Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	83,714	C→A	intergenic (‑6/‑654)	leuL ← / → leuO	leu operon leader peptide/DNA‑binding transcriptional dual regulator LeuO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	83,714	0	C	A	100.0%	455.4 / NA	130	intergenic (‑6/‑654)	leuL/leuO	leu operon leader peptide/DNA‑binding transcriptional dual regulator LeuO
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (85/45); total (85/45)

Only 100 of 131 total aligned reads displayed.

AAACCCGCGCAATGGCGCGGGTTTTTTGTTTGACTGCGTGCTGGCTTAATGCTGGATGCCGCTCACTCGTCTACCGCGCAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATCAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATTGTGCTGCGGTGGTTAAA  >  NC_000913/83577‑83848

aaaCCCGCGCAATGGCGCGGGTTTTTTGTTTGACTGCGTGCTGGCTTAATGCTGGATGCCGCTCACTCGTCTACCGCGCAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAg                                                                                                                                       <  1:139680/140‑1 (MQ=255)

  aCCCGCGCAATGGCGCGGGTTTTTTGTTTGACTGCGTGCTGGCTTAATGCTGGATGCCGCTCACTCGTCTACCGCGCAAAGAAGATGTGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCt                                                                                                                                     <  2:1144543/140‑1 (MQ=255)

      gcgcAATGGCGCGGGTTTTTTGTTTGACTGCGTGCTGGCTTAATGCTGGATGCCGCTCACTCGTCTACCGCGCAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAg                                                                                                                                 >  1:1325219/1‑140 (MQ=255)

      gcgcAATGGCGCGGGTTTTTTGTTTGACTGCGTGCTGGCTTAATGCTGGATGCCGCTCACTCGTCTACCGCGCAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAg                                                                                                                                 >  2:1723952/1‑140 (MQ=255)

       cgcAATGGCGCGGGTTTTTTGTTTGACTGCGTGCTGGCTTAATGCTGGATGCCGCTCACTCGTCTACCGCGCAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAgt                                                                                                                                >  2:821119/1‑139 (MQ=255)

                 cgGGTTTTTTGTTTGACTGCGTGCTGGCTTAATGCTGGATGCCGCTCACTCGTCTACCGCGCAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGat                                                                                                                      >  1:147766/1‑140 (MQ=255)

                  gggTTTTTTGTTTGACTGCGTGCTGGCTTAATGCTGGATGCCGCTCACTCGTCTACCGCGCAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGata                                                                                                                     <  1:1021288/140‑1 (MQ=255)

                  gggTTTTTTGTTTGACTGCGTGCTGGCTTAATGCTGGATGCCGCTCACTCGTCTACCGCGCAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGata                                                                                                                     <  1:1620088/140‑1 (MQ=255)

                      tttttGTTTGACTGCGTGCTGGCTTAATGCTGGATGCCGCTCACTCGTCTACCGCGCAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCt                                                                                                                 <  1:1470748/140‑1 (MQ=255)

                             ttgACTGCGTGCTGGCTTAATGCTGGATGCCGCTCACTCGTCTACCGCGCAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTag‑at                                                                                                         >  2:840101/1‑139 (MQ=255)

                              tgACTGCGTGCTGGCTTAATGCTGGATGCCGCTCACTCGTCTACCGCGCAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGata                                                                                                                     <  1:946669/128‑1 (MQ=255)

                                aCTGCGTGCTGGCTTAATGCTGGATGCCGCTCACTCGTCTACCGCGCAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTa                                                                                                      <  2:702309/140‑1 (MQ=255)

                                      tGCTGGCTTAATGCTGGATGCCGCTCACTCGTCTACCGCGCAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGAt                                                                                                >  2:1312984/1‑140 (MQ=255)

                                               aaTGCTGGATGCCGCTCACTCGTCTACCGCGCAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACg                                                                                       <  1:1585972/140‑1 (MQ=255)

                                                     ggATGCCGCTCACTCGTCTACCGCGCAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATTAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTc                                                                                 >  1:1796875/1‑140 (MQ=255)

                                                     ggATGCCGCTCACTCGTCTACCGCGCAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTc                                                                                 >  2:1098397/1‑140 (MQ=255)

                                                     ggATGCCGCTCACTCGTCTACCGCGCAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTc                                                                                 >  2:1040011/1‑140 (MQ=255)

                                                      gATGCCGCTCACTCGTCTACCGCGCAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCa                                                                                >  1:1893078/1‑140 (MQ=255)

                                                           cGCTCACTCGTCTACCGCGCAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCt                                                                           >  1:1661721/1‑140 (MQ=255)

                                                           cGCTCACTCGTCTACCGCGCAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCt                                                                           >  1:2029210/1‑140 (MQ=255)

                                                             cTCACTCGTCTACCGCGCAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGa                                                                         <  2:391630/140‑1 (MQ=255)

