Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F48 I1 R1	76	74.1	2532288	99.0%	2506965	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	720,535	C→A	intergenic (‑75/‑48)	speF ← / → ybfK	ornithine decarboxylase, degradative/uncharacterized protein YbfK

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	720,535	0	C	A	100.0%	366.0 / NA	102	intergenic (‑75/‑48)	speF/ybfK	ornithine decarboxylase, degradative/uncharacterized protein YbfK
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (46/56); total (46/56)

Only 100 of 111 total aligned reads displayed.

TCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCATATGCC  >  NC_000913/720399‑720663

tctcGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGaaaa                                                                                                                               >  1:522731/1‑140 (MQ=255)

tctcGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGaaaa                                                                                                                               >  1:651555/1‑140 (MQ=255)

tctcGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGaaaa                                                                                                                               >  2:32404/1‑140 (MQ=255)

 ctcGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAaaaagaaaag                                                                                                                              >  1:1245446/1‑140 (MQ=255)

 ctcGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAaaaagaaaag                                                                                                                              >  1:888019/1‑140 (MQ=255)

  tcGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAATTCGATCGTGCCGGAAAAAAGAAAAGt                                                                                                                             >  2:1208815/1‑140 (MQ=255)

       gagTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTAccc                                                                                                                        <  1:1032567/138‑1 (MQ=255)

       gCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTAccc                                                                                                                        >  1:575256/1‑140 (MQ=255)

         gTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCg                                                                                                                      <  2:934953/140‑1 (MQ=255)

         gTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCg                                                                                                                      <  1:361669/140‑1 (MQ=255)

          tGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCgt                                                                                                                     >  1:328124/1‑139 (MQ=255)

            gTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTg                                                                                                                   <  1:1073507/140‑1 (MQ=255)

                aaCAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGataa                                                                                                               <  1:952202/140‑1 (MQ=255)

                  cAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGataaat                                                                                                             >  1:424464/1‑140 (MQ=255)

                    gTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGataaataa                                                                                                           <  2:643958/140‑1 (MQ=255)

                    gTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGataaataa                                                                                                           >  1:1098910/1‑140 (MQ=255)

                    gTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGataaataa                                                                                                           >  1:162798/1‑140 (MQ=255)

                     tCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGAtaaataaa                                                                                                          >  1:243947/1‑140 (MQ=255)

                     tCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGAtaaataaa                                                                                                          >  1:1243/1‑140 (MQ=255)

                     tCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGAtaaataaa                                                                                                          >  1:619654/1‑140 (MQ=255)

                     tCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGAtaaataaa                                                                                                          >  2:273141/1‑140 (MQ=255)

                      ccGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATCTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATaaataaat                                                                                                         >  1:47798/1‑140 (MQ=255)

                       cGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATc                                                                                                        >  1:445614/1‑140 (MQ=255)

                       cGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATc                                                                                                        >  1:1072624/1‑140 (MQ=255)

                         ggCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAg                                                                                                      <  2:1186420/140‑1 (MQ=255)

                                   aCTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCt                                                                                            <  1:532583/140‑1 (MQ=255)

                                    cTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCtt                                                                                           >  1:120876/1‑140 (MQ=255)

                                         cGCAATTGTTAATTTTGACATTTTTCATCTCTTGATTTTAGGTAATAGCAGGACCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTc                                                                                      >  2:844838/1‑140 (MQ=255)

                                            aaTTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGa                                                                                   <  1:1091678/140‑1 (MQ=255)

                                            aaTTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGa                                                                                   >  1:714298/1‑140 (MQ=255)

                                            aaTTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGAAAAATAAATCAGGTAGATTGCTTTTTTCAGa                                                                                   >  2:39436/1‑140 (MQ=255)

                                                 ttAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCa                                                                              >  1:1198431/1‑140 (MQ=255)

                                                  tAATTTTTACATTTTTCATCGCTTTATTTTAGGGAATAGCAGGTCCTCAATTTCTCGAATGATAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGTTAGATTGCTTTTTTCAGAATGCat                                                                             <  2:386130/140‑2 (MQ=255)

                                                  tAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAg                                                                             <  2:2056/140‑1 (MQ=255)

                                                    aTTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGaa                                                                           <  1:1196470/140‑1 (MQ=255)

                                                    aTTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGaa                                                                           <  2:1245446/140‑1 (MQ=255)

                                                     ttttGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGaaa                                                                          <  2:651555/140‑1 (MQ=255)

                                                      tttGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAAc                                                                         <  2:162453/140‑1 (MQ=255)

                                                         gACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCt                                                                      <  2:575256/140‑1 (MQ=255)

                                                                    actctTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAgg                                                           <  2:982861/139‑1 (MQ=255)

                                                                      tctTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTg                                                         <  1:120185/140‑1 (MQ=255)

                                                                      tctTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTg                                                         <  1:148514/140‑1 (MQ=255)

                                                                          tATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTg                                                     >  1:1099922/1‑140 (MQ=255)

                                                                          tATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTg                                                     >  1:816231/1‑140 (MQ=255)

                                                                          tATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTg                                                     >  1:893791/1‑140 (MQ=255)

                                                                           aTTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGa                                                    <  2:147257/140‑1 (MQ=255)

