Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A15 F48 I1 R1	115	87.5	3003888	99.1%	2976853	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	999,300	G→T	A29S (GCA→TCA)	elfC →	putative fimbrial usher protein ElfC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	999,300	0	G	T	100.0%	333.5 / NA	93	A29S (GCA→TCA)	elfC	putative fimbrial usher protein ElfC
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (54/39); total (54/39)

CGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGAGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTT  >  NC_000913/999169‑999434

cgcAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGAGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTc                                                                                                                                <  2:828677/140‑1 (MQ=255)

 gcAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGAGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCa                                                                                                                               <  1:330557/140‑1 (MQ=255)

       caactGTAAATCGTAAGCCGTCTTCAGTTAAGAGAGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGcac                                                                                                                         <  1:1052750/140‑1 (MQ=255)

       caactGTAAATCGTAAGCCGTCTTCAGTTAAGAGAGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGcac                                                                                                                         <  2:947073/140‑1 (MQ=255)

        aactGTAAATCGTAAGCCGTCTTCAGTTAAGAGAGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGcaca                                                                                                                        >  1:694995/1‑140 (MQ=255)

             tAAATCGTAAGCCGTCTTCAGTTAAGAGAGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTg                                                                                                                   <  2:694995/140‑1 (MQ=255)

                aTCGTAAGCCGTCTTCAGTTAAGAGAGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGaaa                                                                                                                >  1:1098330/1‑140 (MQ=255)

                  cGTAAGCCGTCTTCAGTTAAGAGAGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAAcc                                                                                                              <  2:1366953/140‑1 (MQ=255)

                    tAAGCCGTCTTCAGTTAAGAGAGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTg                                                                                                            >  2:854056/1‑140 (MQ=255)

                       gCCGTCTTCAGTTAAGAGAGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGtt                                                                                                         <  2:726341/140‑1 (MQ=255)

                       gCCGTCTTCAGTTAAGAGAGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGCTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAGACCTGGtt                                                                                                         >  2:256590/1‑140 (MQ=255)

                            cTTCAGTTAAGAGAGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATc                                                                                                    >  1:1373798/1‑140 (MQ=255)

                            cTTCAGTTAAGAGAGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATc                                                                                                    <  2:367665/140‑1 (MQ=255)

                                     agagagCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCttttt                                                                                           >  1:491829/1‑140 (MQ=255)

                                        gagCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCa                                                                                        <  1:847483/140‑1 (MQ=255)

                                         agCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCaa                                                                                       >  1:806494/1‑140 (MQ=255)

                                         agCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCaa                                                                                       >  2:807672/1‑140 (MQ=255)

                                          gCGAGATTTATAGAACTCATCGACAACACAGCCATTTAAGCGCTGGTGGAGTTCCAGGGTGTATTGGTGGGGTTGAAGATGTTGTGTCTTTAGCTTTCAATGCACAAGCTGAAAGCTGGTTCGATCCTGCTTTTTTCaaa                                                                                      >  2:1412173/1‑140 (MQ=255)

                                          gCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCaaa                                                                                      >  2:1468804/1‑140 (MQ=255)

                                           cGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCaaat                                                                                     >  1:1132773/1‑139 (MQ=255)

                                           cGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAg                                                                                     >  1:62624/1‑140 (MQ=255)

                                           cGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAg                                                                                     >  2:1031666/1‑140 (MQ=255)

                                            gagaTGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAga                                                                                    >  1:778609/1‑140 (MQ=255)

                                            gagaTGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAga                                                                                    >  1:241494/1‑140 (MQ=255)

                                               aTGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAgatga                                                                                 <  2:806494/140‑1 (MQ=255)

                                               aTGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAgatga                                                                                 <  2:1219207/140‑1 (MQ=255)

                                               aTGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAgatga                                                                                 <  2:199468/140‑1 (MQ=255)

                                                tGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAgatgat                                                                                <  2:1105374/140‑1 (MQ=255)

                                                    taGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGAGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGTTCCTGCTTTTTTCAAAGATGATCCCt                                                                            >  2:554174/1‑140 (MQ=255)

                                                      gAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCAGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCa                                                                          >  2:806461/1‑140 (MQ=255)

                                                        aCTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAAt                                                                        <  2:656257/140‑1 (MQ=255)

                                                         cTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAAtg                                                                       >  2:821830/1‑140 (MQ=255)

                                                         cTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAAtg                                                                       >  2:289441/1‑140 (MQ=255)

                                                            aTCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAAtggtg                                                                    >  1:783337/1‑140 (MQ=255)

                                                            aTCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAAtggtg                                                                    >  2:1301624/1‑140 (MQ=255)

                                                            aTCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAAtggtg                                                                    >  2:1252115/1‑140 (MQ=255)

                                                            aTCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAAtggtg                                                                    >  2:559732/1‑140 (MQ=255)

                                                              cGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGc                                                                  >  2:911453/1‑140 (MQ=255)

                                                                      caGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGt                                                          <  2:491829/140‑1 (MQ=255)

                                                                      caGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGt                                                          >  1:882265/1‑140 (MQ=255)

                                                                      caGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGCGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGt                                                          >  2:1278391/1‑140 (MQ=255)

                                                                       aGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGtc                                                         >  2:273463/1‑140 (MQ=255)

