Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 832,481 G→T A157D (GCT→GAT)  ybiA ← N‑glycosidase YbiA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913832,4810GT100.0% 333.4 / NA 96A157D (GCT→GAT) ybiAN‑glycosidase YbiA
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (42/54);  total (42/54)

Only 100 of 102 total aligned reads displayed.

TTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCGGTTGCCAGCAAGAGCGCACG  >  NC_000913/832349‑832617
                                                                                                                                    |                                                                                                                                        
attcgTAGGACGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTg                                                                                                                                   >  2:1459160/5‑140 (MQ=255)
 tttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGt                                                                                                                                  <  2:873008/140‑1 (MQ=255)
  ttGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGtt                                                                                                                                 <  1:178216/140‑1 (MQ=255)
  ttGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGtt                                                                                                                                 >  2:1985709/1‑140 (MQ=255)
     tAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTcgc                                                                                                                              >  2:1353121/1‑140 (MQ=255)
      aGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTcgcg                                                                                                                             <  2:929516/140‑1 (MQ=255)
         ccGGATAAGGCGTTTACGCCGCATGCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCaa                                                                                                                          <  2:89826/140‑1 (MQ=255)
         ccGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCaa                                                                                                                          <  1:874909/140‑1 (MQ=255)
         ccGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCaa                                                                                                                          <  2:473419/140‑1 (MQ=255)
          cGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAAc                                                                                                                         <  1:1164197/140‑1 (MQ=255)
          cGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAAc                                                                                                                         >  1:1230833/1‑140 (MQ=255)
          cGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAAc                                                                                                                         >  1:1655295/1‑140 (MQ=255)
          cGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAAc                                                                                                                         <  1:1599919/140‑1 (MQ=255)
            gATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCGCTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTc                                                                                                                       <  2:1623873/140‑1 (MQ=255)
            gATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTc                                                                                                                       <  2:636136/140‑1 (MQ=255)
            gATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTc                                                                                                                       >  1:2011536/1‑140 (MQ=255)
            gATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTc                                                                                                                       >  1:50067/1‑140 (MQ=255)
            gATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTc                                                                                                                       >  2:129337/1‑140 (MQ=255)
            gATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTAACTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTc                                                                                                                       >  1:1524336/1‑140 (MQ=255)
             aTAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTcc                                                                                                                      >  1:1779822/1‑140 (MQ=255)
                aGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCAtt                                                                                                                   <  1:891409/140‑1 (MQ=255)
                 ggCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTa                                                                                                                  <  1:1459160/140‑1 (MQ=255)
                   cGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCaa                                                                                                                          <  2:961181/130‑1 (MQ=255)
                   cGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCaa                                                                                                                          >  1:961181/1‑130 (MQ=255)
                   cGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTaaa                                                                                                                >  2:1842639/1‑140 (MQ=255)
                      ttACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAgg                                                                                                             >  2:1485581/1‑140 (MQ=255)
                      ttACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAgg                                                                                                             <  1:1353121/140‑1 (MQ=255)
                      ttACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAgg                                                                                                             >  1:1456502/1‑140 (MQ=255)
                       tACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATATGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGt                                                                                                            >  1:991276/1‑140 (MQ=255)
                       tACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGt                                                                                                            >  2:830224/1‑140 (MQ=255)
                       tACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGt                                                                                                            >  1:1110100/1‑140 (MQ=255)
                       tACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGt                                                                                                            >  1:655239/1‑140 (MQ=255)
                       tACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGt                                                                                                            >  1:590998/1‑140 (MQ=255)
                          gccgcATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCACCTCCATTAAAAGGTAGc                                                                                                         <  1:2112566/140‑1 (MQ=255)
                           ccgcATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGcc                                                                                                        <  1:1842639/140‑1 (MQ=255)
                             gcATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCa                                                                                                      <  1:996987/140‑1 (MQ=255)
                                tCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTc                                                                                                   <  1:1321660/140‑1 (MQ=255)
                                     cATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTc                                                                                              <  2:1805503/140‑1 (MQ=255)
                                     aaTTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTc                                                                                              <  2:655239/139‑1 (MQ=255)
                                      aTTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCt                                                                                             <  2:822519/140‑1 (MQ=255)
                                          cacaACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGcc                                                                                         <  2:1879981/140‑1 (MQ=255)
                                           acaacaAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATATGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGccc                                                                                        <  2:991276/140‑1 (MQ=255)
                                           acaacaAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGccc                                                                                        <  1:830224/140‑1 (MQ=255)
                                           acaacaAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGccc                                                                                        <  1:129337/140‑1 (MQ=255)
                                           acaacaAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGccc                                                                                        <  2:1026363/140‑1 (MQ=255)
                                                  gCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCAt                                                                                 >  2:1399113/1‑140 (MQ=255)
                                                  gCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCAt                                                                                 >  2:1023045/1‑140 (MQ=255)
                                                    aCTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGa                                                                               >  1:1300128/1‑140 (MQ=255)
                                                      ttGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGacc                                                                             <  1:1762108/140‑1 (MQ=255)
