Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A16 F48 I1 R1 61 131.2 4447032 99.1% 4407008 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 830,202 G→T L148M (CTG→ATG)  cecR ← DNA‑binding transcriptional dual regulator CecR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913830,2020GT100.0% 425.8 / NA 118L148M (CTG→ATG) cecRDNA‑binding transcriptional dual regulator CecR
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (48/70);  total (48/70)

Only 100 of 120 total aligned reads displayed.

TCCAGCCGGTACGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGACGGTGTCATCCTGGGTGAGCAGCTTAATCATGTTCCTGCA  >  NC_000913/830067‑830337
                                                                                                                                       |                                                                                                                                       
tCCAGCCGGTACGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTgg                                                                                                                                     <  2:1711794/140‑1 (MQ=255)
  cAGCCGGTACGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCt                                                                                                                                   <  1:1440326/140‑1 (MQ=255)
  cAGCCGGTACGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCt                                                                                                                                   <  1:1753225/140‑1 (MQ=255)
  aaGCCGGTACGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCt                                                                                                                                   <  2:1721845/139‑1 (MQ=255)
    gCCGGTACGTAACAGAATTGTTTCTTTGCCAAGAC‑GAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCtgtg                                                                                                                                <  1:938925/140‑1 (MQ=255)
        gTACGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAg                                                                                                                             >  1:858114/1‑140 (MQ=255)
        gTACGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAg                                                                                                                             >  1:1068237/1‑140 (MQ=255)
         tACGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGc                                                                                                                            <  2:133354/140‑1 (MQ=255)
          aCGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCg                                                                                                                           <  2:655330/140‑1 (MQ=255)
          aCGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCg                                                                                                                           <  2:2180809/140‑1 (MQ=255)
          aCGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCg                                                                                                                           >  1:816874/1‑140 (MQ=255)
          aCGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCg                                                                                                                           <  1:1751678/140‑1 (MQ=255)
          aCGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCg                                                                                                                           <  1:1056536/140‑1 (MQ=255)
          aCGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCg                                                                                                                           <  1:1714580/140‑1 (MQ=255)
          aCGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCg                                                                                                                           <  2:1540096/140‑1 (MQ=255)
          aCGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCg                                                                                                                           <  1:1602480/140‑1 (MQ=255)
            gTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGa                                                                                                                         <  2:737481/140‑1 (MQ=255)
               aCAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTa                                                                                                                      <  2:1964262/140‑1 (MQ=255)
                   aaTTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCa                                                                                                                  <  1:1102024/140‑1 (MQ=255)
                   aaTTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCa                                                                                                                  >  1:958538/1‑140 (MQ=255)
                     ttGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCAcc                                                                                                                <  1:1539728/140‑1 (MQ=255)
                      tGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCt                                                                                                               <  2:1100808/140‑1 (MQ=255)
                      tGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCACAGCCGGTCCAGGCAGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCt                                                                                                               <  1:930912/140‑1 (MQ=255)
                          tCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTc                                                                                                           >  2:1620322/1‑140 (MQ=255)
                          tCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTc                                                                                                           >  1:1221777/1‑140 (MQ=255)
                           cTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCg                                                                                                          >  1:1939691/1‑140 (MQ=255)
                             ttGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTg                                                                                                        <  1:19541/140‑1 (MQ=255)
                               gCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCa                                                                                                      <  1:1292919/140‑1 (MQ=255)
                                ccAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCAc                                                                                                     <  2:113876/140‑1 (MQ=255)
                                 cAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCAGTCCAGGCGGCAATCAGGCGTGTAATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCAcc                                                                                                    <  2:1479675/140‑1 (MQ=255)
                                 aaaGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCAcc                                                                                                    <  2:919508/139‑1 (MQ=255)
                                    gACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAgg                                                                                                 <  2:920365/140‑1 (MQ=255)
                                      aggAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAggtg                                                                                               <  2:1253218/139‑1 (MQ=255)
                                      aggAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAggtg                                                                                               <  2:138306/139‑1 (MQ=255)
                                          aCGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAg                                                                                           >  2:1058482/1‑140 (MQ=255)
                                          aCGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAg                                                                                           >  2:1864886/1‑140 (MQ=255)
                                          aCGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAg                                                                                           <  1:609707/140‑1 (MQ=255)
                                            gCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGc                                                                                         <  1:1010368/140‑1 (MQ=255)
                                            gCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGc                                                                                         <  2:353994/140‑1 (MQ=255)
                                            gCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGc                                                                                         <  2:24246/140‑1 (MQ=255)
                                              cAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTg                                                                                       >  1:1202073/1‑140 (MQ=255)
                                              cAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTg                                                                                       <  2:1759701/140‑1 (MQ=255)
                                               aGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGc                                                                                      >  2:937468/1‑140 (MQ=255)
                                                 aaTCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCg                                                                                    <  2:470054/140‑1 (MQ=255)
                                                 aaTCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGGGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCg                                                                                    >  2:1470399/1‑140 (MQ=255)
                                                      cACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGga                                                                               >  1:1157201/1‑140 (MQ=255)
                                                           aTCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGagagag                                                                          <  1:1501069/140‑1 (MQ=255)
                                                           aTCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGagagag                                                                          <  1:1620322/140‑1 (MQ=255)
                                                            tCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGagagagt                                                                         >  2:653049/1‑139 (MQ=255)
