Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A16 F48 I1 R1 61 131.2 4447032 99.1% 4407008 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 995,601 C→A E130* (GAA→TAA)  ssuD ← FMNH2‑dependent alkanesulfonate monooxygenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913995,6010CA100.0% 288.1 / NA 80E130* (GAA→TAA) ssuDFMNH2‑dependent alkanesulfonate monooxygenase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (36/44);  total (36/44)

TAAAGTGGCGGATACGGCTGTTGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTCGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTCCATTTGAGAGACGGTCAAGCGTGGCGGCCTGGCGGGCGGCAACGGTAGGT  >  NC_000913/995465‑995737
                                                                                                                                         |                                                                                                                                        
taaagtGGCGGATACGGCTGTTGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTa                                                                                                                                       <  1:1480611/140‑1 (MQ=255)
   agtGGCGGATACGGCTGTTGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAgcg                                                                                                                                    <  1:1097348/140‑1 (MQ=255)
   agtGGCGGATACGGCTGTTGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAgcg                                                                                                                                    <  1:1327165/140‑1 (MQ=255)
   agtGGCGGATACGGCTGTTGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAgcg                                                                                                                                    <  1:63717/140‑1 (MQ=255)
   agtGGCGGATACGGCTGTTGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAgcg                                                                                                                                    <  1:442819/140‑1 (MQ=255)
   agtGGCGGATACGGCTGTTGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAgcg                                                                                                                                    <  1:220884/140‑1 (MQ=255)
   agtGGCGGATACGGCTGTTGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAgcg                                                                                                                                    <  1:1881069/140‑1 (MQ=255)
    gtGGCGGATACGGCTGTTGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAgcgc                                                                                                                                   <  1:1481483/140‑1 (MQ=255)
       gCGGATACGGCTGTTGAATCGCCGGGAGGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGcgctcg                                                                                                                                <  2:581686/140‑1 (MQ=255)
       gCGGATACGGCTGTTGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATG‑TTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGcgctcgc                                                                                                                               <  2:229144/140‑1 (MQ=255)
        cGGATACGGCTGTTGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGcgctcgc                                                                                                                               <  2:1587978/140‑1 (MQ=255)
          gATACGGCTGTTGAATTCCCGGGGAGAGCAGGTTTTCTTCCCGCACAAGAATATTTTTTCCGCTGAAAATGACGGTTTCTCTCTGCAATAAAAGCCGGCCGACCTTGGGAAATTCCCCCGATGGCTT‑GTAGcgctcgctt                                                                                                                             >  2:1301973/1‑139 (MQ=255)
          gATACGGCTGTTGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTa                                                                                                                             <  1:2209837/140‑1 (MQ=255)
           aTACGGCTGTTGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTAt                                                                                                                            <  1:855413/140‑1 (MQ=255)
           aTACGGCTGTTGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTAt                                                                                                                            <  1:1668587/140‑1 (MQ=255)
             aCGGCTGTTGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGa                                                                                                                          <  1:782073/140‑1 (MQ=255)
               ggCTGTTGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATc                                                                                                                        >  1:481076/1‑140 (MQ=255)
                    ttGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGcgctcgct                                                                                                                              <  2:341391/129‑1 (MQ=255)
                    ttGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGcgctcgct                                                                                                                              >  1:341391/1‑129 (MQ=255)
                    ttGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGcgctcgc                                                                                                                               <  2:2096879/128‑1 (MQ=255)
                    ttGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGcgctcgc                                                                                                                               >  1:2096879/1‑128 (MQ=255)
                    ttGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGa                                                                                                                   >  2:984962/1‑140 (MQ=255)
                    ttGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGa                                                                                                                   >  1:1335953/1‑140 (MQ=255)
                    ttGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGa                                                                                                                   >  1:2144252/1‑140 (MQ=255)
                     tGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGaa                                                                                                                  <  1:2053218/140‑1 (MQ=255)
                               ggAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCg                                                                                                        <  2:507254/140‑1 (MQ=255)
                                     gCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGcc                                                                                                  <  2:481076/140‑1 (MQ=255)
                                       aGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAg                                                                                                <  1:1301973/140‑1 (MQ=255)
                                       aGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAg                                                                                                <  2:1335953/140‑1 (MQ=255)
                                       aGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAg                                                                                                <  2:2144252/140‑1 (MQ=255)
                                       aGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAg                                                                                                <  1:336442/140‑1 (MQ=255)
                                           ttGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGctct                                                                                            >  1:1325011/1‑140 (MQ=255)
                                              cTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTtgt                                                                                         >  1:229834/1‑140 (MQ=255)
                                              cTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTtgt                                                                                         <  2:1533956/140‑1 (MQ=255)
                                                 cgcgCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGa                                                                                      >  2:1931876/1‑140 (MQ=255)
                                                   cgcACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATc                                                                                    >  1:1616094/1‑140 (MQ=255)
                                                   cgcACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATc                                                                                    >  2:1369877/1‑140 (MQ=255)
                                                   cgcACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATc                                                                                    >  2:765284/1‑140 (MQ=255)
                                                   cgcACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATc                                                                                    >  1:1933135/1‑140 (MQ=255)
                                                     cacaTGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGc                                                                                  <  1:598130/140‑1 (MQ=255)
