Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F48 I1 R1	76	74.1	2532288	99.0%	2506965	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	578,922	C→A	intergenic (‑29/+262)	borD ← / ← ybcV	DLP12 prophage; prophage lipoprotein BorD/DLP12 prophage; protein YbcV

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	578,922	0	C	A	100.0%	313.2 / NA	86	intergenic (‑29/+262)	borD/ybcV	DLP12 prophage; prophage lipoprotein BorD/DLP12 prophage; protein YbcV
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (41/45); total (41/45)

TGGTTTCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGA  >  NC_000913/578785‑579058

tgttttCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATATGCAGGGCCAGCGTAGTAGCGACTAGCATTTTTTTAATGGTGTTATTACCGATGCTTTTTGAAGTTAGc                                                                                                                                        <  2:187071/137‑1 (MQ=255)

 ggTTTCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCa                                                                                                                                       <  2:749709/140‑1 (MQ=255)

 ggTTTCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCa                                                                                                                                       <  1:437841/140‑1 (MQ=255)

   tttCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGa                                                                                                                                     <  1:581171/140‑1 (MQ=255)

   tttCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGa                                                                                                                                     <  1:520580/140‑1 (MQ=255)

   tttCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGa                                                                                                                                     <  2:62212/140‑1 (MQ=255)

     tCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAAt                                                                                                                                   <  1:336040/140‑1 (MQ=255)

      ccTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATc                                                                                                                                  >  1:397036/1‑140 (MQ=255)

       cTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCg                                                                                                                                 >  1:639439/1‑140 (MQ=255)

        tttGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGt                                                                                                                                <  2:620214/140‑1 (MQ=255)

        tttGGTACTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGt                                                                                                                                <  1:491083/140‑1 (MQ=255)

          tGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTAt                                                                                                                              <  1:920374/140‑1 (MQ=255)

          tGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTAt                                                                                                                              >  1:1251204/1‑140 (MQ=255)

           ggTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTAtg                                                                                                                             >  1:1248462/1‑140 (MQ=255)

               gtACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTa                                                                                                                         <  1:333567/139‑1 (MQ=255)

               gtACTGCTGTCTGCTTGTATTGAACAGTAAATGTCGGTTGAGCACATCCTGTAATAAGCAGGGCCGGCGCAGTAGCGAGTGGCATTTTTTTCATGGAGTTATTCCCGATGCTTTTTGAAGATAACAGAATCGTATGTGTa                                                                                                                         <  2:862448/139‑1 (MQ=255)

               cTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTa                                                                                                                         <  1:671431/140‑1 (MQ=255)

                tACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAg                                                                                                                        <  1:954901/140‑1 (MQ=255)

                  ctgctgTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGaa                                                                                                                      >  2:478994/1‑140 (MQ=255)

                     ctgtctgtTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAAt                                                                                                                   <  1:556813/140‑1 (MQ=255)

                      tgtctgtTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAAtt                                                                                                                  >  2:268782/1‑140 (MQ=255)

                         ctgtTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTaaa                                                                                                               >  2:132127/1‑140 (MQ=255)

                          tgtttgttTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTaaac                                                                                                              <  2:502040/140‑1 (MQ=255)

                          tgtttgttTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTATTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAACTaaac                                                                                                              <  2:822143/140‑1 (MQ=255)

                            tttgtttTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTaaacaa                                                                                                            >  1:414925/1‑140 (MQ=255)

                            tttgtttTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTaaaca                                                                                                             >  1:512233/1‑139 (MQ=255)

                            tttgtttTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTaaaca                                                                                                             <  2:512233/139‑1 (MQ=255)

                             ttgtttTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTaaacaaa                                                                                                           <  2:639439/140‑1 (MQ=255)

                               gtttTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTaaac                                                                                                              <  2:570693/135‑1 (MQ=255)

                               gtttTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTaaac                                                                                                              >  1:570693/1‑135 (MQ=255)

                                    gAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTaaa                                                                                                    >  2:416275/1‑140 (MQ=255)

                                      aCAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACa                                                                                                  >  1:455607/1‑140 (MQ=255)

                                          tAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGa                                                                                              >  1:1072486/1‑140 (MQ=255)

                                              tGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTg                                                                                          <  2:1240084/140‑1 (MQ=255)

                                                    ttGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAAttt                                                                                    >  2:672078/1‑140 (MQ=255)

                                                    ttGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAAttt                                                                                    >  1:974382/1‑140 (MQ=255)

                                                    ttGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAAttt                                                                                    >  2:524879/1‑140 (MQ=255)

                                                    ttGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAAttt                                                                                    >  1:1053099/1‑140 (MQ=255)

                                                    ttGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAAttt                                                                                    >  1:799483/1‑140 (MQ=255)

                                                        gCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCata                                                                                <  1:132127/140‑1 (MQ=255)

                                                         cacaTCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCatat                                                                               >  1:203611/1‑140 (MQ=255)