                                                                      cTACCGCGCAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATaaa                                                                <  1:840101/140‑1 (MQ=255)

                                                                            cgcAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTc                                                          >  1:1553976/1‑140 (MQ=255)

                                                                            cgcAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTc                                                          >  1:403596/1‑140 (MQ=255)

                                                                            cgcAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTc                                                          >  1:23670/1‑140 (MQ=255)

                                                                            cgcAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTc                                                          >  1:1381628/1‑140 (MQ=255)

                                                                            cgcAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTc                                                          >  2:1841406/1‑140 (MQ=255)

                                                                              cAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTccc                                                        >  2:1882890/1‑140 (MQ=255)

                                                                              cAAAGAAGATGCGTTTAGTAGTAGTAGACCGAGAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTccc                                                        >  1:1534373/1‑140 (MQ=255)

                                                                                      aTGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATTAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGt                                                <  2:1796875/140‑1 (MQ=255)

                                                                                         cGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAg                                             >  1:1526423/1‑140 (MQ=255)

                                                                                           tttAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGtt                                           >  1:210467/1‑140 (MQ=255)

                                                                                                   tagtagACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATcc                                   >  2:1305591/1‑140 (MQ=255)

                                                                                                   tagtagACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATcc                                   >  1:6225/1‑140 (MQ=255)

                                                                                                   aagtaaACCGTTAAAGCGAACGAGTGGGGCCATAAAAAAAGCTCCAGATGAAGGCGATAT‑TTTTTAGAAGTTCCTGGATCAAAAAACGGATTTCAACCCTGCCGCAATAAAACCTTCCCGTTAGCGTGAGTTCTGCATcc                                   <  2:1612334/139‑1 (MQ=255)

                                                                                                    agtagACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCg                                  <  1:392634/140‑1 (MQ=255)

                                                                                                     gtagACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGt                                 >  1:1931314/1‑140 (MQ=255)

                                                                                                     gtagACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGt                                 >  1:1997876/1‑140 (MQ=255)

                                                                                                     gtagACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGt                                 >  1:729762/1‑140 (MQ=255)

                                                                                                     gtagACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGt                                 >  2:1358869/1‑140 (MQ=255)

                                                                                                      tagACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGt                                                <  2:1885506/124‑1 (MQ=255)

                                                                                                        gACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTaaa                              >  1:1382590/1‑140 (MQ=255)

                                                                                                        gACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTaaa                              >  2:1375357/1‑140 (MQ=255)

                                                                                                        gACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTaaa                              >  1:911801/1‑140 (MQ=255)

                                                                                                        gACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTaaa                              >  1:1805994/1‑140 (MQ=255)

                                                                                                        gACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTaaa                              >  2:2145204/1‑140 (MQ=255)

                                                                                                        gACCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTaaa                              >  2:1597707/1‑140 (MQ=255)

                                                                                                         aCCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTaaaa                             >  1:840403/1‑140 (MQ=255)

                                                                                                         aCCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTaaaa                             >  1:250132/1‑140 (MQ=255)

                                                                                                         aCCGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTaaaa                             >  1:208018/1‑140 (MQ=255)

                                                                                                          ccGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAAt                            >  2:473877/1‑140 (MQ=255)

                                                                                                          ccGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAAt                            >  2:1481609/1‑140 (MQ=255)

                                                                                                          ccGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAAt                            >  2:1488256/1‑140 (MQ=255)

                                                                                                          ccGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAAt                            >  1:2150227/1‑140 (MQ=255)

                                                                                                           cGATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAGAtt                           >  1:1333536/1‑140 (MQ=255)

                                                                                                            gATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTa                          <  2:911801/140‑1 (MQ=255)

                                                                                                            gATAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCAATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGAAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTa                          <  1:1040011/140‑1 (MQ=255)

                                                                                                             aTAAAGCGAACGATGTGAGTCATTAAATATGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAg                         >  1:1904020/1‑140 (MQ=255)

                                                                                                             aTAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAGATTAg                         >  2:1315286/1‑140 (MQ=255)

                                                                                                             aTAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTaa                         >  2:124648/1‑139 (MQ=255)

                                                                                                             aTAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAg                         >  1:939886/1‑140 (MQ=255)

                                                                                                             aTAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAg                         >  2:1939071/1‑140 (MQ=255)

                                                                                                             aTAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAg                         >  1:1861239/1‑140 (MQ=255)

                                                                                                             aTAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAg                         >  2:109710/1‑140 (MQ=255)

                                                                                                             aTAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAg                         >  1:2051002/1‑140 (MQ=255)

                                                                                                             aTAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAg                         >  1:1645979/1‑140 (MQ=255)