                                                                           aTTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGa                                                    <  1:324217/140‑1 (MQ=255)

                                                                                 ggTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATAc                                              >  2:1239868/1‑140 (MQ=255)

                                                                                 ggTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATAc                                              >  1:703356/1‑140 (MQ=255)

                                                                                 ggTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATAc                                              >  1:490041/1‑140 (MQ=255)

                                                                                  gTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGTTCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCATTCAGGTGGCTGATAATAct                                             >  2:532842/1‑139 (MQ=255)

                                                                                  gTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCATAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACa                                             >  1:1205232/1‑140 (MQ=255)

                                                                                  gTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACa                                             <  2:424464/140‑1 (MQ=255)

                                                                                  gTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACa                                             <  2:456768/140‑1 (MQ=255)

                                                                                  gTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACa                                             <  2:47798/140‑1 (MQ=255)

                                                                                  gTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACa                                             <  2:243947/140‑1 (MQ=255)

                                                                                  gTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACa                                             >  2:824479/1‑140 (MQ=255)

                                                                                  gTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACa                                             <  2:893791/140‑1 (MQ=255)

                                                                                  gTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACa                                             <  1:322705/140‑1 (MQ=255)

                                                                                  gTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACa                                             <  2:1198431/140‑1 (MQ=255)

                                                                                  gTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGAAAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACa                                             <  1:39436/140‑1 (MQ=255)

                                                                                      tAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAggt                                         >  2:29669/1‑139 (MQ=255)

                                                                                      tAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAggg                                         >  1:1105565/1‑140 (MQ=255)

                                                                                      tAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAggg                                         >  2:184027/1‑140 (MQ=255)

                                                                                      tAGCAGGGCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAggg                                         >  2:609696/1‑140 (MQ=255)

                                                                                       aGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGt                                        <  1:236463/140‑1 (MQ=255)

                                                                                       aGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGt                                        >  1:504430/1‑140 (MQ=255)

                                                                                           ggTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAAc                                    <  2:120876/140‑1 (MQ=255)

                                                                                           ggTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAAc                                    >  1:832205/1‑140 (MQ=255)

                                                                                           ggTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAAc                                    >  2:717669/1‑140 (MQ=255)

                                                                                            gTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACa                                   <  1:1239868/140‑1 (MQ=255)

                                                                                             tCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACat                                  >  2:226914/1‑139 (MQ=255)

                                                                                              ccTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACaga                                 >  2:1182864/1‑140 (MQ=255)

                                                                                               cTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACagag                                >  1:195058/1‑140 (MQ=255)

                                                                                                tCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAGTACAAGGGTTAACAgaga                               <  2:445614/140‑1 (MQ=255)

                                                                                                 cAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGaa                              >  2:388782/1‑140 (MQ=255)

                                                                                                     ttCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAg                          <  2:1098910/140‑1 (MQ=255)

                                                                                                     ttCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAg                          <  2:619654/140‑1 (MQ=255)

                                                                                                       ctcGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCa                        <  2:1243/140‑1 (MQ=255)

                                                                                                       ctcGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCa                        >  1:1173976/1‑140 (MQ=255)

                                                                                                         cGAATGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACt                      >  1:817279/1‑140 (MQ=255)

                                                                                                            aTGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTCCCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCg                   <  1:966051/140‑1 (MQ=255)

                                                                                                            aTGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTCCCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTAAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCg                   <  2:1003873/140‑1 (MQ=255)

                                                                                                            aTGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCg                   <  2:832205/140‑1 (MQ=255)

                                                                                                            aTGAGAAATCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCg                   <  1:273141/140‑1 (MQ=255)

                                                                                                                 aaaTCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATa              <  2:195058/140‑1 (MQ=255)

                                                                                                                  aaTCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATAc             <  1:193936/140‑1 (MQ=255)

                                                                                                                  aaTCGATCGTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATAc             <  2:1118909/140‑1 (MQ=255)

                                                                                                                         cgTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCata      >  2:593270/1‑140 (MQ=255)

                                                                                                                          gTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCatat     <  1:609696/140‑1 (MQ=255)

                                                                                                                          gTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCatat     <  1:717669/140‑1 (MQ=255)

                                                                                                                          gTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCatat     <  1:1182864/140‑1 (MQ=255)

                                                                                                                          gTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCatat     <  2:33095/140‑1 (MQ=255)

                                                                                                                          gTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCatat     <  2:817279/140‑1 (MQ=255)

                                                                                                                          gTGCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCatat     <  2:1099922/140‑1 (MQ=255)

                                                                                                                          gTGACGGAAAAAAGAAAAGTTGCCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTGCCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCatat     <  2:328124/140‑1 (MQ=255)

                                                                                                                            gCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCATATGc   <  1:844838/140‑1 (MQ=255)

                                                                                                                            gCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCATATGc   <  1:1112575/140‑1 (MQ=255)

                                                                                                                            gCCGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCATATGc   <  2:888019/140‑1 (MQ=255)

                                                                                                                             ccGGAAAAAAGAAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCATATGcc  >  2:620385/1‑140 (MQ=255)

TCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCATATGCC  >  NC_000913/720399‑720663

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A