Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	929,362	C→A	R534L (CGC→CTC)	cydD ←	glutathione/L‑cysteine ABC exporter subunit CydD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	929,362	0	C	A	100.0%	419.8 / NA	122	R534L (CGC→CTC)	cydD	glutathione/L‑cysteine ABC exporter subunit CydD
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (54/68); total (54/68)

Only 100 of 124 total aligned reads displayed.

GTGGCGAATGGGCCACCAGCCACACTTAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGCGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAACAGGGATTTAGTAACGCACGGGCCACCGCCACGCGCTGCGCCTGCC  >  NC_000913/929227‑929497

gtgGCGAATGGGCCACCAGCCACACTTAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCag                                                                                                                                     <  1:268046/140‑1 (MQ=255)

gtgGCGAATGGGCCACCAGCCACACTTAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCag                                                                                                                                     >  1:1375180/1‑140 (MQ=255)

gtgGCGAATGGGCCACCAGCCACACTTAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCag                                                                                                                                     >  1:1265919/1‑140 (MQ=255)

 tgGCGAATGGGCCACCAGCCACACTTAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCaga                                                                                                                                    >  2:1726084/1‑140 (MQ=255)

 tgGCGAATGGGCCACCAGCCACACTTAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCaga                                                                                                                                    >  2:16917/1‑140 (MQ=255)

 tgGCGAATGGGCCACCAGCCACACTTAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCaga                                                                                                                                    >  2:1658577/1‑140 (MQ=255)

  ggCGAATGGGCCACCAGCCACACTTAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCagag                                                                                                                                   <  2:290143/140‑1 (MQ=255)

    cGAATGGGCCACCAGCCACACTTAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCagagag                                                                                                                                 >  2:1341771/1‑140 (MQ=255)

    cGAATGGGCCACCAGCCACACTTAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCagagag                                                                                                                                 <  1:2026175/140‑1 (MQ=255)

     gAATGGGCCACCAGCCACACTTAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAgg                                                                                                                                >  2:1534314/1‑140 (MQ=255)

      aaTGGGCCACCAGCCACACTTAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAggc                                                                                                                               >  2:892201/1‑140 (MQ=255)

      aaTGGGCCACCAGCCACACTTAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAggc                                                                                                                               <  2:906791/140‑1 (MQ=255)

       aTGGGCCACCAGCCACACTTAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAggcg                                                                                                                              <  2:611656/140‑1 (MQ=255)

         gggCCACCAGCCACACTTAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAggcggc                                                                                                                            >  2:141614/1‑140 (MQ=255)

          ggCCACCAGCCACACTTAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCa                                                                                                                           <  1:1812508/140‑1 (MQ=255)

          ggCCACCAGCCACACTTAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCa                                                                                                                           <  1:2027877/140‑1 (MQ=255)

               ccaGCCACACTTAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAg                                                                                                                      <  1:434185/140‑1 (MQ=255)

               ccaGCCACACTTAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAg                                                                                                                      <  2:438321/140‑1 (MQ=255)

                caGCCACACTTAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAgc                                                                                                                     <  1:1666799/140‑1 (MQ=255)

                  gCCACACTTAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAgcgc                                                                                                                   <  1:1697657/140‑1 (MQ=255)

                   ccACACTTAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGcc                                                                                                                  >  1:1576998/1‑140 (MQ=255)

                     acacTTAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTc                                                                                                                >  1:46684/1‑140 (MQ=255)

                         ttAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCAtt                                                                                                            <  2:1333335/140‑1 (MQ=255)

                           aaTTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTAc                                                                                                          <  2:1265919/140‑1 (MQ=255)

                             ttCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTAcgc                                                                                                        <  2:1781331/140‑1 (MQ=255)

                             ttCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTAcgc                                                                                                        <  2:501030/140‑1 (MQ=255)

                             ttCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTAcgc                                                                                                        <  1:1088623/140‑1 (MQ=255)

                              tCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAACAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTAcgcg                                                                                                       <  1:1334597/140‑1 (MQ=255)

                               ccGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACgcgc                                                                                                      <  1:1658577/140‑1 (MQ=255)

                                 gcgTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTg                                                                                                    <  1:1389710/140‑1 (MQ=255)

                                  cgTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGTCCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGt                                                                                                   >  2:884897/1‑140 (MQ=255)

