Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A15 F48 I1 R1 115 87.5 3003888 99.1% 2976853 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 914,655 C→A S68I (AGT→ATT)  lysO ← L‑lysine exporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913914,6550CA100.0% 275.4 / NA 77S68I (AGT→ATT) lysOL‑lysine exporter
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (36/41);  total (36/41)

CGCCGCACAGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTAATAGCTGATTAATAACTTTTAACGCAGCTT  >  NC_000913/914518‑914790
                                                                                                                                         |                                                                                                                                       
cgccgcACAGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATg                                                                                                                                       >  1:16587/1‑140 (MQ=255)
 gccgcACAGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGa                                                                                                                                      <  1:122549/140‑1 (MQ=255)
 gccgcACAGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGa                                                                                                                                      <  2:667154/140‑1 (MQ=255)
    gcACAGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACgg                                                                                                                                   <  2:1484601/140‑1 (MQ=255)
    gcACAGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACgg                                                                                                                                   <  2:457451/140‑1 (MQ=255)
    gcACAGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACgg                                                                                                                                   <  1:804615/140‑1 (MQ=255)
    gcACAGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACgg                                                                                                                                   <  1:722386/140‑1 (MQ=255)
     cacaGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGc                                                                                                                                  >  2:990877/1‑140 (MQ=255)
     cacaGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGc                                                                                                                                  >  1:975563/1‑140 (MQ=255)
         gTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGaa                                                                                                                              <  2:875760/140‑1 (MQ=255)
             tAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGaataat                                                                                                                          >  1:756897/1‑140 (MQ=255)
              aGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCGGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATg                                                                                                                         <  2:606789/140‑1 (MQ=255)
                agACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCa                                                                                                                       <  2:142490/139‑1 (MQ=255)
                   atCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGaa                                                                                                                    <  2:756897/139‑1 (MQ=255)
                    tCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAAt                                                                                                                   >  2:39161/1‑140 (MQ=255)
                     ccAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATc                                                                                                                  <  1:835136/140‑1 (MQ=255)
                     ccAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATc                                                                                                                  <  2:851332/140‑1 (MQ=255)
                      cAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATcc                                                                                                                 >  2:1197166/1‑139 (MQ=255)
                        gcgcCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGcc                                                                                                               <  2:1340913/140‑1 (MQ=255)
                        gcgcCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGcc                                                                                                               <  2:1338265/140‑1 (MQ=255)
                         cgcCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCa                                                                                                              >  1:977212/1‑140 (MQ=255)
                            cATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACa                                                                                                           <  2:1251241/140‑1 (MQ=255)
                             aTCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAg                                                                                                          >  2:937588/1‑140 (MQ=255)
                               cGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGt                                                                                                        <  1:578381/140‑1 (MQ=255)
                                   aTACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACt                                                                                                    >  1:413028/1‑140 (MQ=255)
                                      cgcgACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGc                                                                                                 >  2:112394/1‑140 (MQ=255)
                                                  ttttCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCgag                                                                                     <  2:288545/140‑1 (MQ=255)
                                                   tttCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCgaga                                                                                    <  1:1128659/140‑1 (MQ=255)
                                                        tGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGc                                                                               <  2:1418940/140‑1 (MQ=255)
                                                        tGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGc                                                                               <  2:199253/140‑1 (MQ=255)
                                                         gCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGcc                                                                              <  1:1306833/140‑1 (MQ=255)
                                                           tGATGGTGGTTGTGCCACGGCAGGCCGCGCTTTAGCCACATCAATGCGGCAATATTATACAGTAAAATAACGGTAATAATGAACGCAGCATAATGCAGAATCCGCAACAGGTTACTGGCGAAGCTATGGAGTAACgggat                                                                            >  2:68711/1‑136 (MQ=255)
                                                           tGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAg                                                                            >  1:242285/1‑140 (MQ=255)
                                                               ggtggtTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTg                                                                        >  2:358190/1‑140 (MQ=255)
                                                                 tggtTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGAt                                                                      <  2:313780/140‑1 (MQ=255)
                                                                  ggtAGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATa                                                                     >  1:801834/1‑140 (MQ=255)
                                                                   gtTGCGCCTCGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATAc                                                                    <  1:937588/140‑1 (MQ=255)
                                                                    ttGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATAcc                                                                   >  1:1101172/1‑140 (MQ=255)
                                                                       cgcCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCAt                                                                >  2:1055005/1‑140 (MQ=255)
