Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F48 I1 R1	76	74.1	2532288	99.0%	2506965	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	194,803	G→T	intergenic (+86/‑100)	dxr → / → ispU	1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase/undecaprenyl diphosphate synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	194,803	0	G	T	100.0%	234.1 / NA	67	intergenic (+86/‑100)	dxr/ispU	1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase/undecaprenyl diphosphate synthase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (40/27); total (40/27)

GAACGCGCGTGAAGTCGCCAGAAAAGAGGTGATGCGTCTCGCAAGCTGAGGATAATCCGGCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGGCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTCTGCTACTCAACCACTTAGCGAAAAA  >  NC_000913/194669‑194938

gAACGCGCGTGAAGTCGCCAGAAAAGAGGTGATGCGTCTCGCAAGCTGAGGATAATCCGGCTACATAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTta                                                                                                                                    <  1:642424/140‑1 (MQ=255)

gAACGCGCGTGAAGTCGCCAGAAAAGAGGTGATGCGTCTCGCAAGCTGAGGATAATCCGGCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTta                                                                                                                                    <  1:855193/140‑1 (MQ=255)

 aaCGCGCGTGAAGTCGCCAGAAAAGAGGTGATGCGTCTCGCAAGCTGAGGATAATCCGGCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTtat                                                                                                                                   >  1:243226/1‑140 (MQ=255)

 aaCGCGCGTGAAGTCGCCAGAAAAGAGGTGATGCGTCTCGCAAGCTGAGGATAATCCGGCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTtat                                                                                                                                   <  1:766560/140‑1 (MQ=255)

 aaCGCGCGTGAAGTCGCCAGAAAAGAGGTGATGCGTCTCGCAAGCTGAGGATAATCCGGCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTtat                                                                                                                                   >  1:338025/1‑140 (MQ=255)

    gcgcgTGAAGTCGCCAGAAAAGAGGTGATGCGTCTCGCAAGCTGAGGATAATCCGGCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAg                                                                                                                                <  2:725836/140‑1 (MQ=255)

     cgcgTGAAGTCGCCAGAAAAGAGGTGATGCGTCTCGCAAGCTGAGGATAATCCGGCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAgg                                                                                                                               <  2:638936/140‑1 (MQ=255)

      gcgTGAAGTCGCCAGAAAAGAGGTGATGCGTCTCGCAAGCTGAGGATAATCCGGCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGt                                                                                                                              <  1:1258220/140‑1 (MQ=255)

                gCCAGAAAAGAGGTGATGCGTCTCGCAAGCTGAGGATAATCCGGCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGcc                                                                                                                    >  2:365690/1‑140 (MQ=255)

                gCCAGAAAAGAGGTGATGCGTCTCGCAAGCTGAGGATAATCCGGCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGcc                                                                                                                    >  1:344286/1‑140 (MQ=255)

                 ccAGAAAAGAGGTGATGCGTCTCGCAAGCTGAGGATAATCCGGCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCg                                                                                                                   <  1:131775/140‑1 (MQ=255)

                          agGTGATGCGTCTCGCAAGCTGAGGATAATCCGGCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTac                                                                                                          >  1:244103/1‑140 (MQ=255)

                               aTGCGTCTCGCAAGCTGAGGATAATCCGGCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACgga                                                                                                     >  2:17946/1‑139 (MQ=255)

                                    tctcGCAAGCTGAGGATAATCCGGCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCttttt                                                                                                <  1:365690/140‑1 (MQ=255)

                                       cGCAAGCTGAGGATAATCCGGCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCtttttttt                                                                                             <  2:44966/140‑1 (MQ=255)

                                         cAAGCTGAGGATAATCCGGCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGt                                                                                           >  1:313701/1‑140 (MQ=255)

                                          aaGCTGAGGATAATCCGGCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGta                                                                                          <  2:1257614/140‑1 (MQ=255)

                                              tGAGGATAATCCGGCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAgg                                                                                      <  2:588299/140‑1 (MQ=255)

                                               gAGGATAATCCGGCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGc                                                                                     <  2:942044/140‑1 (MQ=255)

                                               gAGGATAATCCGGCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGc                                                                                     <  2:242064/140‑1 (MQ=255)

                                                 ggATAATCCGGCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCtt                                                                                   <  2:338025/140‑1 (MQ=255)

                                                  gATAATCCGGCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTc                                                                                  >  2:759397/1‑140 (MQ=255)

                                                          ggCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTcc                                                                          >  1:973189/1‑140 (MQ=255)

                                                           gCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCt                                                                         <  1:579080/140‑1 (MQ=255)

                                                           gCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCt                                                                         <  1:258555/140‑1 (MQ=255)

                                                              aCAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAg                                                                      <  2:449450/140‑1 (MQ=255)

                                                               cAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGt                                                                     <  1:506642/140‑1 (MQ=255)