                                                         tGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGTTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGACAGCTCTTGTGGATCGCTGcc                                                                              <  1:96792/140‑1 (MQ=255)
                                                              atGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGa                                                                         <  1:765284/140‑1 (MQ=255)
                                                                gTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGAcc                                                                       >  2:916166/1‑140 (MQ=255)
                                                                gTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGAcc                                                                       >  2:1911514/1‑140 (MQ=255)
                                                                gTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGAcc                                                                       >  2:1900348/1‑140 (MQ=255)
                                                                gTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGAcc                                                                       <  2:1616094/140‑1 (MQ=255)
                                                                  ttACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAg                                                                     >  1:1360974/1‑140 (MQ=255)
                                                                    aCCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGt                                                                   >  1:1945273/1‑140 (MQ=255)
                                                                    aCCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGt                                                                   >  2:1565451/1‑140 (MQ=255)
                                                                    aCCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGt                                                                   >  2:2163210/1‑140 (MQ=255)
                                                                      cGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTa                                                                 >  1:1257583/1‑140 (MQ=255)
                                                                      cGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTa                                                                 >  1:1754759/1‑140 (MQ=255)
                                                                        ttGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTaaa                                                               >  1:202146/1‑140 (MQ=255)
                                                                         tGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAaac                                                              <  1:356810/140‑1 (MQ=255)
                                                                          gAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAaaca                                                             >  1:2163786/1‑140 (MQ=255)
                                                                              tCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGc                                                         <  1:1369877/140‑1 (MQ=255)
                                                                                 aCGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACg                                                      <  2:202146/140‑1 (MQ=255)
                                                                                  cGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGt                                                     <  2:1325011/140‑1 (MQ=255)
                                                                                  cGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGt                                                     >  2:95355/1‑140 (MQ=255)
                                                                                   ggTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTc                                                    <  1:916166/140‑1 (MQ=255)
                                                                                   ggTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTc                                                    <  1:1900348/140‑1 (MQ=255)
                                                                                   ggTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTc                                                    <  1:1565451/140‑1 (MQ=255)
                                                                                          ctctGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTCCATTTga                                             >  2:262975/1‑140 (MQ=255)
                                                                                             tGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGTTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTCCATTTgagag                                          <  1:932605/140‑1 (MQ=255)
                                                                                             tGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTCCATTTgagag                                          <  1:984962/140‑1 (MQ=255)
                                                                                              gCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTCCATTTgagaga                                         >  2:1312057/1‑140 (MQ=255)
                                                                                               cAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTCCAtt                                                >  2:1837654/1‑132 (MQ=255)
                                                                                               cAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTCCAtt                                                <  1:1837654/132‑1 (MQ=255)
                                                                                                       gccgccAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTCCATTTGAGAGACGGTCAAGc                                >  2:1048641/1‑140 (MQ=255)
                                                                                                         cgccAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTCCATTTGAGAGACGGTCAAGCGt                              >  1:1336854/1‑140 (MQ=255)
                                                                                                         cgccAGACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTCCATTTGAGAGACGGTCAAGCGt                              >  2:299093/1‑140 (MQ=255)
                                                                                                              gACCTGGGTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTCCATTTGAGAGACGGTCAAGCGTggcgg                         >  1:563716/1‑140 (MQ=255)
                                                                                                                   gggTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTCCATTTGAGAGACGGTCAAGCGTGGCGGCCTgg                    >  2:1171821/1‑140 (MQ=255)
                                                                                                                   gggTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTCCATTTGAGAGACGGTCAAGCGTGGCGGCCTgg                    >  1:99994/1‑140 (MQ=255)
                                                                                                                    gatAAATTCCGCCGA‑GGCTTAGTAGCGCTTGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTCCATTTGAGAGACGGTCAAGCGTGGCGGCCTggc                   >  2:1616187/3‑140 (MQ=255)
                                                                                                                     gTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTCCATTTGAGAGACGGTCAAGCGTGGCGGCCTggcg                  <  2:229834/140‑1 (MQ=255)
                                                                                                                     gTAAATTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGCGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTCCATTTGAGAGACGGTCAAGCGTGGCGGCCTggcg                  >  2:1986462/1‑140 (MQ=255)
                                                                                                                         aTTCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTCCATTTGAGAGACGGTCAAGCGTGGCGGCCTggcgggcg              >  2:788359/1‑140 (MQ=255)
                                                                                                                           tCCGCCGA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTCCATTTGAGAGACGGTCAAGCGTGGCGGCCTGGCGggcggc            <  2:1360974/140‑1 (MQ=255)
                                                                                                                               ccgA‑GGCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTCCATTTGAGAGACGGTCAAGCGTGGCGGCCTGGCGGGCGGCAACg        <  1:1312057/140‑1 (MQ=255)
                                                                                                                                     gCTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTCCATTTGAGAGACGGTCAAGCGTGGCGGCCTGGCGGGCGGCAACGGTAgg   <  1:1048641/140‑1 (MQ=255)
                                                                                                                                      cTTAGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTCCATTTGAGAGACGGTCAAGCGTGGCGGCCTGGCGGGCGGCAACGGTAGGt  <  1:830719/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
TAAAGTGGCGGATACGGCTGTTGAATCGCCGGGAAGAGCAGTTTTGCTCCGCGCACATGAATATGTTTACCGTTGAAATCGACGGTTTCTCTCTGCAATAAACGCCGCCAGACCTGGGTAAATTCCGCCGA‑GGCTTCGTAGCGCTCGCTATGATCAAGGAACACTCCGTCGCCTGCCAGCTCTTGTGGATCGCTGCCTGTGACCAGGTTAAACAACGCACGTCCATTTGAGAGACGGTCAAGCGTGGCGGCCTGGCGGGCGGCAACGGTAGGT  >  NC_000913/995465‑995737

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A