Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	287,001	C→A	G71G (GGC→GGA)	yagH →	CP4‑6 prophage; putative xylosidase/arabinosidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	287,001	0	C	A	100.0%	324.1 / NA	96	G71G (GGC→GGA)	yagH	CP4‑6 prophage; putative xylosidase/arabinosidase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (50/46); total (50/46)

Only 100 of 107 total aligned reads displayed.

CGCCACCTCGACCTTCGAGTGGTTCCCGGGCGTGCGCATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGCATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAG  >  NC_000913/286866‑287135

cGCCACCTCGACCTTCGAGTGGTTCCCGGGCGTGCGCATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCTCGTGTCGATGCTGGACATGAA‑GGCAACCCGGACTCCGGCGGAATCTg                                                                                                                                   >  2:1280981/1‑140 (MQ=255)

cGCCACCTCGACCTTCGAGTGGTTCCCGGGCGTGCGCATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCt                                                                                                                                    >  2:1899379/1‑140 (MQ=255)

cGCCACCTCGACCTTCGAGTGGTTCCCGGGCGTGCGCATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCt                                                                                                                                    >  2:812588/1‑140 (MQ=255)

 gCCACCTCGACCTTCGAGTGGTTCCCGGGCGTGCGCATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTg                                                                                                                                   <  1:1819461/140‑1 (MQ=255)

  ccACCTCGACCTTCGAGTGGTTCCCGGGCGTGCGCATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTgg                                                                                                                                  >  1:1010460/1‑140 (MQ=255)

  ccACCTCGACCTTCGAGTGGTTCCCGGGCGTGCGCATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTgg                                                                                                                                  >  1:996088/1‑140 (MQ=255)

  ccACCTCGACCTTCGAGTGGTTCCCGGGCGTGCGCATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTgg                                                                                                                                  >  1:930925/1‑140 (MQ=255)

  ccACCTCGACCTTCGAGTGGTTCCCGGGCGTGCGCATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTgg                                                                                                                                  >  2:647951/1‑140 (MQ=255)

     ccTCGACCTTCGAGTGGTTCCCGGGCGTGCGCATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGgcg                                                                                                                               >  2:2073606/1‑140 (MQ=255)

     ccTCGACCTTCGAGTGGTTCCCGGGCGTGCGCATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGgcg                                                                                                                               >  1:1355703/1‑140 (MQ=255)

     ccTCGACCTTCGAGTGGTTCCCGGGCGTGCGCATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAA‑GGCAACCCGGACTCCGGCGGAATCTGGgcgc                                                                                                                              <  1:1280981/140‑1 (MQ=255)

      cTCGACCTTCGAGTGGTTCCCGGGCGTGCGCATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGgcgc                                                                                                                              >  1:539246/1‑140 (MQ=255)

       tCGACCTTCGAGTGGTTCCCGGGCGTGCGCATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGcc                                                                                                                             <  1:586208/140‑1 (MQ=255)

       tCGACCTTCGAGTGGTTCCCGGGCGTGCGCATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGcc                                                                                                                             <  2:1855415/140‑1 (MQ=255)

           ccTTCGAGTGGTTCCCGGGCGTGCGCATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGc                                                                                                                         <  2:1251/140‑1 (MQ=255)

                 aGTGGTTCCCGGGCGTGCGCATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGc                                                                                                                   >  1:1040799/1‑140 (MQ=255)

                     gTTCCCGGGCGTGCGCATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACg                                                                                                               >  2:78655/1‑140 (MQ=255)

                       tCCCGGGCGTGCGCATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGcc                                                                                                             <  2:1789683/140‑1 (MQ=255)

                       tCCCGGGCGTGCGCATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGcc                                                                                                             <  2:237680/140‑1 (MQ=255)

                        cccGGGCGTGCGCATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCg                                                                                                            <  1:647951/140‑1 (MQ=255)

                              ggTGCGCATCTACCACTCCCGTGACCTGGAAAACTGGTCGCTGGTCAGCTCCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAACCTGGGCGCCGTGCCTGGGCTACGCCGACGGTa                                                                                                      <  2:2013387/139‑1 (MQ=255)