                                                               cAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGt                                                                     <  1:859211/140‑1 (MQ=255)

                                                               aagagagTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGt                                                                     <  2:344286/139‑1 (MQ=255)

                                                                      tCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTaa                                                              >  1:910505/1‑140 (MQ=255)

                                                                      tCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTaa                                                              >  2:1156481/1‑140 (MQ=255)

                                                                         cgcTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAAcc                                                           >  1:738893/1‑140 (MQ=255)

                                                                         cgcTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAAcc                                                           >  1:936368/1‑140 (MQ=255)

                                                                         cgcTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAAcc                                                           >  2:119935/1‑140 (MQ=255)

                                                                           cTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCt                                                         >  2:201969/1‑140 (MQ=255)

                                                                                      cGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATa                                              >  2:338796/1‑140 (MQ=255)

                                                                                          gggCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATaaaaa                                          >  1:535205/1‑140 (MQ=255)

                                                                                          gggCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATaaaaa                                          >  2:469811/1‑140 (MQ=255)

                                                                                             cTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAAcg                                       >  2:260159/1‑140 (MQ=255)

                                                                                                    gATATAGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGAtg                                <  1:1117064/140‑1 (MQ=255)

                                                                                                      tataGTCTGCGCCATCTGATCGTAAGTAGTTATCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGAtgtt                              >  1:906783/1‑140 (MQ=255)

                                                                                                         aGTCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTc                           <  2:243226/140‑1 (MQ=255)

                                                                                                           tCTGCGCCATCTGGTCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTCTg                         >  2:922144/1‑140 (MQ=255)

                                                                                                           tCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTCTg                         >  2:349298/1‑140 (MQ=255)

                                                                                                           tCTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTCTg                         >  1:390058/1‑140 (MQ=255)

                                                                                                            cTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTCTGc                        >  1:1160240/1‑140 (MQ=255)

                                                                                                            cTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTCTGc                        <  1:260159/140‑1 (MQ=255)

                                                                                                            cTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTCTGc                        <  1:338796/140‑1 (MQ=255)

                                                                                                            cTGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTCTGc                        <  1:469811/140‑1 (MQ=255)

                                                                                                             tGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTCTGCt                       >  2:982172/1‑140 (MQ=255)

                                                                                                             tGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTCTGCt                       >  2:791781/1‑140 (MQ=255)

                                                                                                             tGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTCTGCt                       >  1:335551/1‑140 (MQ=255)

                                                                                                             tGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTCTGCt                       >  1:47881/1‑140 (MQ=255)

                                                                                                             tGCGCCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTCTGCt                       >  2:641717/1‑140 (MQ=255)

                                                                                                               cgcCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTCTGCTAc                     >  2:623225/1‑140 (MQ=255)

                                                                                                               cgcCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTCTGCTAc                     >  1:307690/1‑140 (MQ=255)

                                                                                                               cgcCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTCTGCTAc                     >  2:260649/1‑140 (MQ=255)

                                                                                                               cgcCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTCTGCTAc                     >  1:73743/1‑140 (MQ=255)

                                                                                                               cgcCATCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATACGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTCTGCTAc                     >  1:911149/1‑140 (MQ=255)

                                                                                                                    tCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGAt                                 >  1:473826/1‑123 (MQ=255)

                                                                                                                    tCTGATCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGAt                                 <  2:473826/123‑1 (MQ=255)

                                                                                                                    tCTGATCGGAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTCTGCTACTCAAc                >  2:435893/1‑140 (MQ=255)

                                                                                                                        aTCGTAAGTAGTTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTCTGCTACTCAACCACt            <  2:801381/140‑1 (MQ=255)

                                                                                                                              agtagtTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTCTGCTACTCAACCACTTAGCGa      >  1:874990/1‑140 (MQ=255)

                                                                                                                                  gtTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGTATAAAAAACGCGTGATGTTGTCTGCTACTCAACCACTTAGCGaaaaa  >  2:24592/1‑140 (MQ=255)

                                                                                                                                  gtTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTCTGCTACTCAACCACTTAGCGaaaaa  >  2:885221/1‑140 (MQ=255)

                                                                                                                                  gtTGTCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGATTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTCTGCTACTCAACCACTTAGCGaaaaa  >  1:581317/1‑140 (MQ=255)

GAACGCGCGTGAAGTCGCCAGAAAAGAGGTGATGCGTCTCGCAAGCTGAGGATAATCCGGCTACAGAGAGTCGCGCTATTTGTTAGCGTAGGGCTTCAGTGATATAGTCTGCGCCATCTGATCGTAAGTAGTTGGCTTTATAAGGTCAGATATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGTACCGTAAACCCTGTCAGGGAATAAAAAACGCGTGATGTTGTCTGCTACTCAACCACTTAGCGAAAAA  >  NC_000913/194669‑194938

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A