Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	524,757	G→T	L499L (CTG→CTT)	rhsD →	protein RhsD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	524,757	0	G	T	100.0%	340.9 / NA	99	L499L (CTG→CTT)	rhsD	protein RhsD
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (49/50); total (49/50)

Only 100 of 102 total aligned reads displayed.

TCCGGCGATATCACGGACATCACCACACCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTGGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGACCTGGAGCCGCTACGGGCAGTTGCTGG  >  NC_000913/524620‑524893

tCCGGCGATATCACGGACATCACCACACCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGt                                                                                                                                        <  2:940560/140‑1 (MQ=255)

   ggCGATATCACGGACATCACCACACCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGGTGGGTCCCCGTACGAGCTGGAGAGCCGCCGGGAACATGATGAACCGGGCAGGCTTGTATc                                                                                                                                     >  2:773963/1‑140 (MQ=255)

       atatCACGGACATCACCACACCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGgag                                                                                                                                 >  2:1413284/1‑140 (MQ=255)

       atatCACGGACATCACCACACCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGgag                                                                                                                                 >  2:215446/1‑140 (MQ=255)

              ggACATCACCACACCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATcgc                                                                                                                          >  2:1023351/1‑140 (MQ=255)

                aCATCACCACACCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCgcgc                                                                                                                        <  1:989950/140‑1 (MQ=255)

                aCATCACCACACCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCgcgc                                                                                                                        <  2:1005668/140‑1 (MQ=255)

                  aTCACCACACCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAg                                                                                                                      >  1:331133/1‑140 (MQ=255)

                  aTCACCACACCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAg                                                                                                                      >  2:411271/1‑140 (MQ=255)

                    caccacACCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCg                                                                                                                    >  2:1893767/1‑140 (MQ=255)

                    caccacACCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCg                                                                                                                    >  2:1572494/1‑140 (MQ=255)

                    caccacACCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCg                                                                                                                    >  2:1494352/1‑140 (MQ=255)

                    caccacACCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCg                                                                                                                    >  2:429688/1‑140 (MQ=255)

                     accacACCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCgg                                                                                                                   <  1:1413284/140‑1 (MQ=255)

                     accacACCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCgg                                                                                                                   <  2:667800/140‑1 (MQ=255)

                     accacACCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCgg                                                                                                                   <  2:1411393/140‑1 (MQ=255)

                      ccacACCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCggg                                                                                                                  <  2:511607/140‑1 (MQ=255)

                      ccacACCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCggg                                                                                                                  >  2:570279/1‑140 (MQ=255)

                        acacCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGga                                                                                                                <  2:601910/140‑1 (MQ=255)

                        acacCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGga                                                                                                                <  2:128791/140‑1 (MQ=255)

                        acacCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGga                                                                                                                <  2:430311/140‑1 (MQ=255)

                          acCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGgaga                                                                                                              <  2:1420450/140‑1 (MQ=255)

                          acCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGgaga                                                                                                              <  1:890738/140‑1 (MQ=255)

                          acCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGgaga                                                                                                              <  2:590682/140‑1 (MQ=255)

                            cGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACa                                                                                                            >  2:130455/1‑140 (MQ=255)

                            cGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACa                                                                                                            >  2:45157/1‑140 (MQ=255)

                            cGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACa                                                                                                            >  2:2008176/1‑140 (MQ=255)

                              gACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATc                                                                                                                            >  1:664720/1‑122 (MQ=255)

                              gACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATc                                                                                                                            <  2:664720/122‑1 (MQ=255)

                              gACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGgaga                                                                                                              <  1:796705/136‑1 (MQ=255)

                              gACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGgaga                                                                                                              >  2:796705/1‑136 (MQ=255)

                              gACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAg                                                                                                           <  1:942730/139‑1 (MQ=255)

                              gACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAg                                                                                                           >  2:942730/1‑139 (MQ=255)

                              gACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGt                                                                                                          >  2:1884428/1‑140 (MQ=255)

