Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F48 I1 R1 62 147.6 5031800 99.1% 4986513 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 922,231 G→T G629C (GGC→TGC)  macB → ABC‑type tripartite efflux pump ATP binding/membrane subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913922,2310GT100.0% 478.9 / NA 132G629C (GGC→TGC) macBABC‑type tripartite efflux pump ATP binding/membrane subunit
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (51/81);  total (51/81)

Only 100 of 134 total aligned reads displayed.

TGGCGCGTTGGGAATAACACTGTCACTGTTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTGGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCTTTAGGATGTACACAATGAGACAGAAG  >  NC_000913/922095‑922363
                                                                                                                                        |                                                                                                                                    
      gTTGGGAATAACACTGTCACTGTTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTAc                                                                                                                             >  1:455307/1‑140 (MQ=255)
         gggAATAACACTGTCACTGTTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCg                                                                                                                          >  2:2322165/1‑140 (MQ=255)
           gAATAACACTGTCACTGTTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCa                                                                                                                        <  1:1003424/140‑1 (MQ=255)
           gAATAACACTGTCACTGTTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCa                                                                                                                        <  1:208040/140‑1 (MQ=255)
           gAATAACACTGTCACTGTTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCa                                                                                                                        <  2:1442138/140‑1 (MQ=255)
           gAATAACACTGTCACTGTTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCa                                                                                                                        <  1:1096530/140‑1 (MQ=255)
                    tgtcactgtTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCg                                                                                                               >  1:1438569/1‑140 (MQ=255)
                     gtcactgtTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCgg                                                                                                              <  2:1645185/140‑1 (MQ=255)
                     gtcactgtTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCgg                                                                                                              <  2:2459347/140‑1 (MQ=255)
                     gtcactgtTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCgg                                                                                                              <  2:1118102/140‑1 (MQ=255)
                     gtcactgtTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCgg                                                                                                              <  2:1399419/140‑1 (MQ=255)
                     gtcactgtTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCgg                                                                                                              <  2:1372267/140‑1 (MQ=255)
                      tcactgtTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGc                                                                                                             >  2:630501/1‑140 (MQ=255)
                      tcactgtTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGc                                                                                                             >  1:2030124/1‑140 (MQ=255)
                      tcactgtTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGc                                                                                                             <  2:1277053/140‑1 (MQ=255)
                      tcactgtTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGc                                                                                                             >  1:1845328/1‑140 (MQ=255)
                      tcactgtTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGc                                                                                                             >  2:911145/1‑140 (MQ=255)
                      tcactgtTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGc                                                                                                             >  1:460093/1‑140 (MQ=255)
                      tcactgtTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGc                                                                                                             >  2:2276061/1‑140 (MQ=255)
                        actgtTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCAc                                                                                                           >  2:330406/1‑140 (MQ=255)
                         ctgtTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACg                                                                                                          >  1:1621710/1‑140 (MQ=255)
                         ctgtTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTACACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACg                                                                                                          >  1:1708756/1‑140 (MQ=255)
                          tgtTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGa                                                                                                         <  1:514126/140‑1 (MQ=255)
                          tgtTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGa                                                                                                         <  1:2322165/140‑1 (MQ=255)
                           gtTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGAc                                                                                                        >  2:2006021/1‑140 (MQ=255)
                           gtTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGAc                                                                                                        >  1:1740597/1‑140 (MQ=255)
                            ttAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACt                                                                                                       <  2:2501182/140‑1 (MQ=255)
                            ttAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACt                                                                                                       <  1:59957/140‑1 (MQ=255)
                            ttAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACt                                                                                                       <  1:744285/140‑1 (MQ=255)
                            ttAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACt                                                                                                       >  2:2324515/1‑140 (MQ=255)
                            ttAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACt                                                                                                       <  2:1452533/140‑1 (MQ=255)
                            ttAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACt                                                                                                       >  2:2108836/1‑140 (MQ=255)
                            ttAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACt                                                                                                       <  1:1674731/140‑1 (MQ=255)
                            ttAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACt                                                                                                       <  1:1930739/140‑1 (MQ=255)
                               aTTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGa                                                                                                    <  2:1708756/140‑1 (MQ=255)
                                 tGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATc                                                                                                  <  1:2006021/140‑1 (MQ=255)
                                 tGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATc                                                                                                  <  2:1452460/140‑1 (MQ=255)
                                    tttCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAg                                                                                               >  1:1210676/1‑140 (MQ=255)
                                     ttCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGt                                                                                              <  1:544037/140‑1 (MQ=255)
                                      tCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTa                                                                                             >  2:2003057/1‑140 (MQ=255)
                                       cACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCGGCACGAAATGCGGCACGACTGGATCCAGTAg                                                                                            <  2:372517/140‑1 (MQ=255)
                                       cACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAg                                                                                            <  2:460093/140‑1 (MQ=255)
                                       cACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAg                                                                                            <  1:2462672/140‑1 (MQ=255)
                                        aCCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGa                                                                                           <  1:937818/140‑1 (MQ=255)
                                                gCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCCGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTgg                                                                                   <  2:2353186/140‑1 (MQ=255)
                                                 cTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGTATCCAGTAGATGCTCTggt                                                                                  >  2:685686/1‑139 (MQ=255)
                                                  ttttCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCa                                                                                 <  1:1211392/140‑1 (MQ=255)
                                                  ttttCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCa                                                                                 <  2:1005236/140‑1 (MQ=255)
                                                    ttCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACg                                                                               >  1:2408330/1‑140 (MQ=255)