                               gTGCGCATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGTTGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTaa                                                                                                     >  1:105694/1‑140 (MQ=255)

                               gTGCGCATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTaa                                                                                                     <  1:1056592/140‑1 (MQ=255)

                                tGCGCATCTACGACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAACACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTaaa                                                                                                    >  1:1807219/1‑140 (MQ=255)

                                ggcgcATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTaaa                                                                                                    >  1:1658834/2‑140 (MQ=255)

                                  cgcATCTACCACTCCCGTGATCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTTGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAAtt                                                                                                  >  1:1061009/1‑140 (MQ=255)

                                    cATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCt                                                                                                <  1:1696753/140‑1 (MQ=255)

                                    cATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCt                                                                                                <  2:1658834/140‑1 (MQ=255)

                                      tCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTgg                                                                                              <  2:1737012/140‑1 (MQ=255)

                                      tCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTgg                                                                                              <  2:930925/140‑1 (MQ=255)

                                      tCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTgg                                                                                              <  2:1010460/140‑1 (MQ=255)

                                      tCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTgg                                                                                              <  2:539246/140‑1 (MQ=255)

                                      tCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTgg                                                                                              <  2:1040799/140‑1 (MQ=255)

                                      tCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAACACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTgg                                                                                              <  2:1807219/140‑1 (MQ=255)

                                      acTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTgg                                                                                              <  2:1809500/139‑1 (MQ=255)

                                       cTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGgc                                                                                             <  2:902132/140‑1 (MQ=255)

                                         cccACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGgctg                                                                                           <  1:476847/139‑1 (MQ=255)

                                         aCCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGgctg                                                                                           >  1:2103376/1‑140 (MQ=255)

                                           cACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGgctgct                                                                                         >  2:179974/1‑140 (MQ=255)

                                                ccGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTaca                                                                                    >  2:161547/1‑140 (MQ=255)

                                                 cGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTacac                                                                                   >  1:1907364/1‑140 (MQ=255)

                                                 cGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTacac                                                                                   >  2:535632/1‑140 (MQ=255)

                                                 cGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTacac                                                                                   >  1:20159/1‑140 (MQ=255)

                                                 cGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTacac                                                                                   >  1:192382/1‑140 (MQ=255)

                                                  gTGACCTGAAAATCTGGTCGCTGGTAAGCACCCGGTTGGAGCGCGTGTCGATGCTGGACATGAAGGGCAGCACGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACAcc                                                                                  <  2:335717/140‑1 (MQ=255)

                                                  gTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGgctg                                                                                           >  2:142814/1‑131 (MQ=255)

                                                  gTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGgctg                                                                                           <  1:142814/131‑1 (MQ=255)

                                                  gTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACAcc                                                                                  >  1:307241/1‑140 (MQ=255)

                                                    gACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGTGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGgc                                                                                             <  2:1673138/127‑1 (MQ=255)

                                                    gACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGgc                                                                                             >  1:1181552/1‑127 (MQ=255)

                                                    gACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGgc                                                                                             <  2:1181552/127‑1 (MQ=255)

                                                    gACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGgc                                                                                             >  1:1673138/1‑127 (MQ=255)

                                                    gACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGa                                                                                >  1:853501/1‑140 (MQ=255)

                                                    gACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGa                                                                                <  2:1595566/140‑1 (MQ=255)

                                                                     gCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACt                                                               <  1:179974/140‑1 (MQ=255)

                                                                       tGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCg                                                             >  2:2005547/1‑140 (MQ=255)

                                                                              cACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGa                                                      >  2:718664/1‑140 (MQ=255)

                                                                                   cGTTGGACCGCGTGTCGATGTTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAAc                                                 >  1:1036240/1‑140 (MQ=255)

                                                                                   cGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAAc                                                 >  2:1520711/1‑140 (MQ=255)

                                                                                   cGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAAc                                                 >  1:2144605/1‑140 (MQ=255)

                                                                                   cGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAAc                                                 >  1:2098647/1‑140 (MQ=255)

                                                                                        gACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCg                                            >  2:440270/1‑140 (MQ=255)

                                                                                        gACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCg                                            <  2:93762/140‑1 (MQ=255)

