Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F48 I1 R1	76	74.1	2532288	99.0%	2506965	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	885,091	G→T	A47E (GCG→GAG)	ybjH ←	uncharacterized protein YbjH

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	885,091	0	G	T	100.0%	271.6 / NA	76	A47E (GCG→GAG)	ybjH	uncharacterized protein YbjH
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (37/39); total (37/39)

ATGGTCGTCAATCTGGTGTTCGATAACCATCCCTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCGCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGCCACACCAGTAAAGCCCATTAAAAGCGCGCCCAACAGTAGACAATTTTT  >  NC_000913/884955‑885221

aTGGTCGTCAATCTGGTGTTCGATAACCATCCCTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCtt                                                                                                                                 >  2:584797/1‑140 (MQ=255)

aTGGTCGTCAATCTGGTGTTCGATAACCATCCCTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCtt                                                                                                                                 >  2:363873/1‑140 (MQ=255)

aTGGTCGTCAATCTGGTGTTCGATAACCATCCCTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCtt                                                                                                                                 >  2:1184560/1‑140 (MQ=255)

aTGGTCGTCAATCTGGTGTTCGATAACCATCCCTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCtt                                                                                                                                 >  2:1053724/1‑140 (MQ=255)

       tcAATCTGGTGTTCGATAACCATCCCTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAAc                                                                                                                          >  1:999636/1‑140 (MQ=255)

        cAATCTGGTGTTCGATAACCATCCCTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACg                                                                                                                         >  2:313823/1‑140 (MQ=255)

        cAATCTGGTGTTCGATAACCATCCCTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCAGCACAGTCGCGACGCTGACCTCTTGTGGAACg                                                                                                                         <  2:942802/140‑1 (MQ=255)

          aTCTGGTGTTCGATAACCATCCCTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGct                                                                                                                       <  2:1239796/140‑1 (MQ=255)

            cTGGTGTTCGATAACCATCCCTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGctga                                                                                                                     <  1:1005661/140‑1 (MQ=255)

             tGGTGTTCGATAACCATCCCTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGctgac                                                                                                                    >  1:392180/1‑140 (MQ=255)

              ggTGTTCGATAACCATCCCTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGctgact                                                                                                                   >  2:556802/1‑140 (MQ=255)

              ggTGTTCGATAACCATCCCTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGctgacg                                                                                                                   >  1:560674/1‑139 (MQ=255)

               gtgtTCGATAACCATCCCTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGTGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGctgactt                                                                                                                  >  2:343218/1‑139 (MQ=255)

               gtgtTCGATAACCATCCCTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGctgactg                                                                                                                  <  1:554640/140‑1 (MQ=255)

                  ttCGATAACCATCCCTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAAt                                                                                                               <  2:999636/140‑1 (MQ=255)

                  ttCGATAACCATCCCTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAAt                                                                                                               >  1:986573/1‑140 (MQ=255)

                    cGATAACCATCCCTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGTTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCa                                                                                                             >  1:1118049/1‑140 (MQ=255)

                    cGATAACCATCCCTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCa                                                                                                             <  2:1186499/140‑1 (MQ=255)

                    cGATAACCATCCCTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCa                                                                                                             >  2:1051137/1‑140 (MQ=255)

                         aCCATCCCTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGaac                                                                                                        <  2:669115/140‑1 (MQ=255)

                         aCCATCCCTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGaac                                                                                                        >  1:669115/1‑140 (MQ=255)

                               ccTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCCGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGaaccacaac                                                                                                  <  1:1184560/140‑1 (MQ=255)

                               ccTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGaaccacaac                                                                                                  <  1:363873/140‑1 (MQ=255)

                                cTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGCCGCTGACCTTTTGTGGAACGCTGACTGAATCAGGaaccacaacc                                                                                                 <  1:1053724/140‑1 (MQ=255)

                                 ttCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGaaccacaacca                                                                                                >  1:599804/1‑140 (MQ=255)

                                  tCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGaaccacaaccac                                                                                               >  1:1018700/1‑140 (MQ=255)

                                  tCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGaaccacaaccac                                                                                               <  1:1051137/140‑1 (MQ=255)

                                  tCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGaaccacaaccac                                                                                               >  2:1085992/1‑140 (MQ=255)

                                   cACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACt                                                                                              >  2:673404/1‑140 (MQ=255)

                                         cGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTAt                                                                                        >  1:241541/1‑140 (MQ=255)

                                           cTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATcc                                                                                      >  1:56901/1‑140 (MQ=255)

                                             ggCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCAc                                                                                    <  2:442937/140‑1 (MQ=255)

                                              gCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACt                                                                                   >  2:247572/1‑140 (MQ=255)

                                              gCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACt                                                                                   <  1:468194/140‑1 (MQ=255)

                                              gCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACt                                                                                   <  2:668168/140‑1 (MQ=255)

                                              gCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACt                                                                                   >  1:968558/1‑140 (MQ=255)

                                              gCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACt                                                                                   <  1:584797/140‑1 (MQ=255)

                                               cAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTc                                                                                  >  1:9778/1‑140 (MQ=255)

                                                       cGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATc                                                                          <  2:253226/140‑1 (MQ=255)

                                                       cGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATc                                                                          <  2:986573/140‑1 (MQ=255)

