Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F48 I1 R1
|
508 |
125.6 |
4303852 |
99.2% |
4269421 |
139.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
248,985 |
G→T |
pseudogene (1086/1713 nt) |
lfhA ← |
flagellar system protein, promoterless fragment |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 248,985 | 0 | G | T | 97.7%
| 286.6
/ ‑3.7
| 87 | pseudogene (1086/1713 nt) | lfhA | flagellar system protein, promoterless fragment |
| Reads supporting (aligned to +/- strand): ref base G (2/0); new base T (42/43); total (44/43) |
| Fisher's exact test for biased strand distribution p-value = 4.94e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCACGCCGTCAATCTCGCCGTAGG > NC_000913/248848‑249121
|
aaCTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATgtgt > 1:355114/1‑140 (MQ=255)
aCTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTa < 1:2003823/140‑1 (MQ=255)
tGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGc > 2:269433/1‑140 (MQ=255)
gCTGTAATTGAGCGCCGCGCTCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGa < 2:2151145/140‑1 (MQ=255)
aaTTGAGCGCCGCGCTCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACg < 1:1899158/140‑1 (MQ=255)
aTTGAGCGCCGCGCTCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGc < 2:355114/140‑1 (MQ=255)
gAGCGCCGCGCTCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTgg < 1:226837/140‑1 (MQ=255)
aGCGCCGCGCTCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGgc > 2:1017192/1‑140 (MQ=255)
aGCGCCGCGCTCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGgc > 2:905189/1‑140 (MQ=255)
aGCGCCGCGCTCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGgc > 2:1648493/1‑140 (MQ=255)
cgccgcGCTCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGgcgc < 2:1198416/140‑1 (MQ=255)
ccgcGCTCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTg < 2:1678551/140‑1 (MQ=255)
cgcgCTCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGt > 2:530435/1‑140 (MQ=255)
cgcgCTCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGt > 1:1024191/1‑140 (MQ=255)
gcgcTCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTc < 1:1163861/140‑1 (MQ=255)
cgcTCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCg > 2:1638096/1‑140 (MQ=255)
gcTCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGa < 2:270303/140‑1 (MQ=255)
cTCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGAt < 1:359560/140‑1 (MQ=255)
tCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATc < 2:2107239/140‑1 (MQ=255)
aaTCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCAcc < 2:949608/140‑1 (MQ=255)
tCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTg < 1:1840501/140‑1 (MQ=255)
ttCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGAt < 2:1284908/140‑1 (MQ=255)
ttCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGAt < 1:905189/140‑1 (MQ=255)
ttCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGAt < 2:1362664/140‑1 (MQ=255)
ttCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGAt < 2:529923/140‑1 (MQ=255)
ttCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGAt < 2:1637426/140‑1 (MQ=255)
ttCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGAt > 1:529923/1‑140 (MQ=255)
ttCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGAt < 1:1190917/140‑1 (MQ=255)
acAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATAcccc < 2:1024191/139‑1 (MQ=255)
ggTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAg < 1:1530579/140‑1 (MQ=255)
tGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAgcg < 1:1017192/140‑1 (MQ=255)
tCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTc > 2:1120658/1‑140 (MQ=255)
gaTAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCttt > 2:381566/1‑140 (MQ=255)
ttATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGcgccgc < 1:253271/140‑1 (MQ=255)
ttATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGcgccgc < 1:1648493/140‑1 (MQ=255)
aTGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCt < 1:2122332/140‑1 (MQ=255)
aTGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCt < 1:1111341/140‑1 (MQ=255)
tGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTg > 1:1907343/1‑140 (MQ=255)
tGCAACTGCGTAATATAATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTg > 1:71567/1‑140 (MQ=255)
gCGTAATATCATCAGAGTTGAACAAATCGGGAGTATAGCGGCGCATAATCTTAGTTACATGGGGAACGATCACGCTGGCGCTGTCGATCATCAGATACCCCATTTTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAg > 1:2021716/1‑140 (MQ=255)
gTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGt > 2:949177/1‑140 (MQ=255)
catcatAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGc < 1:1638096/140‑1 (MQ=255)
tcatAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCAt > 1:587213/1‑140 (MQ=255)
tcatAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCAt > 1:29444/1‑140 (MQ=255)
tcatAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCAt > 2:1026002/1‑140 (MQ=255)
tcatAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTCCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCAt > 1:1850082/1‑140 (MQ=255)
atAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCCGGATCCAGGTGACCGGCATcc > 2:1025493/1‑140 (MQ=255)
tAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATccc > 1:1486865/1‑140 (MQ=255)
gTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGt > 1:1250043/1‑140 (MQ=255)
ttAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTa > 2:1466801/1‑140 (MQ=255)
ttAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTa > 1:1865916/1‑140 (MQ=255)
aaCAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGc > 2:793304/1‑140 (MQ=255)
aaCAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGc < 2:454533/140‑1 (MQ=255)
cAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCg > 1:100673/1‑140 (MQ=255)
cAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCg > 1:2074642/1‑140 (MQ=255)
aaaaTCAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCACATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCg < 2:1850082/139‑1 (MQ=255)
aTCAGGAATATAGCGGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGt > 1:2038005/1‑140 (MQ=255)
cAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCg < 2:100673/140‑1 (MQ=255)
cAGGAATATAGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCg < 1:2122772/140‑1 (MQ=255)
taGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTg > 1:726963/1‑140 (MQ=255)
taGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTg > 1:866768/1‑140 (MQ=255)
taGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTg > 1:1676508/1‑140 (MQ=255)
taGCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTg > 1:939187/1‑140 (MQ=255)
gCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCa < 2:2038005/140‑1 (MQ=255)
gCTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCa < 1:2069088/140‑1 (MQ=255)
cTGCGCACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCAc < 2:726963/140‑1 (MQ=255)
gcgcACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCACGc > 2:218373/1‑140 (MQ=255)
cgcACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCACGcc > 1:1240736/1‑140 (MQ=255)
cgcACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCACGcc > 1:187847/1‑140 (MQ=255)
cgcACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTCCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCa > 1:1706336/1‑136 (MQ=255)
cgcACAATCTTAATTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTCCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCa < 2:1706336/136‑1 (MQ=255)
gcACAATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCACGcct > 1:573511/1‑139 (MQ=255)
cacaATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCACGCCGt > 2:862594/1‑140 (MQ=255)
cacaATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCACGCCGt > 1:1204127/1‑140 (MQ=255)
cacaATCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCACGCCGt > 1:1003504/1‑140 (MQ=255)
aTCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCACGCCGTCAAt < 2:1865916/140‑1 (MQ=255)
aTCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCACGCCGTCAAt < 2:1240736/140‑1 (MQ=255)
tCTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCACGCCGTCAAtc < 2:2074642/140‑1 (MQ=255)
cTTATTTACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCACGCCGTCAAtct < 1:1026002/140‑1 (MQ=255)
tttACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCACGCCGTCAATCTCGcc < 2:71567/140‑1 (MQ=255)
tttACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCACGCCGTCAATCTCGcc > 1:227070/1‑140 (MQ=255)
ttACATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCACGCCGTCAATCTCGCCg < 1:530435/140‑1 (MQ=255)
aCATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCACGCCGTCAATCTCGCCGTa > 1:1855461/1‑140 (MQ=255)
aCATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCACGCCGTCAATCTCGCCGTa < 2:187847/140‑1 (MQ=255)
aCATGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCACGCCGTCAATCTCGCCGTa < 1:1466801/140‑1 (MQ=255)
aTGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCACGCCGTCAATCTCGCCGTAgg > 2:448016/1‑140 (MQ=255)
aTGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCACGCCGTCAATCTCGCCGTAgg < 1:449759/140‑1 (MQ=255)
aTGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCACGCCGTCAATCTCGCCGTAgg > 2:1332836/1‑140 (MQ=255)
aTGTGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCACGCCGTCAATCTCGCCGTAgg > 2:907226/1‑140 (MQ=255)
|
AACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGCGATCACGCTGGCGCTGTCGATCACCTGATACCCCATATTCAGCGCCTTCGCTTTCTGCGCCGCCTGGATCCAGGTGACCGGCATCCCGTACGCCGGGTCGTTCCCCTGCACGCCGTCAATCTCGCCGTAGG > NC_000913/248848‑249121
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