                                                    ttCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACg                                                                               <  1:2003057/140‑1 (MQ=255)
                                                    ttCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACg                                                                               <  1:1917228/140‑1 (MQ=255)
                                                        tACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGagag                                                                           >  2:1639308/1‑140 (MQ=255)
                                                            cGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAAt                                                                       >  2:1063764/1‑140 (MQ=255)
                                                             ggCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAAtt                                                                      >  2:1805100/1‑140 (MQ=255)
                                                              gCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAAttt                                                                     >  2:2386214/1‑140 (MQ=255)
                                                              gCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAAttt                                                                     >  1:1701368/1‑140 (MQ=255)
                                                                 gggAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTg                                                                  <  1:1399080/140‑1 (MQ=255)
                                                                       ttGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATaa                                                            <  1:630501/140‑1 (MQ=255)
                                                                         ggTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATaaaa                                                          >  2:1159936/1‑140 (MQ=255)
                                                                         ggTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATaaaa                                                          >  2:1583788/1‑140 (MQ=255)
                                                                             tttCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGc                                                      >  2:710941/1‑140 (MQ=255)
                                                                              ttCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGcc                                                     <  1:2511627/140‑1 (MQ=255)
                                                                                cACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAg                                                   >  2:337666/1‑140 (MQ=255)
                                                                                    gTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGa                                               >  1:923573/1‑140 (MQ=255)
                                                                                     ttGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGAt                                              <  1:1805100/140‑1 (MQ=255)
                                                                                      tGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATc                                             >  1:632729/1‑140 (MQ=255)
                                                                                       ggCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGcc                                                     <  1:2218979/131‑1 (MQ=255)
                                                                                       ggCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGcc                                                     >  2:2218979/1‑131 (MQ=255)
                                                                                                gctgGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCAt                                   <  1:558332/140‑1 (MQ=255)
                                                                                                  tgGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCAttt                                 <  1:1639308/140‑1 (MQ=255)
                                                                                                  tgGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCAttt                                 <  1:337666/140‑1 (MQ=255)
                                                                                                  tgGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCAttt                                 <  2:1845328/140‑1 (MQ=255)
                                                                                                  tgGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCAttt                                 <  1:1608692/140‑1 (MQ=255)
                                                                                                  aggCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTANATGNTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGACTGGCAttt                                 <  2:2012922/139‑1 (MQ=255)
                                                                                                    gCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTg                               <  1:1926181/140‑1 (MQ=255)
                                                                                                         tctcTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCttt                          <  2:2123217/140‑1 (MQ=255)
                                                                                                         tctcTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCttt                          <  2:586466/140‑1 (MQ=255)
                                                                                                         tctcTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCttt                          <  1:1063764/140‑1 (MQ=255)
                                                                                                         tctcTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCttt                          <  1:330406/140‑1 (MQ=255)
                                                                                                         tctcTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCttt                          <  2:1701368/140‑1 (MQ=255)
                                                                                                         tctcTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCttt                          <  1:726656/140‑1 (MQ=255)
                                                                                                         tctcTGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCttt                          <  1:911145/140‑1 (MQ=255)
                                                                                                           cctGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCTTTTAg                        <  2:2266839/139‑1 (MQ=255)
                                                                                                            ctGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCTTTAgg                       <  2:923573/140‑1 (MQ=255)
                                                                                                            ctGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCTTTAgg                       <  1:389952/140‑1 (MQ=255)
                                                                                                            ctGCTCGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCTTTAgg                       <  2:1709994/140‑1 (MQ=255)
                                                                                                                 cGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCTTTAGGATGTa                  <  2:1285387/140‑1 (MQ=255)
                                                                                                                 cGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCTTTAGGATGTa                  <  1:1175234/140‑1 (MQ=255)
                                                                                                                 cGACGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCTTTAGGATGTa                  <  1:2386214/140‑1 (MQ=255)
                                                                                                                 cGACGGTCACCGGGATTTTATTATGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCTTTAGGATGTa                  <  1:2108836/140‑1 (MQ=255)
                                                                                                                    cGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCTTTAGGATGTacac               >  2:1175817/1‑140 (MQ=255)
                                                                                                                    cGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCTTTAGGATGTacac               >  1:1431661/1‑140 (MQ=255)
                                                                                                                    cGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCTTTAGGATGTacac               >  1:553059/1‑140 (MQ=255)
                                                                                                                    cGGTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCTTTAGGATGTacac               >  1:2510881/1‑140 (MQ=255)
                                                                                                                      gTCACCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCTTTAGGATGTACACaa             <  2:1666488/140‑1 (MQ=255)
                                                                                                                         aCCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCTTTAGGATGTACACAATga          <  1:710941/140‑1 (MQ=255)
                                                                                                                         aCCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCTTTAGGATGTACACAATga          <  2:514554/140‑1 (MQ=255)
                                                                                                                         aCCGGGATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCTTTAGGATGTACACAATga          <  2:1438569/140‑1 (MQ=255)
                                                                                                                              gATTTTATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCTTTAGGATGTACACAATGAGACag     >  2:2100517/1‑140 (MQ=255)
                                                                                                                                 tttATTTTGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCTTTAGGATGTACACAATGAGACagaag  <  2:1834889/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                    
TGGCGCGTTGGGAATAACACTGTCACTGTTAATTGCTTTCACCTTGCAGCTTTTCTTACCCGGCTGGGAGATTGGTTTTTCACCGTTGGCGCTGCTGCTGGCGTTTCTCTGCTCGACGGTCACCGGGATTTTATTTGGCTGGTTACCCGCACGAAATGCGGCACGACTGGATCCAGTAGATGCTCTGGCACGAGAGTAATTTTTGAGATAAAAATGCCAGCCGATCGGGCTGGCATTTTGCCTTTAGGATGTACACAATGAGACAGAAG  >  NC_000913/922095‑922363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A