Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	131,516	C→A	intergenic (‑256/‑99)	yacH ← / → acnB	DUF3300 domain‑containing protein YacH/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	131,516	0	C	A	100.0%	443.9 / NA	127	intergenic (‑256/‑99)	yacH/acnB	DUF3300 domain‑containing protein YacH/hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (73/54); total (73/54)

Only 100 of 128 total aligned reads displayed.

TGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCCGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAAGAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGTAAGCACGTAGCTGAGCGTG  >  NC_000913/131380‑131651

tGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGtt                                                                                                                                      >  2:739140/1‑140 (MQ=255)

 gATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTg                                                                                                                                     <  2:1230025/140‑1 (MQ=255)

 gATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTg                                                                                                                                     <  1:686461/140‑1 (MQ=255)

 gATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTg                                                                                                                                     <  2:2046411/140‑1 (MQ=255)

 gATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTg                                                                                                                                     <  1:360594/140‑1 (MQ=255)

  aTTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGc                                                                                                                                    >  2:593169/1‑140 (MQ=255)

         ccATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACtt                                                                                                                             >  2:230564/1‑139 (MQ=255)

         ccATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTg                                                                                                                             <  2:1260980/140‑1 (MQ=255)

         ccATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTg                                                                                                                             >  1:794936/1‑140 (MQ=255)

            tGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGc                                                                                                                          >  1:1476736/1‑140 (MQ=255)

            tGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGc                                                                                                                          >  2:448244/1‑140 (MQ=255)

               gAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCAtt                                                                                                                       <  2:1231175/140‑1 (MQ=255)

                    aaCGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTAccc                                                                                                                  >  1:683658/1‑140 (MQ=255)

                      cGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACCCCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTGCCCTa                                                                                                                <  1:574982/140‑1 (MQ=255)

                        aaGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACa                                                                                                              <  1:230564/140‑1 (MQ=255)

                           tttttACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAAc                                                                                                           >  2:955037/1‑140 (MQ=255)

                             tttACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAActg                                                                                                         <  1:93919/140‑1 (MQ=255)

                             tttACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAActg                                                                                                         <  2:181485/140‑1 (MQ=255)

                              ttACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAActgc                                                                                                        <  1:57139/140‑1 (MQ=255)

                              ttACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAActgc                                                                                                        <  1:719066/140‑1 (MQ=255)

                                aCGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAActgctg                                                                                                      <  1:261597/140‑1 (MQ=255)

                                     gggAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTca                                                                                                 >  2:831359/1‑140 (MQ=255)

                                         aaCAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAgg                                                                                             <  2:1214178/140‑1 (MQ=255)

                                         aaCAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAgg                                                                                             <  1:2128614/140‑1 (MQ=255)

                                            aaTCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGc                                                                                          <  2:667464/140‑1 (MQ=255)

                                            aaTCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGc                                                                                          <  1:367260/140‑1 (MQ=255)

                                                tctAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGa                                                                                      <  2:794936/140‑1 (MQ=255)

                                                  tAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGaat                                                                                    >  2:388000/1‑139 (MQ=255)

                                                  tAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGaat                                                                                    >  2:349005/1‑139 (MQ=255)

                                                         tCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGTATAGAATCg                                                                             >  1:773570/1‑140 (MQ=255)

                                                         tCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCg                                                                             >  1:69555/1‑140 (MQ=255)

                                                         tCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCg                                                                             >  2:1631316/1‑140 (MQ=255)

                                                         tCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCg                                                                             >  1:1518071/1‑140 (MQ=255)

                                                          ccTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGc                                                                            >  2:935874/1‑140 (MQ=255)

                                                          ccTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGc                                                                            >  1:1806964/1‑140 (MQ=255)

                                                          ccTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGc                                                                            <  2:1916520/140‑1 (MQ=255)

                                                          ccTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGc                                                                            >  1:1322998/1‑140 (MQ=255)

                                                          ccTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGc                                                                            >  1:1332054/1‑140 (MQ=255)

                                                            ttAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCt                                                                          >  1:13513/1‑140 (MQ=255)

                                                              aaCGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGc                                                                        >  2:1379151/1‑140 (MQ=255)

                                                              aaCGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGc                                                                        <  1:955037/140‑1 (MQ=255)

                                                              aaCGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGc                                                                        >  2:583654/1‑140 (MQ=255)

                                                              aaCGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGc                                                                        >  2:885889/1‑140 (MQ=255)

                                                               aCGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGcc                                                                       >  1:1894773/1‑140 (MQ=255)

                                                                agATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCg                                                                      <  2:1806964/139‑1 (MQ=255)

                                                                 gATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGc                                                                     >  2:1202553/1‑140 (MQ=255)

                                                                  actCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCa                                                                    <  2:1332054/138‑1 (MQ=255)

                                                                  aTTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCa                                                                    <  2:1049517/140‑1 (MQ=255)

                                                                   ttCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCAc                                                                   >  1:1599907/1‑140 (MQ=255)

                                                                    tCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACt                                                                  >  1:433034/1‑140 (MQ=255)

                                                                    tCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACt                                                                  <  1:795875/140‑1 (MQ=255)

