Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F48 I1 R1 76 74.1 2532288 99.0% 2506965 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 903,112 G→T A208D (GCC→GAC)  artP ← L‑arginine ABC transporter ATP binding subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913903,1120GT100.0% 247.3 / NA 69A208D (GCC→GAC) artPL‑arginine ABC transporter ATP binding subunit
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (46/23);  total (46/23)

TTCATTGTTGTTATCCCGAATCTTAGTGAGAGAGATAGTTTTTAAATGCTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGGCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTGCGGCGGTCGGTTCATCGAACAGC  >  NC_000913/902984‑903246
                                                                                                                                |                                                                                                                                      
ttCATTGTTGTTATCCCGAATCTTAGTGAGAGAGATAGTTTTTAAATGCTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTAcgc                                                                                                                             >  1:798057/1‑140 (MQ=255)
  cATTGTTGTTATCCCGAATCTTAGTGAGAGAGATAGTTTTTAAATGCTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACgcgc                                                                                                                           <  2:798057/140‑1 (MQ=255)
   aTTGTTGTTATCCCGAATCTTAGTGAGAGAGATAGTTTTTAAATGCTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGcc                                                                                                                          >  1:647993/1‑140 (MQ=255)
             tCCCGAATCTTAGTGAGAGAGATAGTTTTTAAATGCTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACtt                                                                                                                >  1:1060744/1‑140 (MQ=255)
                  aaTCTTAGTGAGAGAGATAGTTTTTAAATGCTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTgg                                                                                                           >  2:1091187/1‑140 (MQ=255)
                   aTCTTAGTGAGAGAGATAGTTTTTAAATGCTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTggg                                                                                                          <  2:1117360/140‑1 (MQ=255)
                        aGTGAGAGAGATAGTTTTTAAATGCTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACg                                                                                                     <  1:179159/140‑1 (MQ=255)
                             gagagaTAGTTTTTAAATGCTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCAc                                                                                                >  1:193672/1‑140 (MQ=255)
                              agagaTAGTTTTTAAATGCTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACg                                                                                                     <  2:905754/134‑1 (MQ=255)
                              agagaTAGTTTTTAAATGCTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACg                                                                                                     >  1:905754/1‑134 (MQ=255)
                               gagaTAGTTTTTAAATGCTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCt                                                                                              <  2:647993/140‑1 (MQ=255)
                                agaTAGTTTTTAAATGCTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTg                                                                                             <  1:1091187/140‑1 (MQ=255)
                                 gaTAGTTTTTAAATGCTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTgg                                                                                            >  1:145644/1‑140 (MQ=255)
                                  aTAGTTTTTAAATGCTTCGGTTTGTGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTggt                                                                                           >  2:127450/1‑139 (MQ=255)
                                  aTAGTTTTTAAATGCTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCAc                                                                                                <  1:380245/135‑1 (MQ=255)
                                  aTAGTTTTTAAATGCTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCAc                                                                                                >  2:380245/1‑135 (MQ=255)
                                    aGTTTTTAAATGCTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTa                                                                                         >  1:118937/1‑140 (MQ=255)
                                        tttAAATGCTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTggg                                                                                           >  2:738334/1‑134 (MQ=255)
                                        tttAAATGCTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTggg                                                                                           <  1:738334/134‑1 (MQ=255)
                                        tttAAATGCTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAatat                                                                                     >  1:650082/1‑140 (MQ=255)
                                               gCTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGtttt                                                                              >  2:1125937/1‑139 (MQ=255)
                                                cTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCt                                                                             >  2:226385/1‑140 (MQ=255)
                                                cTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCt                                                                             >  2:369245/1‑140 (MQ=255)
                                                cTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCt                                                                             >  2:397670/1‑140 (MQ=255)
                                                  tCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGc                                                                           <  2:118937/140‑1 (MQ=255)
                                                        tGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTc                                                                     <  2:193672/140‑1 (MQ=255)
                                                                  tAAAGCAGCTCGCGTCGCCTTGTTCTTCGATATGACCCTTTTCCATATACACCACTCGGCTGTCGGTTTTAAGCGCCACTTCAACTTCTTGGGTGACGATCACCTGGGGAATATTCGTTTCTTCCAGCTCACGAatgatt                                                           >  2:401882/1‑139 (MQ=255)
                                                                  tAAAGCAGCTCGCGTAGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAatgatg                                                           >  2:676724/1‑140 (MQ=255)
                                                                          cTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGAt                                                   >  2:994164/1‑140 (MQ=255)
                                                                           tCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGAtt                                                  >  2:1051368/1‑140 (MQ=255)
                                                                            cgcgTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGAttt                                                 <  1:397670/140‑1 (MQ=255)
                                                                              cgTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTtgt                                               >  2:267983/1‑140 (MQ=255)
                                                                                 cGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGcc                                            >  2:782222/1‑140 (MQ=255)
                                                                                        ttCTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAAttt                                     >  2:810345/1‑140 (MQ=255)
                                                                                         tCTAAGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTc                                    <  2:650082/140‑1 (MQ=255)
                                                                                          cTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTcc                                   <  1:994164/140‑1 (MQ=255)