                                                                                                             aTAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAg                         >  1:274403/1‑140 (MQ=255)

                                                                                                             aTAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAg                         >  2:1407369/1‑140 (MQ=255)

                                                                                                             aTAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAg                         >  1:430124/1‑140 (MQ=255)

                                                                                                             aTAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAg                         >  1:450346/1‑140 (MQ=255)

                                                                                                             aTAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAg                         >  2:776482/1‑140 (MQ=255)

                                                                                                             aTAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAg                         >  1:134865/1‑140 (MQ=255)

                                                                                                             aTAAAGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAg                         >  2:1275256/1‑140 (MQ=255)

                                                                                                                 aGCGAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTaa                     <  2:6225/140‑1 (MQ=255)

                                                                                                                    gAACGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATtg                  >  1:1871320/1‑140 (MQ=255)

                                                                                                                     aaCGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATtgt                 >  2:50274/1‑140 (MQ=255)

                                                                                                                     aaCGATGTGAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATtgt                 >  2:1832828/1‑140 (MQ=255)

                                                                                                                          tgtgAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATTGtgctgc            <  1:1041203/140‑1 (MQ=255)

                                                                                                                           gtgAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATTGTGCTGCg           <  1:1474938/140‑1 (MQ=255)

                                                                                                                           gtgAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATTGTGCTGCg           <  2:711700/140‑1 (MQ=255)

                                                                                                                           gtgAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATTGTGCTGCg           <  2:274403/140‑1 (MQ=255)

                                                                                                                           gtgAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATTGTGCTGCg           <  1:1890454/140‑1 (MQ=255)

                                                                                                                           gtgAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATTGTGCTGCg           <  1:1882890/140‑1 (MQ=255)

                                                                                                                           gtgAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATTGTGCTGCg           <  2:134865/140‑1 (MQ=255)

                                                                                                                           gtgAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATTGTGCTGCg           <  1:2145204/140‑1 (MQ=255)

                                                                                                                           gtgAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATAAAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATTGTGCTGCg           <  2:1212055/140‑1 (MQ=255)

                                                                                                                           gtgAGTCATTAAAAAAGCTCCAGATGAATGCAATATGCTTTTAG‑AGTTACTGGATACAAAAACGAATGTCAACCCTAACGCAAAAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATTGTGCTGCg           <  2:1390471/140‑1 (MQ=255)

                                                                                                                           atgAGTAATTAAAAAAGCTCCAGATGAATGCGATATGCTTTTAA‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATTGTGCTGCg           <  2:23670/139‑1 (MQ=255)

                                                                                                                            ggAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATTGTGCTGCgg          <  1:689392/139‑1 (MQ=255)

                                                                                                                             gAGTCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATTGTGCTGCggt         >  2:265405/1‑140 (MQ=255)

                                                                                                                                tCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATTGTGCTGCggtggt      <  1:1832828/140‑1 (MQ=255)

                                                                                                                                tCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATTGTGCTGCggtggt      <  1:220222/140‑1 (MQ=255)

                                                                                                                                tCATTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATTGTGCTGCggtggt      <  2:1382590/140‑1 (MQ=255)

                                                                                                                                  aTTAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGGCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTTAGTTCTGCATCCTTAAAATTAGCTAATTGTGCTGCGTTGGTTa    >  1:2021748/1‑140 (MQ=255)

                                                                                                                                    tAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATTGTGCTGCGGTGGTTaaa  >  2:449060/1‑140 (MQ=255)

                                                                                                                                    tAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATTGTGCTGCGGTGGTTaaa  >  2:2053977/1‑140 (MQ=255)

                                                                                                                                    tAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATTGTGCTGCGGTGGTTaaa  >  1:54228/1‑140 (MQ=255)

                                                                                                                                    tAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATTGTGCTGCGGTGGTTaaa  >  1:1233856/1‑140 (MQ=255)

                                                                                                                                    tAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATTGTGCTGCGGTGGTTaaa  >  2:898956/1‑140 (MQ=255)

                                                                                                                                    tAAATAAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATTGTGCTGCGGTGGTTaaa  >  2:922499/1‑140 (MQ=255)

AAACCCGCGCAATGGCGCGGGTTTTTTGTTTGACTGCGTGCTGGCTTAATGCTGGATGCCGCTCACTCGTCTACCGCGCAAAGAAGATGCGTTTAGTAGTAGTAGACCGATAAAGCGAACGATGTGAGTCATTAAATCAGCTCCAGATGAATGCGATATGCTTTTAG‑AGTTACTGGATACAAAAACGGATGTCAACCCTGACGCAATAAAAACGTCCCGCCAGCGTGAGTTCTGCATCCGTAAAATTAGCTAATTGTGCTGCGGTGGTTAAA  >  NC_000913/83577‑83848

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A