Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F48 I1 R1	70	151.6	5072932	98.7%	5006983	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	996,639	G→T	G102G (GGC→GGA)	ssuA ←	aliphatic sulfonate ABC transporter periplasmic binding protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	996,639	0	G	T	100.0%	525.1 / NA	147	G102G (GGC→GGA)	ssuA	aliphatic sulfonate ABC transporter periplasmic binding protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (79/68); total (79/68)

Only 100 of 151 total aligned reads displayed.

TGCACGCAGTAAAAGGTTGTGTGAACTGGAACCTTTCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACGCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCGGACCCGCGGGGAACTCCACCCAGGAGAT  >  NC_000913/996504‑996773

tGCACGCAGTAAAAGGTTGTGTGAACTGGAACCTTTCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCa                                                                                                                                    >  1:549156/1‑140 (MQ=255)

tGCACGCAGTAAAAGGTTGTGTGAACTGGAACCTTTCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCa                                                                                                                                    >  1:1534111/1‑140 (MQ=255)

  cACGCAGTAAAAGGTTGTGTGAACTGGAACCTTTCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACg                                                                                                                                  <  2:1534111/140‑1 (MQ=255)

       aGTAAAAGGTTGTGTGAACTGGAACCTTTCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTacac                                                                                                                             <  1:1054140/140‑1 (MQ=255)

       aGTAAAAGGTTGTGTGAACTGGAACCTTTCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTacac                                                                                                                             <  1:339964/140‑1 (MQ=255)

          aaaaGGTTGTGTGAACTGGAACCTTTCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCaa                                                                                                                          >  1:2187235/1‑140 (MQ=255)

            aaGGTTGTGTGAACTGGAACCTTTCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAAt                                                                                                                        >  2:2056128/1‑140 (MQ=255)

              ggTTGTGTGAACTGGAACCTTTCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCa                                                                                                                      >  1:1320084/1‑140 (MQ=255)

                 tgtgtgAACTGGAACCTTTCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGcc                                                                                                                   >  1:703663/1‑140 (MQ=255)

                 tgtgtgAACTGGAACCTTTCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGcc                                                                                                                   >  1:2158398/1‑140 (MQ=255)

                 tgtgtgAACTGGAACCTTTCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGcc                                                                                                                   >  1:1739299/1‑140 (MQ=255)

                  gtgtgAACTGGAACCTTTCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGccc                                                                                                                  >  1:1707884/1‑140 (MQ=255)

                  gtgtgAACTGGAACCTTTCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGccc                                                                                                                  >  2:406974/1‑140 (MQ=255)

                   tgtgAACTGGAACCTTTCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCTCACGTACACCAAATCAGcccc                                                                                                                 >  2:691463/1‑140 (MQ=255)

                   tgtgAACTGGAACCTTTCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGcccc                                                                                                                 >  1:741468/1‑140 (MQ=255)

                   tgtgAACTGGAACCTTTCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGcccc                                                                                                                 >  1:242533/1‑140 (MQ=255)

                   tgtgAACTGGAACCTTTCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGcccc                                                                                                                 >  1:249865/1‑140 (MQ=255)

                   tgtgAACTGGAACCTTTCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGcccc                                                                                                                 >  1:665978/1‑140 (MQ=255)

                   tgtgAACTGGAACCTTTCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGcccc                                                                                                                 >  2:1372788/1‑140 (MQ=255)

                         cTGGAACCTTTCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGc                                                                                                           <  1:2103883/140‑1 (MQ=255)

                         atGGAACCTTTCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGc                                                                                                           <  2:1320084/139‑1 (MQ=255)

                             aaCCTTTCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTgg                                                                                                       >  2:287598/1‑140 (MQ=255)

                                  ttCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCaaa                                                                                                  >  2:2291325/1‑140 (MQ=255)

                                  ttCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCaaa                                                                                                  >  1:1674631/1‑140 (MQ=255)

                                  ttCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCaaa                                                                                                  >  2:535270/1‑140 (MQ=255)

                                  ttCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCaaa                                                                                                  >  1:1007967/1‑140 (MQ=255)

                                    cTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGa                                                                                                >  2:1680996/1‑140 (MQ=255)

                                    cTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGa                                                                                                >  1:508470/1‑140 (MQ=255)

                                     tGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGAt                                                                                               <  1:1874363/140‑1 (MQ=255)

                                     tGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGAt                                                                                               <  2:249865/140‑1 (MQ=255)

                                      gAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGAtt                                                                                              >  2:940310/1‑140 (MQ=255)

                                       aaaGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTg                                                                                             <  2:665978/140‑1 (MQ=255)

                                        aaGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTgg                                                                                            <  1:746724/140‑1 (MQ=255)

                                        aaGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTgg                                                                                            <  1:1680996/140‑1 (MQ=255)

                                         aGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGc                                                                                           <  1:1934252/140‑1 (MQ=255)

                                          ggCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCg                                                                                          >  1:1911208/1‑140 (MQ=255)

                                          ggCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCg                                                                                          >  2:1885441/1‑140 (MQ=255)

                                          ggCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCg                                                                                          >  1:1001839/1‑140 (MQ=255)

                                           gCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCgg                                                                                         <  1:1707770/140‑1 (MQ=255)

                                            catcTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGa                                                                                        >  1:61925/4‑140 (MQ=255)

                                            cAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGa                                                                                        <  1:1370942/140‑1 (MQ=255)

                                              aCTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTGCACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAat                                                                                      <  1:513088/140‑1 (MQ=255)

                                              aCTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAat                                                                                      <  2:109567/140‑1 (MQ=255)