                              gACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGt                                                                                                          >  2:242021/1‑140 (MQ=255)

                              gACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGt                                                                                                          >  1:453672/1‑140 (MQ=255)

                               aCGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTa                                                                                                         >  1:1832025/1‑140 (MQ=255)

                                   gcgggAGAGGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACACCGCGCAGCGGGGAGACAGTAcgct                                                                                                     <  1:1204930/140‑1 (MQ=255)

                                   gcgggAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTAcgct                                                                                                     >  2:1392979/1‑140 (MQ=255)

                                   gcgggAGACGAAATTTTACTATAACGACAGCAACCAGCAGAAGGCGGTTTGGACCCTGGTCGGGCTGGAGAGCCGCCGGAAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTAagct                                                                                                     <  2:2026080/140‑1 (MQ=255)

                                    cgggAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGGGGAAGTAcgctt                                                                                                    >  2:1718/1‑139 (MQ=255)

                                    cgggAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTAcgcta                                                                                                    >  1:581573/1‑140 (MQ=255)

                                      ggAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTAcgctacc                                                                                                  >  1:1854145/1‑140 (MQ=255)

                                            gAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACg                                                                                            <  1:242021/140‑1 (MQ=255)

                                            gAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACg                                                                                            <  1:215446/140‑1 (MQ=255)

                                            gAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACg                                                                                            <  1:1893767/140‑1 (MQ=255)

                                                 tttACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGAc                                                                                       <  1:1973001/140‑1 (MQ=255)

                                                  ttACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGAcg                                                                                      <  1:1572494/140‑1 (MQ=255)

                                                   tgcTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGAcgc                                                                                     >  2:1938687/3‑140 (MQ=255)

                                                    aCTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGAcgcg                                                                                    <  1:1398157/140‑1 (MQ=255)

                                                    aCTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGAcgcg                                                                                    <  1:411271/140‑1 (MQ=255)

                                                       ataACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGcac                                                                                 <  2:1854145/140‑1 (MQ=255)

                                                         aaCGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCTGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGTTACGATGACGCGCACAg                                                                               <  1:2118513/140‑1 (MQ=255)

                                                         aaCGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAg                                                                               <  2:453672/140‑1 (MQ=255)

                                                          acgacgGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGt                                                                              >  2:615056/1‑140 (MQ=255)

                                                                  aaCCAGCTGACGGCGGTGGTGTCCCCGGCCGGGCTGGAGTGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGGGACCGTACGCTACCGCTACGATGACGCGCACCGTGAGTTAcc                                                                      >  2:885567/1‑140 (MQ=255)

                                                                   aCCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCTCACAGTGAGTTACCg                                                                     >  1:529394/1‑140 (MQ=255)

                                                                   aCCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGGGTTACCg                                                                     <  2:1832025/140‑1 (MQ=255)

                                                                      aGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGcg                                                                  <  2:331133/140‑1 (MQ=255)

                                                                       gCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGcga                                                                 >  2:1973780/1‑140 (MQ=255)

                                                                        cTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGcgac                                                                >  2:483553/1‑140 (MQ=255)

                                                                        cTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGcgac                                                                >  1:2068646/1‑140 (MQ=255)

                                                                        cTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGcgac                                                                <  1:429688/140‑1 (MQ=255)

                                                                        cTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGcgac                                                                <  1:1023351/140‑1 (MQ=255)

                                                                           aCGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCgacgac                                                             <  1:1674847/140‑1 (MQ=255)

                                                                           aCGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCgacgac                                                             >  2:182072/1‑140 (MQ=255)

                                                                             ggcggTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACaa                                                           <  1:885567/140‑1 (MQ=255)

                                                                                     tgtCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCg                                                   >  2:1548580/1‑140 (MQ=255)

                                                                                     tgtCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCg                                                   <  1:1718/140‑1 (MQ=255)

                                                                                          ccGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACggg                                              <  2:581573/140‑1 (MQ=255)

                                                                                          ccGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACggg                                              <  1:570279/140‑1 (MQ=255)

