Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A15 F48 I1 R1	115	87.5	3003888	99.1%	2976853	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	528,727	C→A	pseudogene (88/491 nt)	ybbD →	putative uncharacterized protein YbbD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	528,727	0	C	A	100.0%	440.6 / NA	120	pseudogene (88/491 nt)	ybbD	putative uncharacterized protein YbbD
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (52/68); total (52/68)

Only 100 of 120 total aligned reads displayed.

AGTGATTATATTAATCCAGAGCATAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATCTTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACA  >  NC_000913/528591‑528861

  tGATTATATTAATCCAGAGCATAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATAtttat                                                                                                                                   >  1:561498/1‑140 (MQ=255)

      tataTTAATCCAGAGCATAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATAtt                                                                                                                                      >  1:781974/1‑133 (MQ=255)

      tataTTAATCCAGAGCATAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATttatttat                                                                                                                               >  1:726168/1‑140 (MQ=255)

      tataTTAATCCAGAGCATAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATttatttat                                                                                                                               >  2:1027650/1‑140 (MQ=255)

      tataTTAATCCAGAGCATAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATttatttat                                                                                                                               >  2:1478691/1‑140 (MQ=255)

      tataTTAATCCAGAGCATAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATttatttat                                                                                                                               >  2:829541/1‑140 (MQ=255)

       atatTAATCCAGAGCATAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTtata                                                                                                                              >  2:1154643/1‑140 (MQ=255)

         atTAATCCAGAGCATAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACa                                                                                                                            <  2:1485687/140‑1 (MQ=255)

         atTAATCCAGAGCATAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACa                                                                                                                            <  1:162664/140‑1 (MQ=255)

           tAATCCAGAGCATAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACaaa                                                                                                                          >  1:1395041/1‑140 (MQ=255)

             aTCCAGAGCATAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGa                                                                                                                        <  2:538536/140‑1 (MQ=255)

             aTCCAGAGCATAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGa                                                                                                                        <  1:277473/140‑1 (MQ=255)

               ccAGAGCATAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGAtt                                                                                                                      >  2:231312/1‑139 (MQ=255)

                 agagCATAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGaa                                                                                                                    <  1:6855/140‑1 (MQ=255)

                  gagCATAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAAt                                                                                                                   >  2:1482011/1‑140 (MQ=255)

                  gagCATAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAAt                                                                                                                   >  1:1009888/1‑140 (MQ=255)

                   agCATAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAAtt                                                                                                                  >  2:516870/1‑139 (MQ=255)

                   agCATAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAAtc                                                                                                                  >  1:247082/1‑140 (MQ=255)

                   agCATAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAAtc                                                                                                                  >  1:675479/1‑140 (MQ=255)

                   agCATAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAAtc                                                                                                                  >  1:44227/1‑140 (MQ=255)

                     cATAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAAtctc                                                                                                                >  1:1464622/1‑140 (MQ=255)

                      aTAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATctct                                                                                                               <  2:142108/140‑1 (MQ=255)

                      aTAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATctct                                                                                                               <  1:231312/140‑1 (MQ=255)

                      aTAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATctct                                                                                                               <  1:145743/140‑1 (MQ=255)

                       tAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCtt                                                                                                              >  1:1032873/1‑140 (MQ=255)

                        aaaaaaaCGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTg                                                                                                             <  2:267390/140‑1 (MQ=255)

                           aaaaCGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTgtaa                                                                                                          <  2:44227/140‑1 (MQ=255)

                             aaCGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTgtaagt                                                                                                        <  2:318199/140‑1 (MQ=255)

                             aaCGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTgtaagt                                                                                                        <  2:631305/140‑1 (MQ=255)

                              aCGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTgtaagta                                                                                                       <  2:1095971/140‑1 (MQ=255)

                                 aTAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAAc                                                                                                    <  2:1395041/140‑1 (MQ=255)

                                 aTAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAAc                                                                                                    <  2:1213869/140‑1 (MQ=255)

                                 aTAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAAc                                                                                                    <  2:561498/140‑1 (MQ=255)

                                 aTAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAAc                                                                                                    <  1:45685/140‑1 (MQ=255)

                                 aTAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAAc                                                                                                    <  1:1464533/140‑1 (MQ=255)

                                  tAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACa                                                                                                   <  1:1093359/140‑1 (MQ=255)

                                  tAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACa                                                                                                   <  2:1243698/140‑1 (MQ=255)

                                  aaaaaGCTTTTCAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACa                                                                                                   <  2:645982/139‑1 (MQ=255)

                                  aaaaGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACa                                                                                                   <  2:1307141/139‑1 (MQ=255)

                                   aaaGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACAt                                                                                                  <  1:1154643/140‑1 (MQ=255)

                                      ggCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTAc                                                                                               <  1:335586/140‑1 (MQ=255)

                                         tttACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATa                                                                                            <  2:1470247/140‑1 (MQ=255)

                                         tttACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATa                                                                                            <  2:1464622/140‑1 (MQ=255)

                                         tttACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATa                                                                                            <  1:1027650/140‑1 (MQ=255)

                                         tttACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATa                                                                                            <  2:355513/140‑1 (MQ=255)

                                         tttACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATa                                                                                            <  1:1478691/140‑1 (MQ=255)

                                         tttACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATa                                                                                            <  1:1482011/140‑1 (MQ=255)

                                         tttACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATa                                                                                            <  1:516870/140‑1 (MQ=255)