                                                                                          cTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTcc                                   <  1:1051368/140‑1 (MQ=255)
                                                                                          cTACGATATGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTcc                                   <  1:676724/140‑1 (MQ=255)
                                                                                               atatGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTc                              <  2:145644/140‑1 (MQ=255)
                                                                                                tatGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTcc                             >  2:887079/1‑140 (MQ=255)
                                                                                                tatGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTcc                             >  2:127630/1‑140 (MQ=255)
                                                                                                  tGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCat                           >  2:1093340/1‑139 (MQ=255)
                                                                                                  tGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAg                           >  2:690828/1‑140 (MQ=255)
                                                                                                  tGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAg                           >  2:408073/1‑140 (MQ=255)
                                                                                                  tGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAg                           >  2:1122500/1‑140 (MQ=255)
                                                                                                  tGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAg                           >  2:902073/1‑140 (MQ=255)
                                                                                                  tGACCATTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAg                           >  1:704436/1‑140 (MQ=255)
                                                                                                       aTTTTCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTgcgg                      >  1:359062/1‑140 (MQ=255)
                                                                                                        ttttCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTgcggc                     >  1:289849/1‑140 (MQ=255)
                                                                                                          ttCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTGcggcgg                   >  1:851662/1‑140 (MQ=255)
                                                                                                           tCCATATACACCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTGCGGcggt                  <  1:1093340/140‑1 (MQ=255)
                                                                                                                  acacCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTGCGGCGGTCGGTTCa           <  1:127450/140‑1 (MQ=255)
                                                                                                                  acacCACTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTGCGGCGGTCGGTTCa           <  1:770446/140‑1 (MQ=255)
                                                                                                                   caccacTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTGCGGCGGTCGGTTCAt          >  2:270606/1‑140 (MQ=255)
                                                                                                                    accacTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTGCGCCGGCCGGTTCATc         >  1:424779/1‑140 (MQ=255)
                                                                                                                      cacTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTGCGGCGGTCGGTTCATCGa       >  1:920870/1‑140 (MQ=255)
                                                                                                                      cacTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTGCGGCGGTCGGTTCATCGa       >  1:1222936/1‑140 (MQ=255)
                                                                                                                      cacTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTGCGGCGGTCGGTTCATCGa       >  2:434621/1‑140 (MQ=255)
                                                                                                                       acTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTGCGGCGGTCGGTTCATCGaa      <  1:226385/140‑1 (MQ=255)
                                                                                                                       acTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTGCGGCGGTCGGTTCATCGaa      <  2:222021/140‑1 (MQ=255)
                                                                                                                       acTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAACTTCCGGGTCCAGTGCGGCGGTCGGTTCATCGaa      >  1:343298/1‑140 (MQ=255)
                                                                                                                        cTCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTGCGGCGGTCGGTTCATCGAAc     >  2:701762/1‑140 (MQ=255)
                                                                                                                         tCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTGCGGCGGTCGGTTCATCGAAca    >  1:1217313/1‑140 (MQ=255)
                                                                                                                         tCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTGCGGCGGTCGGTTCATCGAAca    >  2:1041634/1‑140 (MQ=255)
                                                                                                                         tCGGCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATAACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTGCGGCGGTCGGTTCATCGaaaa    >  2:972136/1‑138 (MQ=255)
                                                                                                                           ggCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACTATTTGTGCCGTAATTTCCGGGTCCAGTGCGGCGGTCCGTTCATCGAAcagc  >  2:1245909/1‑140 (MQ=255)
                                                                                                                           ggCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTGCGGCGGTCGGTTCATCGAAcagc  >  1:429710/1‑140 (MQ=255)
                                                                                                                           ggCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTGCGGCGGTCGGTTCATCGAAcagc  <  1:810345/140‑1 (MQ=255)
                                                                                                                           ggCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTGCGGCGGTCGGTTCATCGAAcagc  >  2:1112031/1‑140 (MQ=255)
                                                                                                                           ggCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTGCGGCGGTCGGTTCATCGAAcagc  >  1:842604/1‑140 (MQ=255)
                                                                                                                           ggCTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTGCGGCGGTCGGTTCATCGAAcagc  <  1:902073/140‑1 (MQ=255)
                                                                                                                             cTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTGCGGCGGTCGGTTCATCGAAcagc  <  1:2567/138‑1 (MQ=255)
                                                                                                                             cTGTCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTGCGGCGGTCGGTTCATCGAAcagc  >  2:2567/1‑138 (MQ=255)
                                                                                                                                |                                                                                                                                      
TTCATTGTTGTTATCCCGAATCTTAGTGAGAGAGATAGTTTTTAAATGCTTCGGTTTGCGGCTCGGTAAAGCAGCTCGCGTCGCCTTGTTCTACGATATGACCATTTTCCATATACACCACTCGGCTGGCGGTTTTACGCGCCACTTCAACTTCGTGGGTGACGATCACCTGGGTAATATTCGTTTCTGCCAGCTCACGAATGATGCTGACGATTTGTGCCGTAATTTCCGGGTCCAGTGCGGCGGTCGGTTCATCGAACAGC  >  NC_000913/902984‑903246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A