                                                        gTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGaccac                                                                           <  2:2065250/140‑1 (MQ=255)
                                                         tCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGaccacc                                                                          >  1:230140/1‑140 (MQ=255)
                                                         tCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGaccacc                                                                          >  1:1698126/1‑140 (MQ=255)
                                                          aaGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCg                                                                         <  2:580253/139‑1 (MQ=255)
                                                           aGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGt                                                                        <  2:830871/140‑1 (MQ=255)
                                                           aGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGt                                                                        >  1:1325498/1‑140 (MQ=255)
                                                           aGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGt                                                                        <  2:50067/140‑1 (MQ=255)
                                                           aGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGt                                                                        <  1:1002048/140‑1 (MQ=255)
                                                            gCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGtc                                                                       <  2:590998/140‑1 (MQ=255)
                                                            gCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGtc                                                                       <  1:1251354/140‑1 (MQ=255)
                                                             cAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGtct                                                                      >  2:1534590/1‑140 (MQ=255)
                                                                tttGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTccc                                                                   >  1:995077/1‑140 (MQ=255)
                                                                tttGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTccc                                                                   <  2:1391772/140‑1 (MQ=255)
                                                                  tGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCa                                                                 <  1:1023045/140‑1 (MQ=255)
                                                                  tGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCa                                                                 >  1:1866324/1‑140 (MQ=255)
                                                                    agaACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGt                                                               <  2:1655295/140‑1 (MQ=255)
                                                                    agaACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGt                                                               <  2:1779822/140‑1 (MQ=255)
                                                                        aacGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGc                                                           <  2:1230833/139‑1 (MQ=255)
                                                                         acGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCa                                                          <  2:2011536/140‑1 (MQ=255)
                                                                           gggAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTGCCATGACCACCGTCTCCCCAGTAAGCAtt                                                        >  2:1695015/1‑139 (MQ=255)
                                                                              aaaaaaTTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGtt                                                     >  1:1821142/1‑140 (MQ=255)
                                                                                     ttATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTa                                              <  2:1110100/140‑1 (MQ=255)
                                                                                       aTCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATg                                            <  2:230918/140‑1 (MQ=255)
                                                                                        tCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGc                                           <  2:1524336/140‑1 (MQ=255)
                                                                                            ttttACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCaa                                       >  2:1578707/1‑140 (MQ=255)
                                                                                            ttttACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCAACGTTTTCCGTATGCTCaa                                       <  1:1399113/140‑1 (MQ=255)
                                                                                              ttACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAAcc                                     <  2:230140/140‑1 (MQ=255)
                                                                                                      cATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGc                             >  1:1882278/1‑140 (MQ=255)
                                                                                                        aaaGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCgg                           <  2:1843277/139‑1 (MQ=255)
                                                                                                           accACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGgcg                        <  2:1882278/139‑1 (MQ=255)
                                                                                                              aCCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCgg                     <  2:1821142/140‑1 (MQ=255)
                                                                                                               ccGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCGGt                    >  1:2002456/1‑140 (MQ=255)
                                                                                                               ccGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTAACATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCGGt                    >  1:222955/1‑140 (MQ=255)
                                                                                                                cGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCgg                     <  2:915778/138‑1 (MQ=255)
                                                                                                                cGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCgg                     >  1:915778/1‑138 (MQ=255)
                                                                                                                cGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCGGtt                   <  1:1044299/140‑1 (MQ=255)
                                                                                                                cGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCGGtt                   >  2:1079872/1‑140 (MQ=255)
                                                                                                                    aCGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCGGTTGCCa               >  2:125283/1‑140 (MQ=255)
                                                                                                                       ttACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCGGTTGCCAGCa            <  2:1325498/140‑1 (MQ=255)
                                                                                                                         aCTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCGGTTGCCAGCAag          >  1:2105018/1‑140 (MQ=255)
                                                                                                                          cTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCGGTTGCCAGCAaga         <  2:1300128/140‑1 (MQ=255)
                                                                                                                            tctcTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCGGTTGCCAGCAAGAgc       <  1:1578707/140‑1 (MQ=255)
                                                                                                                             ctctATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCGGTTGCCAGCAAGAgcg      >  2:1280543/1‑140 (MQ=255)
                                                                                                                               ctATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCGGTTGCCAGCAAGAGcgca    >  1:734599/1‑140 (MQ=255)
                                                                                                                               ctATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCGGTTGCCAGCAAGAGcgca    <  2:1834575/140‑1 (MQ=255)
                                                                                                                               ctATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCGGTTGCCAGCAAGAGcgca    >  1:1769443/1‑140 (MQ=255)
                                                                                                                                tataTCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCGGTTGCCAGCAAGAGcgcac   >  1:1990710/1‑140 (MQ=255)
                                                                                                                                 atatCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCGGTTGCCAGCAAGAGcgcacg  <  2:702029/140‑1 (MQ=255)
                                                                                                                                 atatCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCGGTTGCCAGCAAGAGcgcacg  <  2:802370/140‑1 (MQ=255)
                                                                                                                                 atatCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCGGTTGCCAGCAAGAGcgcacg  <  1:1914979/140‑1 (MQ=255)
                                                                                                                                 atatCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTCGCGGGCGCGGTTGCCAGCAAGAGcgcacg  <  2:1866324/140‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                        
TTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCGGTTGCCAGCAAGAGCGCACG  >  NC_000913/832349‑832617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A