Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F48 I1 R1 79 90.7 3162666 99.0% 3131039 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 921,954 C→A G536G (GGC→GGA)  macB → ABC‑type tripartite efflux pump ATP binding/membrane subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913921,9540CA100.0% 252.0 / NA 74G536G (GGC→GGA) macBABC‑type tripartite efflux pump ATP binding/membrane subunit
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (28/46);  total (28/46)

TTTACTTTCACTGCGCCACGGAAAGAAGGATTTCTTTACCTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGCGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTGATCGAAGCCGTACTGGTTTGCCT  >  NC_000913/921819‑922088
                                                                                                                                       |                                                                                                                                      
tttACTTTCACTGCGCCACGGAAAGAAGGATTTCTTTACCTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTa                                                                                                                                    <  2:1020425/140‑1 (MQ=255)
tttACTTTCACTGCGCCACGGAAAGAAGGATTTCTTTACCTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTa                                                                                                                                    <  1:389222/140‑1 (MQ=255)
 ttACTTTCGCTGGGCCACGGAAAGAAGGATTTCGTTACCTGGAACATGGACGGCGTCTCGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTAt                                                                                                                                   <  2:1189614/140‑1 (MQ=255)
  tACTTTCACTGCGCCACGGAAAGAAGGATTTCTTTACCTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTAtt                                                                                                                                  >  1:118567/1‑140 (MQ=255)
     tttCACTGCGGCACGGAAAGAAGGATTTCTTTGCCTGGAACATGGACGGCGTCTTGAAAACTGTTGGAAAGACCACACGTGCTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGgt                                                                                                                               <  1:807724/140‑1 (MQ=255)
     tttCACTGCGCCACGGAAAGAAGGATTTCTTTACCTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGgt                                                                                                                               <  1:313520/140‑1 (MQ=255)
     tttCACTGCGCCACGGAAAGAAGGATTTCTTTACCTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGgt                                                                                                                               <  2:1264850/140‑1 (MQ=255)
     tttCACTGCGCCACGGAAAGAAGGATTTCTTTACCTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGgt                                                                                                                               <  2:894391/140‑1 (MQ=255)
        cACTGCGCCACGGAAAGAAGGATTTCTTTACCTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGgtgaa                                                                                                                            <  2:1396728/140‑3 (MQ=255)
        cACTGCGCCACGGAAAGAAGGATTTCTTTACCTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTa                                                                                                                            <  2:118567/140‑1 (MQ=255)
         aCTGCGCCACGGAAAGAAGGATTTCTTTACCTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTaa                                                                                                                           >  1:395749/1‑140 (MQ=255)
          cTGCGCCACGGAAAGAAGGATTTCTTTACCTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAAt                                                                                                                          <  2:1499729/140‑1 (MQ=255)
          cTGCGCCACGGAAAGAAGGATTTCTTTACCTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAAt                                                                                                                          <  2:297318/140‑1 (MQ=255)
          atGCGCCACGGAAAGAAGGATTTCTTTACCTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAAt                                                                                                                          <  2:1312827/139‑1 (MQ=255)
          atGCGCCACGGAAAGAAGGATTTCTTTACCTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAAt                                                                                                                          <  2:395749/139‑1 (MQ=255)
             cgcCACGGAAAGAAGGATTTCTTTACCTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGaa                                                                                                                       >  1:552438/1‑140 (MQ=255)
             cgcCACGGAAAGAAGGATTTCTTTACCTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGaa                                                                                                                       >  1:249293/1‑140 (MQ=255)
                 aCGGAAAGAAGGATTTCTTTACCTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAAtatt                                                                                                                   <  2:968827/140‑1 (MQ=255)
                  cGGAAAGAAGGATTTCTTTACCTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAAtattt                                                                                                                  >  2:397521/1‑139 (MQ=255)
                       agaagGATTTCTTTACCTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGgt                                                                                                                               >  2:675983/1‑122 (MQ=255)
                       agaagGATTTCTTTACCTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGgt                                                                                                                               <  1:675983/122‑1 (MQ=255)
                       agaagGATTTCTTTACCTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTg                                                                                                             <  1:1083088/140‑1 (MQ=255)
                               ttCTTTACCTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGt                                                                                                     >  2:1369761/1‑140 (MQ=255)
                               ttCTTTACCTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGGGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGt                                                                                                     >  1:1540705/1‑140 (MQ=255)
                                       cTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGc                                                                                             >  2:1121228/1‑140 (MQ=255)
                                       cTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGc                                                                                             >  2:1083884/1‑140 (MQ=255)
                                        tGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCg                                                                                            <  1:518457/140‑1 (MQ=255)
                                         ggAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCgg                                                                                           >  1:526028/1‑140 (MQ=255)
                                          gAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGa                                                                                          >  1:1473341/1‑140 (MQ=255)
                                           aaCATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGAc                                                                                         >  2:715446/1‑140 (MQ=255)
                                           aaCATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGAc                                                                                         >  2:205180/1‑140 (MQ=255)
                                                ggACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCggg                                                                                    >  2:931182/1‑140 (MQ=255)
                                                     gCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGATGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAAtt                                                                               >  1:1256041/1‑140 (MQ=255)
                                                       gTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGCGGTGGGAGGCATTGGTGTAATGTATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTgg                                                                             >  2:843876/1‑140 (MQ=255)
                                                          ttGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCAt                                                                          <  1:334793/140‑1 (MQ=255)
                                                              aaaCTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGACTATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGc                                                                      <  2:1256041/140‑1 (MQ=255)
                                                              aaaCTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGc                                                                      <  1:1177516/140‑1 (MQ=255)