                                  cgTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTAcgc                                                                                                        >  2:1969045/1‑135 (MQ=255)

                                  cgTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTAcgc                                                                                                        <  1:1969045/135‑1 (MQ=255)

                                  cgTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGt                                                                                                   >  2:1941689/1‑140 (MQ=255)

                                  cgTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGt                                                                                                   >  2:1166392/1‑140 (MQ=255)

                                  cgTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGt                                                                                                   >  1:310498/1‑140 (MQ=255)

                                  cgTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAAAGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGt                                                                                                   <  2:1766037/140‑1 (MQ=255)

                                   gTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGtt                                                                                                  >  1:1067340/1‑140 (MQ=255)

                                   gTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGtt                                                                                                  <  1:1726084/140‑1 (MQ=255)

                                       cGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACt                                                                                              >  2:697314/1‑140 (MQ=255)

                                       cGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACt                                                                                              <  1:442911/140‑1 (MQ=255)

                                       agTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACt                                                                                              <  2:712625/139‑1 (MQ=255)

                                                     aatCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGc                                                                                >  2:1541738/1‑140 (MQ=255)

                                                       tCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATc                                                                                     >  2:800801/1‑133 (MQ=255)

                                                       tCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATc                                                                                     <  1:800801/133‑1 (MQ=255)

                                                         cGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGc                                                                            >  1:107539/1‑140 (MQ=255)

                                                            ccATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGc                                                                         >  2:1686139/1‑140 (MQ=255)

                                                            ccATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGc                                                                         >  1:148597/1‑140 (MQ=255)

                                                            ccATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGc                                                                         >  1:2113585/1‑140 (MQ=255)

                                                            ccATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCAC‑‑TGAGCATCAAGGCTGGCAGCgg                                                                       >  2:1191563/1‑140 (MQ=255)

                                                              aTCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCgg                                                                       >  2:1964065/1‑140 (MQ=255)

                                                               tCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCggg                                                                      >  1:1788211/1‑140 (MQ=255)

                                                                ccTGCATAACCCAAATGACATCCCAGTCTGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGt                                                                     >  1:1131422/1‑140 (MQ=255)

                                                                ccTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGt                                                                     >  1:866672/1‑140 (MQ=255)

                                                                ccTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGt                                                                     <  2:1637561/140‑1 (MQ=255)

                                                                ccTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGt                                                                     <  2:1576998/140‑1 (MQ=255)

                                                                ccTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGt                                                                     <  2:75911/140‑1 (MQ=255)

                                                                 cTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGtt                                                                    >  1:1723600/1‑140 (MQ=255)

                                                                  tGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTc                                                                   >  1:497962/1‑140 (MQ=255)

                                                                    cATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCAt                                                                 <  2:1196567/140‑1 (MQ=255)

                                                                      tAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATcc                                                               <  2:148597/140‑1 (MQ=255)

                                                                      tAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATcc                                                               <  2:2113068/140‑1 (MQ=255)

                                                                      tAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATcc                                                               <  1:1388303/140‑1 (MQ=255)

                                                                      tAACCCAAATGACATCCCAGTCAGCAAGA‑CTTCTAACAGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTAATCCa                                                              >  1:1990254/1‑140 (MQ=255)

                                                                              aTGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGAATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTaa                                                       >  2:765476/1‑140 (MQ=255)

                                                                                 aCATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAg                                                    <  2:486467/140‑1 (MQ=255)

                                                                                  cATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGc                                                   >  2:734491/1‑140 (MQ=255)

                                                                                   aTCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCAt                                                                 >  1:493720/1‑125 (MQ=255)

                                                                                   aTCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCAt                                                                 <  2:493720/125‑1 (MQ=255)

                                                                                   aTCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCg                                                  >  2:1763056/1‑140 (MQ=255)

                                                                                    tCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCAC‑‑TGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAAc                                               <  1:1191563/140‑1 (MQ=255)

                                                                                     cccAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGaa                                                <  1:1559267/140‑1 (MQ=255)

                                                                                     cccAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGaa                                                <  2:1375180/140‑1 (MQ=255)

                                                                                     cccAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGaa                                                <  2:1291094/140‑1 (MQ=255)

                                                                                     cccAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGaa                                                <  1:141614/140‑1 (MQ=255)