                                                       cGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATc                                                                          <  1:917962/140‑1 (MQ=255)

                                                       cGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATc                                                                          <  2:392180/140‑1 (MQ=255)

                                                               aGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGa                                                                  <  1:856512/140‑1 (MQ=255)

                                                                ggATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGac                                                                 >  2:90184/1‑140 (MQ=255)

                                                                ggATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGac                                                                 >  2:947921/1‑140 (MQ=255)

                                                                ggATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGac                                                                 >  1:435346/1‑140 (MQ=255)

                                                                     cgggcggTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACttt                                                            >  1:756594/1‑140 (MQ=255)

                                                                      gggcggTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTg                                                           >  1:897878/1‑140 (MQ=255)

                                                                      gggcggTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTg                                                           >  1:397689/1‑140 (MQ=255)

                                                                      gggcggTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTg                                                           >  2:1252663/1‑140 (MQ=255)

                                                                        gcggTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTgcg                                                         >  1:765482/1‑140 (MQ=255)

                                                                         gggTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTgcgc                                                        <  1:399253/139‑1 (MQ=255)

                                                                          ggTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGcc                                                       <  1:556802/140‑1 (MQ=255)

                                                                          ggTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGcc                                                       <  2:1034232/140‑1 (MQ=255)

                                                                          ggTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGcc                                                       <  2:9778/140‑1 (MQ=255)

                                                                           gTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCa                                                      >  1:1049320/1‑140 (MQ=255)

                                                                               gCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGc                                                  <  1:1016833/140‑1 (MQ=255)

                                                                               gCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGc                                                  <  1:1036788/140‑1 (MQ=255)

                                                                                   gAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGCcaca                                              <  1:783755/140‑1 (MQ=255)

                                                                                   gAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGCcaca                                              <  2:897878/140‑1 (MQ=255)

                                                                                    aGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGCCacac                                             <  2:968558/140‑1 (MQ=255)

                                                                                          cgcAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGCCACACCAGTaa                                       <  2:241541/140‑1 (MQ=255)

                                                                                          cgcAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGCCACACCAGTaa                                       <  2:1049320/140‑1 (MQ=255)

                                                                                            cAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGCCACACCAGTAAAg                                     <  1:247572/140‑1 (MQ=255)

                                                                                                        aGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGCCACACCAGTAAAGCCCATTAAAAgc                         >  2:326203/1‑140 (MQ=255)

                                                                                                        aGACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGCCACACCAGTAAAGCCCATTAAAAgc                         <  2:1018700/140‑1 (MQ=255)

                                                                                                         gACGGTTTGTGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGCCACACCAGTAAAGCCCATTAAAAgcg                        >  1:292154/1‑140 (MQ=255)

                                                                                                         gACGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGCCACACCAGTAAAGCCCATTAAAAgcg                        <  1:947921/140‑1 (MQ=255)

                                                                                                           cGGTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGCCACACCAGTAAAGCCCATTAAAAgcgcc                      >  1:1000276/1‑139 (MQ=255)

                                                                                                            ggTTTGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGCCACACCAGTAAAGCCCATTAAAAgcgcgc                     >  1:692726/1‑140 (MQ=255)

                                                                                                             gTTTGCGGCATAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACAACGACGGTGACACTTTGCGCCATCGCCACACCAGTAAAGCCCATTAAAAGCGCGcc                    <  2:103533/140‑1 (MQ=255)

                                                                                                               ttGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGCCACACCAGTAAAGCCCATTAAAAGCGCGCCCa                  <  2:397689/140‑1 (MQ=255)

                                                                                                                tGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGCCACACCAGTAAAGCCCATTAAAAGCGCGCCCaa                 >  2:669493/1‑140 (MQ=255)

                                                                                                                tGCGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGCCACACCAGTAAAGCCCATTAAAAGCGCGCCCaa                 >  2:54892/1‑140 (MQ=255)

                                                                                                                  cGGCACAGTCGCGACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCTCTCGGCACATCGACGGTGACACTTTGCGCCATCGCCACACCAGTAAAGCCCATTAAAAGCGCGCCCAACa               <  1:343218/140‑1 (MQ=255)

                                                                                                                           cgcgACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGCCACACCAGTAAAGCCCATTAAAAGCGCGCCCAACAGTAGACAAt      <  1:1252663/140‑1 (MQ=255)

                                                                                                                             cgACGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGCCACACCAGTAAAGCCCATTAAAAGCGCGCCCAACAGTAGACAAttt    >  1:134873/1‑140 (MQ=255)

                                                                                                                               aCGCTGACCTCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGCCACACCAGTAAAGCCCATTAAAAGCGCGCCCAACAGTAGACAAttttt  <  2:756594/140‑1 (MQ=255)

ATGGTCGTCAATCTGGTGTTCGATAACCATCCCTTCACCTACGCTGGCAAGATGGCGAACATAAGGATGCGGGCGGTAAGCCGGAGCTGGCGCAGGAGCCACATAGACGGTTTGCGGCACAGTCGCGACGCTGACCGCTTGTGGAACGCTGACTGAATCAGGAACCACAACCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGCCACACCAGTAAAGCCCATTAAAAGCGCGCCCAACAGTAGACAATTTTT  >  NC_000913/884955‑885221

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A