                                                             aaaCGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAgct                                                                        <  2:724181/139‑1 (MQ=255)
                                                                cGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAgctgct                                                                     >  2:1777592/1‑140 (MQ=255)
                                                                  cATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCa                                                                   <  1:1058482/140‑1 (MQ=255)
                                                                  cATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCa                                                                   <  1:937468/140‑1 (MQ=255)
                                                                   aTGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCAc                                                                  >  1:1334817/1‑140 (MQ=255)
                                                                    tGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACg                                                                 <  2:1202073/140‑1 (MQ=255)
                                                                     gggTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACgg                                                                >  2:880909/1‑140 (MQ=255)
                                                                      ggTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACggg                                                               >  2:679150/1‑140 (MQ=255)
                                                                         aTGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGgaga                                                            <  1:880909/140‑1 (MQ=255)
                                                                          tGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGAt                                                           >  1:1582218/1‑140 (MQ=255)
                                                                          tGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGAt                                                           >  1:1364012/1‑140 (MQ=255)
                                                                                 tCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTGACGGGAGATAAACTTg                                                    >  2:1761389/1‑140 (MQ=255)
                                                                                 tCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTg                                                    >  1:1345164/1‑140 (MQ=255)
                                                                                 tCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTg                                                    >  1:55624/1‑140 (MQ=255)
                                                                                 tCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTg                                                    >  1:1352237/1‑140 (MQ=255)
                                                                                 tCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTg                                                    >  1:1442059/1‑140 (MQ=255)
                                                                                 tCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTg                                                    >  2:415147/1‑140 (MQ=255)
                                                                                 tCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTg                                                    >  1:1547640/1‑140 (MQ=255)
                                                                                 tCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTg                                                    >  1:1758430/1‑140 (MQ=255)
                                                                                  cATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGc                                                   >  2:302674/1‑140 (MQ=255)
                                                                                    tGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTg                                                 >  1:1829409/1‑140 (MQ=255)
                                                                                    tGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTg                                                 >  1:1171373/1‑140 (MQ=255)
                                                                                    tGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTg                                                 >  1:1923643/1‑140 (MQ=255)
                                                                                    tGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTg                                                 >  1:747678/1‑140 (MQ=255)
                                                                                    agggggCGTCATTGACCCCGCAGGCGGTCCCTGAGGGAATCAGGCGTGTCGTGTGGCTGGGTCGCGGACTAATCACCTGTTCGTGCACCAGGGGGTAGGCTGCCGTGGGAGATATCTGCTCACGGGAGATCAACTTGCtt                                                 >  2:2009481/4‑139 (MQ=255)
                                                                                      cGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAg                                               <  1:1978651/140‑1 (MQ=255)
                                                                                       gggTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAgg                                              <  1:1015421/140‑1 (MQ=255)
                                                                                          tgtCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGttt                                           >  2:1772893/1‑139 (MQ=255)
                                                                                           gtCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAgg                                              <  1:386604/136‑1 (MQ=255)
                                                                                           gtCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAgg                                              >  2:386604/1‑136 (MQ=255)
                                                                                           gtCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGa                                          <  2:2112083/140‑1 (MQ=255)
                                                                                           gtCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGa                                          <  2:782833/140‑1 (MQ=255)
                                                                                           gtCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGa                                          <  2:1157201/140‑1 (MQ=255)
                                                                                           gtCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGa                                          <  2:55624/140‑1 (MQ=255)
                                                                                           gtCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGa                                          <  2:1364012/140‑1 (MQ=255)
                                                                                               ttGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGACGgt                                      <  2:1352237/140‑1 (MQ=255)
                                                                                               ttGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGACGgt                                      <  2:1582218/140‑1 (MQ=255)
                                                                                               ttGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGACGgt                                      <  1:878600/140‑1 (MQ=255)
                                                                                               ttGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGACGgt                                      <  2:1856382/140‑1 (MQ=255)
                                                                                               ttGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGACGgt                                      <  1:1525754/140‑1 (MQ=255)
                                                                                                tGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGACGgtg                                     <  2:1829409/140‑1 (MQ=255)
                                                                                                tGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGACGgtg                                     <  2:747678/140‑1 (MQ=255)
                                                                                                 ggCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGACGgtgt                                    <  1:415147/140‑1 (MQ=255)
                                                                                                 ggCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGGTGACGgtgt                                    <  2:1095562/140‑1 (MQ=255)
                                                                                                   cGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCGGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGACGgtgt                                    >  2:331377/1‑138 (MQ=255)
                                                                                                   cGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGACGgtgt                                    <  1:331377/138‑1 (MQ=255)
                                                                                                   cGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGACGGTGTCa                                  >  1:2069831/1‑140 (MQ=255)
                                                                                                      cGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGACGGTGTCATcc                               >  2:2133618/1‑140 (MQ=255)
                                                                                                             ggTCCAGGCGGCAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGACGGTGTCATCCTGGGTGa                        <  1:1772893/140‑1 (MQ=255)
                                                                                                                        cAATCAGGCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGACGGTGTCATCCTGGGTGAGCAGCTTAATc             >  2:1459800/1‑140 (MQ=255)
                                                                                                                               gCGTGTCATGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGACGGTGTCATCCTGGGTGAGCAGCTTAATCATGTTcc      >  2:906280/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                       
TCCAGCCGGTACGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGACGGTGTCATCCTGGGTGAGCAGCTTAATCATGTTCCTGCA  >  NC_000913/830067‑830337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A