                                                                                                 ggCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCAcc                                       >  1:1939003/1‑140 (MQ=255)

                                                                                                      gagaGCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCa                                  <  1:1548580/140‑1 (MQ=255)

                                                                                                        gagCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCGCCCGGCAGa                                <  1:773963/140‑1 (MQ=255)

                                                                                                        gagCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGa                                <  1:2008176/140‑1 (MQ=255)

                                                                                                        gagCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGa                                <  1:130455/140‑1 (MQ=255)

                                                                                                        gagCCGCCGGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGa                                <  1:45157/140‑1 (MQ=255)

                                                                                                           ccgccgGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGa                             >  2:339142/1‑140 (MQ=255)

                                                                                                            cgccgGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGAc                            >  2:1258616/1‑140 (MQ=255)

                                                                                                            cgccgGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGAc                            <  1:1936412/140‑1 (MQ=255)

                                                                                                            cgccgGGAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGAc                            >  2:1471732/1‑140 (MQ=255)

                                                                                                                gggAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGACCTgg                        <  1:1884428/140‑1 (MQ=255)

                                                                                                                  gAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGACCTGGAg                      <  1:1471732/140‑1 (MQ=255)

                                                                                                                  gAATATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGACCTGGAg                      <  1:182072/140‑1 (MQ=255)

                                                                                                                   aaTATGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGACCTGGAGc                     <  1:990442/140‑1 (MQ=255)

                                                                                                                     tatGATGAACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGACCTGGAGCCg                   >  1:1777658/1‑140 (MQ=255)

                                                                                                                         atgaACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGACCTGGAGCCGCTAc               <  2:2068646/140‑1 (MQ=255)

                                                                                                                           gaACCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGACCTGGAGCCGCTACgg             <  1:615056/140‑1 (MQ=255)

                                                                                                                            aaCCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGACCTGGAGCCGCTACggg            >  2:1361850/1‑140 (MQ=255)

                                                                                                                             aCCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGACCTGGAGCCGCTACGGGc           >  2:1236570/1‑140 (MQ=255)

                                                                                                                             aCCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGACCTGGAGCCGCTACGGGc           >  2:1507469/1‑140 (MQ=255)

                                                                                                                             aCCGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGACCTGGAGCCGCTACGGGc           >  1:1619424/1‑140 (MQ=255)

                                                                                                                               cGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGACCTGGAGCCGCTACGGGCAg         >  1:1367217/1‑140 (MQ=255)

                                                                                                                               cGGGCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGACCTGGAGCCGCTACGGGCAg         >  1:1062271/1‑140 (MQ=255)

                                                                                                                                gggCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGACCTGGAGCCGCTACGGGCAGt        >  2:739880/1‑140 (MQ=255)

                                                                                                                                gggCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGACCTGGAGCCGCTACGGGCAGt        >  1:1578512/1‑140 (MQ=255)

                                                                                                                                  gCAGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGACCTGGAGCCGCTACGGGCAGTTg      >  2:1056681/1‑140 (MQ=255)

                                                                                                                                    aGGCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGACCTGGAGCCGCTACGGGCAGTTGCt    >  1:178564/1‑140 (MQ=255)

                                                                                                                                      gCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGTACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGACCTGGAGCCGCTACGGGCAGTTGCTgg  <  2:1619424/140‑1 (MQ=255)

                                                                                                                                      gCTTGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGACCTGGAGCCGCTACGGGCAGTTGCTgg  <  1:1065697/140‑1 (MQ=255)

TCCGGCGATATCACGGACATCACCACACCGGACGGGCGGGAGACGAAATTTTACTATAACGACGGGAACCAGCTGACGGCGGTGGTGTCCCCGGACGGGCTGGAGAGCCGCCGGGAATATGATGAACCGGGCAGGCTGGTATCGGAGACATCGCGCAGCGGGGAGACAGTACGCTACCGCTACGATGACGCGCACAGTGAGTTACCGGCGACGACAACGGATGCGACGGGCAGCACCCGGCAGATGACCTGGAGCCGCTACGGGCAGTTGCTGG  >  NC_000913/524620‑524893

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A