                                                                            gTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGtt                                                    >  1:671563/1‑140 (MQ=255)

                                                                            gTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGAGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGtt                                                    >  2:607196/1‑140 (MQ=255)

                                                                             ttAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGttt                                                   >  1:244820/1‑140 (MQ=255)

                                                                             ttAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGttt                                                   <  2:778609/140‑1 (MQ=255)

                                                                             ttAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGttt                                                   >  1:1477503/1‑140 (MQ=255)

                                                                               aaGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCg                                                 <  1:559732/140‑1 (MQ=255)

                                                                                aGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGa                                                >  2:64888/1‑140 (MQ=255)

                                                                                   tctGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGaaaa                                             <  1:1004279/140‑1 (MQ=255)

                                                                                   tctGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGaaaa                                             >  2:683063/1‑140 (MQ=255)

                                                                                   tctGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGaaaa                                             >  2:460040/1‑140 (MQ=255)

                                                                                    ctGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGaaaaa                                            <  1:1085083/140‑1 (MQ=255)

                                                                                    ctGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGaaaaa                                            <  2:1373798/140‑1 (MQ=255)

                                                                                     tggtggAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAg                                           >  2:1344265/1‑140 (MQ=255)

                                                                                       gtggAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGa                                         >  2:76702/1‑140 (MQ=255)

                                                                                       gtggAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGa                                         >  2:351435/1‑140 (MQ=255)

                                                                                       gtggAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGa                                         >  1:608931/1‑140 (MQ=255)

                                                                                        tggAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGAc                                        <  2:608931/140‑1 (MQ=255)

                                                                                            gTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACaaaa                                    >  1:737234/1‑140 (MQ=255)

                                                                                             tGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACaaaaa                                   >  1:151767/1‑140 (MQ=255)

                                                                                               ccATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAAt                                 <  1:273463/140‑1 (MQ=255)

                                                                                               ccATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAAt                                 <  2:244820/140‑1 (MQ=255)

                                                                                               ccATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAAt                                 >  1:871363/1‑140 (MQ=255)

                                                                                                 aTCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATaa                               >  1:1137126/1‑140 (MQ=255)

                                                                                                 aTCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATaa                               >  1:292066/1‑140 (MQ=255)

                                                                                                    gTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGc                            >  2:2775/1‑140 (MQ=255)

                                                                                                    gTTTATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGc                            <  1:289441/140‑1 (MQ=255)

                                                                                                     tttATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGcc                           <  2:151767/140‑1 (MQ=255)

                                                                                                     tttATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGcc                           <  1:351435/140‑1 (MQ=255)

                                                                                                     tttATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTATCTCGTTTCGAAAAAGGACAAAAAATAACGcc                           <  2:1098330/140‑1 (MQ=255)

                                                                                                      ttATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCTTTTCGAAAAAGGACAAAAAATAACGCCa                          >  2:1414924/1‑140 (MQ=255)

                                                                                                      ttATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCa                          <  1:854056/140‑1 (MQ=255)

                                                                                                      ttATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCa                          <  1:807672/140‑1 (MQ=255)

                                                                                                      ttATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATACACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCa                          <  1:1500695/140‑1 (MQ=255)

                                                                                                       tATTGGTGGGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAg                         >  1:861031/1‑140 (MQ=255)

                                                                                                           ggtggGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGt                     <  1:256590/140‑1 (MQ=255)

                                                                                                           ggtggGCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCAGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGt                     <  1:1412173/140‑1 (MQ=255)

                                                                                                               ggCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTAt                 >  2:1142475/1‑140 (MQ=255)

                                                                                                               ggCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTAt                 <  1:911453/140‑1 (MQ=255)

                                                                                                               ggCTGGTGGTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTAt                 <  1:129868/140‑1 (MQ=255)

                                                                                                                  tggtggTGTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCgt              >  2:1491386/1‑140 (MQ=255)

                                                                                                                    gtggtgTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCgtgt            >  2:63045/1‑140 (MQ=255)

                                                                                                                    gtggtgTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCgtgt            <  2:62624/140‑1 (MQ=255)

                                                                                                                    gtggtgTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCgtgt            >  2:1074790/1‑140 (MQ=255)

                                                                                                                    gtggtgTTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCgtgt            <  1:806461/140‑1 (MQ=255)

                                                                                                                      ggtgTTTGTGTCGTCAGCGTTCAATACACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCg          >  2:907196/1‑140 (MQ=255)

                                                                                                                         gtTTGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGata       <  2:957426/140‑1 (MQ=255)

                                                                                                                          tttGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGatat      >  2:1172978/1‑140 (MQ=255)

                                                                                                                          tttGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGatat      <  2:292066/140‑1 (MQ=255)

                                                                                                                          tttGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGatat      >  1:275232/1‑140 (MQ=255)

                                                                                                                          tttGTGTCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGatat      >  1:10274/1‑140 (MQ=255)

                                                                                                                              tgtCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGtt  >  2:851874/1‑140 (MQ=255)

                                                                                                                              tgtCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGtt  >  2:1107079/1‑140 (MQ=255)

                                                                                                                              tgtCGTCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGtt  <  1:821830/140‑1 (MQ=255)

CGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGAGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTT  >  NC_000913/999169‑999434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A