                                                                       cgcCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCAt                                                                >  2:276050/1‑140 (MQ=255)
                                                                       cgcCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCAt                                                                >  2:200144/1‑140 (MQ=255)
                                                                             ggCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATaaaaaa                                                          >  2:1362727/1‑140 (MQ=255)
                                                                                  gCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGGAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATGCCCATAAAAAAGAGaa                                                     <  1:423886/140‑1 (MQ=255)
                                                                                  gCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGaa                                                     <  2:16587/140‑1 (MQ=255)
                                                                                  gCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGaa                                                     <  2:801834/140‑1 (MQ=255)
                                                                                  gCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGaa                                                     <  1:276050/140‑1 (MQ=255)
                                                                                   ccTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAAt                                                    <  2:242285/140‑1 (MQ=255)
                                                                                   ccTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAAt                                                    <  1:821523/140‑1 (MQ=255)
                                                                                    cTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATa                                                   >  2:528816/1‑140 (MQ=255)
                                                                                      cGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAg                                                 <  2:936435/140‑1 (MQ=255)
                                                                                         tCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTa                                              <  2:977212/140‑1 (MQ=255)
                                                                                           cAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTaaa                                            <  1:112394/140‑1 (MQ=255)
                                                                                             gCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAAcc                                          >  2:392220/1‑140 (MQ=255)
                                                                                              ccACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCa                                         <  1:1040874/140‑1 (MQ=255)
                                                                                                 caTCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATcc                                      <  1:1420005/140‑1 (MQ=255)
                                                                                                 caTCAGGGCGGCAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATcc                                      <  1:39161/140‑1 (MQ=255)
                                                                                                       ggcggcAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCCGCTTa                                <  2:975563/140‑1 (MQ=255)
                                                                                                       ggcggcAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTa                                >  2:197212/1‑140 (MQ=255)
                                                                                                       ggcggcAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTa                                >  2:1469942/1‑140 (MQ=255)
                                                                                                        gcggcAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTaa                               >  1:927610/1‑140 (MQ=255)
                                                                                                        gcggcAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTaa                               >  1:579093/1‑140 (MQ=255)
                                                                                                           gcAATATTACACAGTAAAATAACGGTAATAATGACGGTAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTAATAg                            <  2:1119582/140‑1 (MQ=255)
                                                                                                            cAATATTACACAGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTAATAGc                           >  1:664136/1‑140 (MQ=255)
                                                                                                                     acaGTAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTAATAGCTGATtaata                  <  1:990877/140‑1 (MQ=255)
                                                                                                                     acaGTAAAATAACGGTAATAATGACGGCAGAAGAATGCAGAATCGCCAGCAGGTTACTGGCGAGGTTATCGAGAAACGCCAGAATGATGCCCATAAAAAAGAGAATAAGGTAAACCGTCCTGCTTAATAGCTGATtaata                  <  2:1361212/140‑1 (MQ=255)
                                                                                                                         tAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTAATAGCTGATTAATAACtt              >  2:63263/1‑140 (MQ=255)
                                                                                                                         tAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTAATAGCTGATTAATAACtt              >  1:166603/1‑140 (MQ=255)
                                                                                                                         tAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTAATAGCTGATTAATAACtt              >  1:579794/1‑140 (MQ=255)
                                                                                                                         tAAAATAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTAATAGCTGATTAATAACtt              >  2:1076813/1‑140 (MQ=255)
                                                                                                                            aaTAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTAATAGCTGATTAATAACTTTTa           >  2:201316/1‑140 (MQ=255)
                                                                                                                            aaTAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTAATAGCTGATTAATAACTTTTa           >  2:426998/1‑140 (MQ=255)
                                                                                                                             aTAACGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTAATAGCTGATTAATAACTTTTaa          <  1:1063425/140‑1 (MQ=255)
                                                                                                                               aaCGGTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTAATAGCTGATTAATAACTTTTAACg        <  1:1013477/140‑1 (MQ=255)
                                                                                                                                   gTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAATGTAAACCATCCAGCTTAATAGCTGATTAATAACTTTTAACGCAGc    >  2:1235838/1‑140 (MQ=255)
                                                                                                                                   gTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTAATAGCTGATTAATAACTTTTAACGCAgt    >  2:631742/1‑139 (MQ=255)
                                                                                                                                   gTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTAATAGCTGATTAATAACTTTTAACGCAGc    >  2:870416/1‑140 (MQ=255)
                                                                                                                                   gTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTAATAGCTGATTAATAACTTTTAACGCAGc    >  2:1123439/1‑140 (MQ=255)
                                                                                                                                   gTAATAATGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTAATAGCTGATTAATAACTTTTAACGCAGc    >  1:1089109/1‑140 (MQ=255)
                                                                                                                                     aataatGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTAATAGCTGATTAATAACTTTTAACGCAGCtt  >  1:1414768/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                       
CGCCGCACAGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTAATAGCTGATTAATAACTTTTAACGCAGCTT  >  NC_000913/914518‑914790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A