Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A15 F48 I1 R1 115 87.5 3003888 99.1% 2976853 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,011,738 C→A A592E (GCG→GAG)  uup → ATP‑binding protein with possible role in replication

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,011,7380CA100.0% 269.6 / NA 76A592E (GCG→GAG) uupATP‑binding protein with possible role in replication
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (47/29);  total (47/29)

CGCCGCGGCAAAAGCAGAAACTGTAAAACGCAGCAGTAGCAAACTAAGCTATAAATTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGCTGATCG  >  NC_000913/1011604‑1011874
                                                                                                                                      |                                                                                                                                        
cgccgcGGCAAAAGCAGAAACTGTAAAACGCAGCAGTAGCAAACTAAGCTATAAATTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATg                                                                                                                                     >  1:668611/1‑140 (MQ=255)
  ccgcGGCAAAAGCAGAAACTGTAAAACGCAGCAGTAGCAAACTAAGCTATAAATTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGct                                                                                                                                   <  1:248527/140‑1 (MQ=255)
   cgcgGCAAAAGCAGAAACTGTAAAACGCAGCAGTAGCAAACTAAGCTATAAATTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGctt                                                                                                                                  <  1:1410341/140‑1 (MQ=255)
               aGAAACTGTAAAACGCAGCAGTAGCAAACTAAGCTATAAATTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTtcagtc                                                                                                                      <  1:500929/140‑1 (MQ=255)
                gAAACTGTAAAACGCAGCAGTAGCAAACTAAGCTATAAATTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTtcagtca                                                                                                                     <  2:1044208/140‑1 (MQ=255)
                       tAAAACGCAGCAGTAGCAAACTAAGCTATAAATTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCAt                                                                                                              >  1:264816/1‑140 (MQ=255)
                           aCGCAGCAGTAGCAAACTAAGCTATAAATTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGATGATGCTTCCTTCTTCAGTCAGCCGCATGAGc                                                                                                          >  2:651788/1‑140 (MQ=255)
                            cGCAGCAGTAGCAAACTAAGCTATAAATTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCa                                                                                                         <  1:591895/140‑1 (MQ=255)
                               agcagTAGCAAACTAAGCTATAAATTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGAc                                                                                                      >  1:449800/1‑140 (MQ=255)
                               agcagTAGCAAACTAAGCTATAAATTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGAc                                                                                                      >  1:205831/1‑140 (MQ=255)
                                        aaaCTAAGCTATAAATTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGt                                                                                             <  2:972369/140‑1 (MQ=255)
                                           cTAAGCTATAAATTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGtgct                                                                                          <  1:1249134/140‑1 (MQ=255)
                                            tAAGCTATAAATTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTGCAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGtgctt                                                                                         <  2:1044707/140‑1 (MQ=255)
                                              aGCTATAAATTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGtgcttgc                                                                                       >  1:1245035/1‑140 (MQ=255)
                                              aGCTATAAATTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGtgcttgc                                                                                       >  2:173818/1‑140 (MQ=255)
                                              aGCTATAAATTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGtgcttgc                                                                                       >  1:544921/1‑140 (MQ=255)
                                              aGCTATAAATTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGtgcttgc                                                                                       >  1:287083/1‑140 (MQ=255)
                                                cTATAAATTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGtgcttgctt                                                                                     >  2:106840/1‑139 (MQ=255)
                                                cTATAAATTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGtgcttgctt                                                                                     >  2:675899/1‑139 (MQ=255)
                                                cTATAAATTGCAGCGCGAACTGGAGCAGCTACCGCAATTGATCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTg                                                                                     >  1:1054380/1‑140 (MQ=255)
                                                    aaaTTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGatat                                                                                 >  2:1353388/1‑140 (MQ=255)
                                                    aaaTTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGatat                                                                                 <  1:1207700/140‑1 (MQ=255)
                                                        tGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGgct                                                                             >  1:778462/1‑140 (MQ=255)
                                                        tGCAGCGCGAACTGGAGCAGCTACCGCAATTACTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGgct                                                                             >  2:254311/1‑140 (MQ=255)
                                                          cAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGgctgt                                                                           >  2:986676/1‑139 (MQ=255)
                                                          cAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGgctgt                                                                           >  2:164852/1‑139 (MQ=255)
                                                          cAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGgctgc                                                                           >  2:876524/1‑140 (MQ=255)
                                                          cAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGgctgc                                                                           >  2:188561/1‑140 (MQ=255)
                                                          cAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGgctgc                                                                           >  1:1252574/1‑140 (MQ=255)
                                                          cAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGgctgc                                                                           >  1:610209/1‑140 (MQ=255)
                                                          cAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGgctgc                                                                           >  2:1324110/1‑140 (MQ=255)
                                                          cAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGgctgc                                                                           >  2:1232514/1‑140 (MQ=255)
                                                          cAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGgctgc                                                                           >  1:1345115/1‑140 (MQ=255)
                                                          cAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGgctgc                                                                           >  1:967603/1‑140 (MQ=255)
                                                             cgcgAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCtgctgc                                                                        >  2:671963/1‑140 (MQ=255)