                                           tACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGCTAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATaaa                                                                                          <  2:1330390/140‑1 (MQ=255)

                                               aGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACtat                                                                                      <  1:602826/140‑1 (MQ=255)

                                                 aTGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTatat                                                                                    >  2:1382390/1‑140 (MQ=255)

                                                   gCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATgg                                                                                  >  2:419552/1‑140 (MQ=255)

                                                   gCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATgg                                                                                  >  1:7208/1‑140 (MQ=255)

                                                      ggCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCaa                                                                               <  2:542723/140‑1 (MQ=255)

                                                        cTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATa                                                                             <  1:876636/140‑1 (MQ=255)

                                                                 gTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAat                                                                    >  1:975650/1‑140 (MQ=255)

                                                                 gTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAat                                                                    >  1:438056/1‑140 (MQ=255)

                                                                     tCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAatgatt                                                                >  2:484351/1‑139 (MQ=255)

                                                                       tATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGa                                                              >  2:729374/1‑140 (MQ=255)

                                                                         tCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGt                                                            >  1:510668/1‑140 (MQ=255)

                                                                         tCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGt                                                            >  1:526332/1‑140 (MQ=255)

                                                                         tCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGt                                                            >  1:555184/1‑140 (MQ=255)

                                                                               atgatAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTAc                                                      >  1:1071289/1‑140 (MQ=255)

                                                                                 gatAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACAt                                                    >  2:876091/1‑140 (MQ=255)

                                                                                 gatAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACAt                                                    >  1:972202/1‑140 (MQ=255)

                                                                                   taataaTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATgg                                                  >  2:1353327/1‑140 (MQ=255)

                                                                                           atttTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGa                                          >  2:319124/1‑140 (MQ=255)

                                                                                                         aaTCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACg                            <  2:438056/140‑1 (MQ=255)

                                                                                                         aaTCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACg                            <  1:426229/140‑1 (MQ=255)

                                                                                                         aaTCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACg                            >  1:583831/1‑140 (MQ=255)

                                                                                                         aaTCATTGTTGTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACg                            <  1:243612/140‑1 (MQ=255)

                                                                                                              ttgttgTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCg                       <  2:675479/140‑1 (MQ=255)

                                                                                                              ttgttgTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCg                       <  1:876091/140‑1 (MQ=255)

                                                                                                              ttgttgTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCg                       <  1:1382390/140‑1 (MQ=255)

                                                                                                              ttgttgTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCg                       <  1:1304044/140‑1 (MQ=255)

                                                                                                              ttgttgTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCg                       <  1:729374/140‑1 (MQ=255)

                                                                                                              ttgttgTTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCg                       <  2:1071289/140‑1 (MQ=255)

                                                                                                               tgttgtTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCgg                      >  1:988293/1‑140 (MQ=255)

                                                                                                               tgttgtTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCgg                      >  1:636370/1‑140 (MQ=255)

                                                                                                               tgttgtTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCgg                      >  2:895844/1‑140 (MQ=255)

                                                                                                               tgttgtTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCg                       <  1:1367083/139‑1 (MQ=255)

                                                                                                               tgttgtTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCg                       <  1:1046092/139‑1 (MQ=255)

                                                                                                               tgttgtTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCg                       >  2:1367083/1‑139 (MQ=255)

                                                                                                               tgttgtTTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCg                       >  2:1046092/1‑139 (MQ=255)

                                                                                                                gttgttTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGt                     <  1:1353327/140‑1 (MQ=255)

                                                                                                                   gttTTATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGa                  <  1:829541/140‑1 (MQ=255)

                                                                                                                     tttATGCGTAACTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGata                <  1:1351263/140‑1 (MQ=255)

                                                                                                                       tATGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGatata              <  2:640603/140‑1 (MQ=255)

                                                                                                                       tATGCGTAATTACTTATATTTATTTATACAAAGATGAAACTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGatata              >  1:1317026/1‑140 (MQ=255)

                                                                                                                         tGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGt                     <  1:500769/131‑1 (MQ=255)

                                                                                                                         tGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATc            >  2:674570/1‑140 (MQ=255)

                                                                                                                         tGCGTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATc            >  1:1284490/1‑140 (MQ=255)

                                                                                                                            gTAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAat         <  2:1335321/140‑1 (MQ=255)

                                                                                                                             tAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAata        <  2:247082/140‑1 (MQ=255)

                                                                                                                             tAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAata        <  1:895844/140‑1 (MQ=255)

                                                                                                                             tAATTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAata        <  2:1009888/140‑1 (MQ=255)

                                                                                                                              aaTTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAatat       >  1:519261/1‑140 (MQ=255)

                                                                                                                               aTTACTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAAtata      <  2:7208/140‑1 (MQ=255)

                                                                                                                                   cTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCATATTTTTTTCCGCACGTAGCGGTGGATATATCAATATAcaca  >  2:942884/1‑140 (MQ=255)

                                                                                                                                   cTTATATTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATAcaca  <  2:1076549/140‑1 (MQ=255)

AGTGATTATATTAATCCAGAGCATAAAAAAACGATAAAGGCTTTACAAGATGCTGGCTATCTCAAGTAATCTATCAAAGATGATAATATTTATTTTTGCTATTATAATCATTGTTGTTTTATGCGTAATTACTTATCTTTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACA  >  NC_000913/528591‑528861

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A