                                                              aaaCTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGc                                                                      <  1:1121228/140‑1 (MQ=255)
                                                              aaaCTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGc                                                                      <  1:69135/140‑1 (MQ=255)
                                                              aaaCTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGc                                                                      <  1:1369761/140‑1 (MQ=255)
                                                              aaaCTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGc                                                                      <  2:526028/140‑1 (MQ=255)
                                                              aaaCTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGc                                                                      <  1:598319/140‑1 (MQ=255)
                                                              aaaCTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGc                                                                      <  1:4948/140‑1 (MQ=255)
                                                              aaaCTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGc                                                                      <  1:205180/140‑1 (MQ=255)
                                                               aaCTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCa                                                                     <  1:207314/140‑1 (MQ=255)
                                                                aCTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCAt                                                                    <  2:552438/140‑1 (MQ=255)
                                                                      gAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGt                                                              <  1:397521/140‑1 (MQ=255)
                                                                      gAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGt                                                              <  1:1574030/140‑1 (MQ=255)
                                                                            aCCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCAt                                                                    <  1:767645/128‑1 (MQ=255)
                                                                            aCCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCAt                                                                    >  2:767645/1‑128 (MQ=255)
                                                                            aCCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTgc                                                        >  2:976564/1‑140 (MQ=255)
                                                                              cacaCGTACTTTACAACTGTTTCTGACGCTGGGGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGGGTAATGAATATTATGCTGGAGTCCGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTgcgc                                                      >  2:1190105/1‑140 (MQ=255)
                                                                                 acGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGATTATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGAAGGTGCGCGAg                                                   >  1:1008220/1‑140 (MQ=255)
                                                                                        ttACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGGATTGGTGTAATGAATATTTTGCTGGTGTCCGTGACCGAGCGGACCCGGGAAATTGGCATTCGCATGGCTGTAGGCGTGCGAGCATGCgt                                            >  2:1343897/1‑139 (MQ=255)
                                                                                        ttACAACTGTTTCTGACGATGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGa                                            >  1:1031719/1‑140 (MQ=255)
                                                                                             aCTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGttt                                       <  2:1473341/140‑1 (MQ=255)
                                                                                              ttGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTCATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTTGCATTCGCATGGCTGTAGGTGCGCGAGCCAGCGATGtttt                                      >  2:1209597/2‑140 (MQ=255)
                                                                                                gTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGc                                    <  1:1083884/140‑1 (MQ=255)
                                                                                                 tttCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGcc                                   >  1:1276865/1‑139 (MQ=255)
                                                                                                  ttCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCaa                                  <  1:976564/140‑1 (MQ=255)
                                                                                                  ttCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCaa                                  <  2:777685/140‑1 (MQ=255)
                                                                                                  ttCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCaa                                  <  2:455620/140‑1 (MQ=255)
                                                                                                  ttCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCaa                                  <  1:472583/140‑1 (MQ=255)
                                                                                                  ttCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGAAAGCGATGTTTTGCaa                                  <  2:1540705/140‑1 (MQ=255)
                                                                                                         gCTGGTGGCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTcc                           >  2:742400/1‑140 (MQ=255)
                                                                                                           tggtggCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTg                         >  2:1158385/1‑140 (MQ=255)
                                                                                                           tggtggCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGGCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTg                         >  2:1047182/1‑140 (MQ=255)
                                                                                                             gtggCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTGAt                       >  2:1570856/1‑140 (MQ=255)
                                                                                                              tggCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTGATc                      <  1:234219/140‑1 (MQ=255)
                                                                                                                gCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTGATCGa                    <  2:421079/140‑1 (MQ=255)
                                                                                                                gCGGTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTGATCGa                    <  1:1238163/140‑1 (MQ=255)
                                                                                                                  ggTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTGATCGAAg                  <  1:1047182/140‑1 (MQ=255)
                                                                                                                  ggTGATTTCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTGATCGAAg                  <  2:249293/140‑1 (MQ=255)
                                                                                                                       tttCGCTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTGATCGAAGCCGTa             <  1:931182/140‑1 (MQ=255)
                                                                                                                            cTGGTGGTGGGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGGAAGCGATGTTTTGCAACAGTTCCTGATCGAAGCCGTACTGGt        <  2:1019782/140‑1 (MQ=255)
                                                                                                                               gtggtggGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTGATCGAAGCCGTACTGGTTTg     >  1:662519/1‑140 (MQ=255)
                                                                                                                                tggtggGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTGATCGAAGCCGTACTGGTTTGc    <  2:662519/140‑1 (MQ=255)
                                                                                                                                  gtggGAGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTGATCGAAGCCGTACTGGTTTGCCt  >  1:1292791/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                      
TTTACTTTCACTGCGCCACGGAAAGAAGGATTTCTTTACCTGGAACATGGACGGCGTCTTGAAAACTGTTGAAAAGACCACACGTACTTTACAACTGTTTCTGACGCTGGTGGCGGTGATTTCGCTGGTGGTGGGCGGTATTGGTGTAATGAATATTATGCTGGTGTCAGTGACCGAGCGGACGCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTGATCGAAGCCGTACTGGTTTGCCT  >  NC_000913/921819‑922088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A