                                                             cgcgAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCtgctgc                                                                        >  2:1430830/1‑140 (MQ=255)
                                                             cgcgAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCtgctgc                                                                        >  2:1264901/1‑140 (MQ=255)
                                                             cgcgAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCtgctgc                                                                        >  2:101946/1‑140 (MQ=255)
                                                                  aCTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGc                                                                   <  1:101946/140‑1 (MQ=255)
                                                                  aCTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGc                                                                   <  2:876951/140‑1 (MQ=255)
                                                                              aCCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGc                                                       >  2:1071488/1‑140 (MQ=255)
                                                                                cGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCaa                                                     >  2:1265674/1‑140 (MQ=255)
                                                                                  cAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGc                                                   >  1:139365/1‑140 (MQ=255)
                                                                                     ttGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCtt                                                >  1:432611/1‑140 (MQ=255)
                                                                                     ttGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCtt                                                >  2:1099181/1‑140 (MQ=255)
                                                                                          cGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAAc                                           >  1:571942/1‑140 (MQ=255)
                                                                                            aaGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGc                                         <  2:139365/140‑1 (MQ=255)
                                                                                             aGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCt                                        <  1:1099181/140‑1 (MQ=255)
                                                                                             aGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCt                                        <  2:43400/140‑1 (MQ=255)
                                                                                               aTCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTgg                                      <  1:1165090/140‑1 (MQ=255)
                                                                                               aTCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTgg                                      <  2:449800/140‑1 (MQ=255)
                                                                                                 cTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGa                                    <  2:668611/140‑1 (MQ=255)
                                                                                                 cTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGa                                    <  2:146867/140‑1 (MQ=255)
                                                                                                 cTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGa                                    <  1:254311/140‑1 (MQ=255)
                                                                                                 cTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGa                                    <  1:671963/140‑1 (MQ=255)
                                                                                                 cTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGa                                    <  2:264816/140‑1 (MQ=255)
                                                                                                  tGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAg                                   >  1:1341514/1‑140 (MQ=255)
                                                                                                   ggAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGt                                  <  1:1430830/140‑1 (MQ=255)
                                                                                                       gCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACg                                          <  1:1157017/128‑1 (MQ=255)
                                                                                                       gCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACg                                          >  2:1157017/1‑128 (MQ=255)
                                                                                                       gCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCt                              >  1:920980/1‑140 (MQ=255)
                                                                                                       gCGAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCt                              >  1:1161/1‑140 (MQ=255)
                                                                                                         gAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCttt                            >  2:214077/1‑139 (MQ=255)
                                                                                                         gAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTg                            >  1:1111953/1‑140 (MQ=255)
                                                                                                         gAAGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTg                            >  1:533679/1‑140 (MQ=255)
                                                                                                          aaGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGTTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGa                           >  2:148935/1‑140 (MQ=255)
                                                                                                          aaGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGAAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGa                           <  2:778462/140‑1 (MQ=255)
                                                                                                           aGCTGGAAGCCCTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGaa                          <  1:262461/140‑1 (MQ=255)
                                                                                                                      cTACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTaaaaaa               >  2:428642/1‑140 (MQ=255)
                                                                                                                       tACAGACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAAt              >  2:627137/1‑140 (MQ=255)
                                                                                                                           gACGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAAtggtg          >  1:714371/1‑140 (MQ=255)
                                                                                                                            aCGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAAtggtgg         <  2:1252574/140‑1 (MQ=255)
                                                                                                                            aCGCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAAtggtgg         <  1:214077/140‑1 (MQ=255)
                                                                                                                              gCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGCt       <  2:1245035/140‑1 (MQ=255)
                                                                                                                              gCAAGTGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGCt       <  1:1324110/140‑1 (MQ=255)
                                                                                                                                   tGGAGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGCTTATCg  >  1:378162/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                        
CGCCGCGGCAAAAGCAGAAACTGTAAAACGCAGCAGTAGCAAACTAAGCTATAAATTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGCTGATCG  >  NC_000913/1011604‑1011874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A