                                                            aTCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGt                                                                            <  1:799374/140‑1 (MQ=255)

                                                              ccTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTa                                                                          >  2:939850/1‑140 (MQ=255)

                                                              ccTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTa                                                                          >  1:72351/1‑140 (MQ=255)

                                                                tGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAat                                                                        <  1:329048/140‑1 (MQ=255)

                                                                 gTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAata                                                                       <  2:105717/140‑1 (MQ=255)

                                                                      aaGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAAtatttat                                                                  <  1:524879/140‑1 (MQ=255)

                                                                      aaGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAAtatttat                                                                  <  1:688261/140‑1 (MQ=255)

                                                                      aaGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAAtatttat                                                                  <  2:414925/140‑1 (MQ=255)

                                                                      aaGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAAtatttat                                                                  >  1:451339/1‑140 (MQ=255)

                                                                      aaGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAAtatttat                                                                  <  1:478994/140‑1 (MQ=255)

                                                                      aaGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAAtatttat                                                                  <  2:1251204/140‑1 (MQ=255)

                                                                      aaGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAAtatttat                                                                  <  1:974920/140‑1 (MQ=255)

                                                                      aaGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAAtatttat                                                                  <  2:1046312/140‑1 (MQ=255)

                                                                        gCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATttatta                                                                >  2:400190/1‑140 (MQ=255)

                                                                           gggCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATg                                                             <  1:149091/140‑1 (MQ=255)

                                                                            ggCCAGCGCAGTAGTGAGTAGCATTTTTTTTTCGTTGTTATTCCCGATGCTTTTTGAAGGTACCCGAATCGAATGTGTAGAATATTTAACAAACCCTAAACAATGAGTTGAAATTTGATATGGTTAATATTTATTAATGt                                                            >  2:110429/1‑140 (MQ=255)

                                                                            ggCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGt                                                            >  2:1126815/1‑140 (MQ=255)

                                                                            ggCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGt                                                            >  1:658681/1‑140 (MQ=255)

                                                                            ggCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGt                                                            >  1:1151487/1‑140 (MQ=255)

                                                                            ggCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGt                                                            >  2:617149/1‑140 (MQ=255)

                                                                            ggCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGt                                                            >  1:44455/1‑140 (MQ=255)

                                                                            ggCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGt                                                            >  2:1001352/1‑140 (MQ=255)

                                                                            ggCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGt                                                            >  2:1063631/1‑140 (MQ=255)

                                                                              ccAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTAt                                                          >  2:727735/1‑140 (MQ=255)

                                                                                 gcgcAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGcc                                                       <  1:1063631/140‑1 (MQ=255)

                                                                                       tAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGc                                                 >  1:155827/1‑140 (MQ=255)

                                                                                             gTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGaa                                           <  2:44455/140‑1 (MQ=255)

                                                                                              tAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAAt                                          <  2:155827/140‑1 (MQ=255)

                                                                                               aGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATc                                         >  1:448148/1‑140 (MQ=255)

                                                                                               aGCATTTTTTTCATGGTGTTAATCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATc                                         >  2:1168487/1‑140 (MQ=255)

                                                                                                gCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCg                                        >  1:476430/1‑140 (MQ=255)

                                                                                                gCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCg                                        <  1:988997/140‑1 (MQ=255)

                                                                                                          cATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTAtt                              <  1:521838/140‑1 (MQ=255)

                                                                                                          cATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTAtt                              <  2:761537/140‑1 (MQ=255)

                                                                                                          cATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTAtt                              <  2:455607/140‑1 (MQ=255)

                                                                                                          cATGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTAtt                              <  1:400190/140‑1 (MQ=255)

                                                                                                            tGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTcc                            <  1:1001352/140‑1 (MQ=255)

                                                                                                            tGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTcc                            <  2:1248462/140‑1 (MQ=255)

                                                                                                            tGGTGTTATTCCCGATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAAACGTCATTGTATTcc                            <  2:682267/140‑1 (MQ=255)

                                                                                                                         gATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCTCGGATTAACTATg               >  2:818026/1‑140 (MQ=255)

                                                                                                                         gATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTAtt               >  2:688921/1‑139 (MQ=255)

                                                                                                                         gATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTAtt               >  2:455796/1‑139 (MQ=255)

                                                                                                                         gATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATg               >  2:1197816/1‑140 (MQ=255)

                                                                                                                         gATGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATg               >  1:902449/1‑140 (MQ=255)

                                                                                                                           tGCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTc             >  1:184348/1‑140 (MQ=255)

                                                                                                                            gCTTTTTGAAGTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTcc            <  1:1126815/140‑1 (MQ=255)

                                                                                                                                      gTTAGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGa  <  1:672078/140‑1 (MQ=255)

TGGTTTCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGA  >  NC_000913/578785‑579058

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A