGCATTGCGCAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTAAAAGAGGATCCATCATTAc > 1:321099/1‑140 (MQ=255)
cAACGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTAAAAGAGGATCCATCATTACTCTTATTTGTCg < 1:295973/140‑1 (MQ=255)
aCGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTAAAAGAGGATCCATCATTACTCTTATTTGTCGaa < 2:640625/140‑1 (MQ=255)
aCGCACATACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTAAAAGAGGATCCATCATTACTCTTATTTGTCGaa < 1:734054/140‑1 (MQ=255)
aTACCCAGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTAAAAGAGGATCCATCATTACTCTTATTTGTCGAACAAccc > 1:1246631/1‑140 (MQ=255)
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TATCAGTGAAGATCTCCAGATATTGTTGCGGAACTGGCTACGATAAAAGATAAATCAGATGATGAATGGTGGCGTGCATTGCTGCAAAGTCGCAATGATCATTTACGCCAAACGGCATTGCGCAACGCACATACCCCGGCGTTGTTGTTAACGACATTGACTGAGCCTCAGGATCGGTCGCTGGCTATTAATAATCCACAGCTGGCTGCCGATGTGAAAACGGCGTGGTTAAAAGAGGATCCATCATTACTCTTATTTGTCGAACAACCC > NC_000913/408591‑408860
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