                                                                     cAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTa                                                                 >  1:1413318/1‑140 (MQ=255)

                                                                     cAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTa                                                                 >  2:88175/1‑140 (MQ=255)

                                                                      tgCCACTTTTTTCTGTTGCTTTTTTGTAAACAGTTTAACACCTCGTCAAAATCCTCCTATTCTGCCAGTTGCGGAACTGCTCATTTACCCTACAAACTTCTGTCTCCCAGGAGCTTGAATAGAATCGCCTGCCGCACTAt                                                                >  2:2026370/2‑140 (MQ=255)

                                                                           attttttATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACaa                                                           <  2:69555/139‑1 (MQ=255)

                                                                              ttttATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGTATAGAATCGCCTGCCGCACTATGACAATga                                                        <  2:773570/140‑1 (MQ=255)

                                                                              ttttATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATga                                                        >  1:514177/1‑140 (MQ=255)

                                                                                   tGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCg                                                   <  2:514177/140‑1 (MQ=255)

                                                                                     ttGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCgag                                                 <  2:13513/140‑1 (MQ=255)

                                                                                     ttGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCgag                                                 <  1:388000/140‑1 (MQ=255)

                                                                                        cTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCgaggag                                              >  1:1246692/1‑140 (MQ=255)

                                                                                             ttGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACcg                                         <  1:349005/140‑1 (MQ=255)

                                                                                              tGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACcgt                                        <  1:2026370/140‑1 (MQ=255)

                                                                                              tGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACcgt                                        <  2:399524/140‑1 (MQ=255)

                                                                                              tGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACcgt                                        <  2:1998141/140‑1 (MQ=255)

                                                                                                   aCAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGc                                   <  2:1599907/140‑1 (MQ=255)

                                                                                                   aCAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGc                                   <  1:268555/140‑1 (MQ=255)

                                                                                                       aTTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTaga                               >  1:1417447/1‑140 (MQ=255)

                                                                                                       aTTAACACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTaga                               >  1:2066665/1‑140 (MQ=255)

                                                                                                          aaCACCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTagaaga                            <  1:1379151/140‑1 (MQ=255)

                                                                                                           acacCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAgaagaa                           <  2:1476736/140‑1 (MQ=255)

                                                                                                            cacCTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAAt                          >  1:2029617/1‑140 (MQ=255)

                                                                                                               cTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATAcc                       >  2:964433/1‑140 (MQ=255)

                                                                                                               cTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATAcc                       >  1:1633664/1‑140 (MQ=255)

                                                                                                               cTCGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATAcc                       >  2:1145722/1‑140 (MQ=255)

                                                                                                                 cGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATTGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGt                     >  2:1681884/1‑140 (MQ=255)

                                                                                                                 cGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAgaagaa                           >  1:1509155/1‑134 (MQ=255)

                                                                                                                 cGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGt                     <  1:593169/140‑1 (MQ=255)

                                                                                                                 cGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGt                     >  2:1236774/1‑140 (MQ=255)

                                                                                                                 cGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGt                     >  1:12234/1‑140 (MQ=255)

                                                                                                                 cGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGt                     >  2:1210919/1‑140 (MQ=255)

                                                                                                                 cGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGt                     >  1:1689726/1‑140 (MQ=255)

                                                                                                                 cGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGt                     >  1:1793482/1‑140 (MQ=255)

                                                                                                                 cGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGt                     >  1:191972/1‑140 (MQ=255)

                                                                                                                 cGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGt                     >  1:1993291/1‑140 (MQ=255)

                                                                                                                 cGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGt                     >  2:1794766/1‑140 (MQ=255)

                                                                                                                 cGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGt                     >  1:751009/1‑140 (MQ=255)

                                                                                                                 cGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGt                     >  1:750121/1‑140 (MQ=255)

                                                                                                                 cGTCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGt                     >  2:1883457/1‑140 (MQ=255)

                                                                                                                   tCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGTaa                   <  2:1793482/140‑1 (MQ=255)

                                                                                                                   tCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGTaa                   >  1:987751/1‑140 (MQ=255)

                                                                                                                   tCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGTaa                   <  1:583654/140‑1 (MQ=255)

                                                                                                                   tCAAAATCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGTaa                   >  2:1953237/1‑140 (MQ=255)

                                                                                                                      aaaTCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGTAAGCa                <  2:298389/140‑1 (MQ=255)

                                                                                                                       aaTCCTGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATCCCGTAAGCAc               <  1:1681884/140‑1 (MQ=255)

                                                                                                                            tGCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGTAAGCACGTAGc          >  1:1875766/1‑140 (MQ=255)

                                                                                                                             gCTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGTAAGCACGTAGCt         <  2:751009/140‑1 (MQ=255)

                                                                                                                              cTATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGTAAGCACGTAGCTg        >  1:1813734/1‑140 (MQ=255)

                                                                                                                               tATTCTGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGTAAGCACGTAGCTGa       <  1:448244/140‑1 (MQ=255)

                                                                                                                                    tGCCAGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAATAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGTAAGCACGTAGCTGAGCGTg  <  2:886360/140‑1 (MQ=255)

TGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCCGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAAGAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGCTAGAAGAATACCGTAAGCACGTAGCTGAGCGTG  >  NC_000913/131380‑131651

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A