                                                                                      ccAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAAc                                               <  1:892201/140‑1 (MQ=255)

                                                                                      ccAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAAc                                               <  2:46684/140‑1 (MQ=255)

                                                                                      ccAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAAc                                               <  1:1541738/140‑1 (MQ=255)

                                                                                      ccAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAAc                                               <  2:1505462/140‑1 (MQ=255)

                                                                                      acAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGAGGGTTCATCCAACAGTAATAGCGAAc                                               <  2:1715686/139‑1 (MQ=255)

                                                                                       cAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAACa                                              <  2:786637/140‑1 (MQ=255)

                                                                                        aGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAACAg                                             <  1:765476/140‑1 (MQ=255)

                                                                                            aGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTTAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAACAGGGAt                                         >  1:501783/1‑140 (MQ=255)

                                                                                            aGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAACAGGGAt                                         <  1:1166392/140‑1 (MQ=255)

                                                                                                 gATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAACAGGGATTTAGt                                    <  1:1677528/140‑1 (MQ=255)

                                                                                                  aTCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAACAGGGATTTAGTa                                   >  2:1531063/1‑140 (MQ=255)

                                                                                                       ctAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAACAGGGATTTAGTAACGCa                              <  2:1067340/140‑1 (MQ=255)

                                                                                                       ctAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAACAGGGATTTAGTAACGCa                              <  1:29946/140‑1 (MQ=255)

                                                                                                       ctAACTGGTGGGTGACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAACAGGGATTTAGTAACGCa                              <  2:903549/140‑1 (MQ=255)

                                                                                                             ggtgggtgACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCACTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGGTCATCCAACAGTAATAGCGAACAGGGATTTAGTAACGCACGGGcc                        >  1:1058848/1‑140 (MQ=255)

                                                                                                               tgggtgACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAACAGGGATTTAGTAACGCACGGGCCAc                      >  2:388579/1‑140 (MQ=255)

                                                                                                               tgggtgACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAACAGGGATTTAGTAACGCACGGGCCAc                      >  1:2015038/1‑140 (MQ=255)

                                                                                                                   tgACCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAACAGGGATTTAGTAACGCACGGGCCACCGcc                  <  2:1717900/140‑1 (MQ=255)

                                                                                                                     aCCATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAACAGGGATTTAGTAACGCACGGGCCACCGCCAc                >  2:1931746/1‑140 (MQ=255)

                                                                                                                      ccATTAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAACAGGGATTTAG‑AACGCACGGGCCACCGCCAcgc              >  2:1092770/1‑140 (MQ=255)

                                                                                                                         ttAACGTTGTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAACAGGGATTTAGTAACGCACGGGCCACCGCCACgcgc            >  1:456711/1‑140 (MQ=255)

                                                                                                                                tGTCTGGCGCAGAAAGACGGCATTAATCGCCTCCATTACCCGCTGTACACTGTGGGCATTAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAACGGGGATTTAGTACCGCACGGGCCACCGCCACGCGCTGCGCCt     <  2:1990254/140‑1 (MQ=255)

                                                                                                                                 gTCTGGAGCAGAGAGGCGGCTTTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAACAGGGATTTAGTAACGCACGGGCCACCGCCACGCGCTGCGCCTg    <  1:963265/140‑1 (MQ=255)

                                                                                                                                 gTCTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAACAGGGATTTAGTAACGCACGGGCCACCGCCACGCGCTGCGCCTg    >  1:648510/1‑140 (MQ=255)

                                                                                                                                   cTGGAGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAACAGGGATTTAGTAACGCACGGGCCACCGCCACGCGCTGCGCCTGcc  >  1:834092/1‑140 (MQ=255)

GTGGCGAATGGGCCACCAGCCACACTTAATTCCGCGTAACGTCCTTGCTCAATAATCCGGCCATCCTGCATAACCCAAATGACATCCCAGTCAGCAAGATCTTCTAACTGGTGGGTGACCATTAACGTTGTCTGGCGCAGAGAGGCGGCATTCAGCGCCTCCATTACGCGCTGTTCACTGTGAGCATCAAGGCTGGCAGCGGGTTCATCCAACAGTAATAGCGAACAGGGATTTAGTAACGCACGGGCCACCGCCACGCGCTGCGCCTGCC  >  NC_000913/929227‑929497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A