                                                                                           cgcgTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCaa                                         >  1:1276270/1‑140 (MQ=255)

                                                                                            gcgTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAAc                                        <  2:168687/140‑1 (MQ=255)

                                                                                             cgTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACt                                       >  2:2150325/1‑140 (MQ=255)

                                                                                             cgTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACt                                       >  2:1152109/1‑140 (MQ=255)

                                                                                             cgTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACt                                       >  1:1501786/1‑140 (MQ=255)

                                                                                             cgTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACt                                       >  1:268139/1‑140 (MQ=255)

                                                                                             cgTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACt                                       >  2:1956820/1‑140 (MQ=255)

                                                                                              gtgtCGATGTTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACtt                                      <  2:1036240/140‑1 (MQ=255)

                                                                                               tgtCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTc                                     >  2:2064747/1‑140 (MQ=255)

                                                                                               tgtCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTc                                     >  1:1321324/1‑140 (MQ=255)

                                                                                                          gACATGAAGGGCAACCCAGACACCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGTCGGTAAATTCTGGCTGCTCTACACCGCCGTGAAGATTGTCGACCCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACcgc                          <  1:2092356/140‑1 (MQ=255)

                                                                                                           aCATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTACTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACcgcg                         <  2:853501/140‑1 (MQ=255)

                                                                                                            cATGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCgcgc                        <  2:1397364/140‑1 (MQ=255)

                                                                                                            aaTGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCgcgc                        <  2:268139/139‑1 (MQ=255)

                                                                                                             aTGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGcc                       <  1:161547/140‑1 (MQ=255)

                                                                                                             aTGAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGcc                       <  1:15166/140‑1 (MQ=255)

                                                                                                               gAAGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCACAACTTCCTCGTCACCGCGCCCt                     >  2:1161575/1‑140 (MQ=255)

                                                                                                                aaGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTc                    >  1:2147920/1‑140 (MQ=255)

                                                                                                                aaGGGCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTc                    <  1:1043560/140‑1 (MQ=255)

                                                                                                                    gCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATc                >  1:2013748/1‑140 (MQ=255)

                                                                                                                    gCAACCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATc                >  1:1075420/1‑140 (MQ=255)

                                                                                                                       aCCCGGCCTTCGGCGGAATCTGGGCGCCGTGCTTGATCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAg             <  2:582704/140‑1 (MQ=255)

                                                                                                                       aCCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACTCCGACGGGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCGCGTCACCGCGCCCTCCAGCGAg             <  2:260727/140‑1 (MQ=255)

                                                                                                                       aCCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAg             <  1:12261/140‑1 (MQ=255)

                                                                                                                       aCCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAg             >  2:988275/1‑140 (MQ=255)

                                                                                                                       aCCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAg             <  1:535632/140‑1 (MQ=255)

                                                                                                                       aCCCGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAg             <  2:1321324/140‑1 (MQ=255)

                                                                                                                       aCCCGGACTCAGTCGAAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCGGCTCTACACCGAGGTAAAGATTGTCGACTAGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAg             <  2:1061009/140‑1 (MQ=255)

                                                                                                                        cccGGACTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAgg            <  2:2103376/140‑1 (MQ=255)

                                                                                                                             aCTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCa       <  1:2005547/140‑1 (MQ=255)

                                                                                                                             aCTCCGGCGGAATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCa       <  2:1907364/140‑1 (MQ=255)

                                                                                                                                  ggcggaATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGgag  >  1:1463752/1‑140 (MQ=255)

                                                                                                                                  ggcggaATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGgag  <  1:1626215/140‑1 (MQ=255)

                                                                                                                                  ggcggaATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGgag  <  1:1311952/140‑1 (MQ=255)

                                                                                                                                  ggcggaATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGgag  <  2:192382/140‑1 (MQ=255)

                                                                                                                                  ggcggaATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGgag  <  1:735489/140‑1 (MQ=255)

                                                                                                                                  ggcggaATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGgag  >  2:1601221/1‑140 (MQ=255)

CGCCACCTCGACCTTCGAGTGGTTCCCGGGCGTGCGCATCTACCACTCCCGTGACCTGAAAAACTGGTCGCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGCATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAG  >  NC_000913/286866‑287135

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A