                                              aCTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAat                                                                                      <  2:942898/140‑1 (MQ=255)

                                              aCTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAat                                                                                      >  1:522108/1‑140 (MQ=255)

                                              aCTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAat                                                                                      <  1:1372788/140‑1 (MQ=255)

                                                   gtgACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATccc                                                                                 <  1:2149460/140‑1 (MQ=255)

                                                      aCCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCgt                                                                              >  2:1934052/1‑139 (MQ=255)

                                                         tttAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTAc                                                                           >  1:1446795/1‑140 (MQ=255)

                                                          ttAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACt                                                                          >  1:161935/1‑140 (MQ=255)

                                                          ttAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACt                                                                          >  2:830486/1‑140 (MQ=255)

                                                          ttAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGATACt                                                                          >  1:2121251/1‑140 (MQ=255)

                                                             aGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGcc                                                                       <  2:508470/140‑1 (MQ=255)

                                                             aGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGcc                                                                       <  2:1768414/140‑1 (MQ=255)

                                                             aGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGcc                                                                       <  1:202482/140‑1 (MQ=255)

                                                                tCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCgag                                                                    <  1:2394299/140‑1 (MQ=255)

                                                                 cGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCgaga                                                                   <  1:1818196/140‑1 (MQ=255)

                                                                  ggCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGAt                                                                  >  2:272920/1‑140 (MQ=255)

                                                                  ggCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGAt                                                                  >  1:1945049/1‑140 (MQ=255)

                                                                  ggCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAACCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGAt                                                                  >  2:715114/1‑140 (MQ=255)

                                                                   gCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATc                                                                 >  2:1343631/1‑140 (MQ=255)

                                                                     tACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCaa                                                               <  2:1707884/140‑1 (MQ=255)

                                                                                  gggCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGtt                                                  >  1:1641886/1‑140 (MQ=255)

                                                                                     cTGTTTTCTGCCACCAGAATCTCTTCAGCTTTGGGCTTCGGTGGCTCGACACCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTaa                                               <  2:2191385/140‑1 (MQ=255)

                                                                                     cTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTaa                                               <  2:1007967/140‑1 (MQ=255)

                                                                                     cTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTaa                                               <  1:1581940/140‑1 (MQ=255)

                                                                                      tGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGATACTGCCGAGATCAATACTGCCAACGTTTAAc                                              <  2:2121251/140‑1 (MQ=255)

                                                                                       tttttCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCGCGACTCCCACGTACTCCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACg                                             <  2:2439343/139‑1 (MQ=255)

                                                                                        ttttCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGc                                            >  1:22227/1‑140 (MQ=255)

                                                                                         tttCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCt                                           >  2:1134713/1‑140 (MQ=255)

                                                                                         tttCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCt                                           >  2:2413180/1‑140 (MQ=255)

                                                                                             tGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCa                                       <  2:2138008/140‑1 (MQ=255)

                                                                                             tGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCa                                       >  2:2316074/1‑140 (MQ=255)

                                                                                                  ccaGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACAtt                                  >  2:937016/1‑140 (MQ=255)

                                                                                                  ccaGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACAtt                                  >  1:2170298/1‑140 (MQ=255)

                                                                                                      aaTCACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCg                              >  2:594899/1‑140 (MQ=255)

                                                                                                         cACTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCGGAc                           >  1:1367305/1‑140 (MQ=255)

                                                                                                           cTTCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCGGAccc                         >  2:1433074/1‑140 (MQ=255)

                                                                                                            ttCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCGGACCcg                        >  1:2015577/1‑140 (MQ=255)

                                                                                                            ttCGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCGGACCcg                        >  2:903209/1‑140 (MQ=255)

                                                                                                              cGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCGGACCcgcg                      <  1:1283266/140‑1 (MQ=255)

                                                                                                              cGGCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACNGCCGAGATCAATACTGCCAANGTNTAACGCTTCCAACATTTGCGGACCcgcg                      <  1:728092/140‑1 (MQ=255)

                                                                                                                gCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCGGACCCGCggg                    <  1:830486/140‑1 (MQ=255)

                                                                                                                gCTTTGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCGGACCCGCggg                    >  1:2236766/1‑140 (MQ=255)

                                                                                                                   ttGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCGGACCCGCGGGGaa                 <  1:287598/140‑1 (MQ=255)

                                                                                                                   ttGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCGGACCCGCGGGGaa                 <  1:1440914/140‑1 (MQ=255)

                                                                                                                   ttGGGCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCGGACCCGCGGGGaa                 <  2:1674631/140‑1 (MQ=255)

                                                                                                                     gggCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCGGACCCGCGGGGAACt               <  2:1469700/140‑1 (MQ=255)

                                                                                                                     gggCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCGGACCCGCGGGGAACt               <  1:606508/140‑1 (MQ=255)

                                                                                                                     gggCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCGGACCCGCGGGGAACt               <  1:1018349/140‑1 (MQ=255)

                                                                                                                      ggCTTCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCGGACCCGCGGGGAACTc              <  2:717800/140‑1 (MQ=255)

                                                                                                                          tCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCGGACCCGCGGGGAACTCCAcc          <  2:161935/140‑1 (MQ=255)

                                                                                                                          tCGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCGGACCCGCGGGGAACTCCAcc          >  2:776416/1‑140 (MQ=255)

                                                                                                                           cGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGTCAACGTTTAACGCTTCCAACATTTGCGGACCCGCGGGGAACTCCAccc         >  2:908449/1‑140 (MQ=255)

                                                                                                                           cGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCGGACCCGCGGGGAACTCCAccc         >  2:1640277/1‑140 (MQ=255)

                                                                                                                           cGGTGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCGGACCCGCGGGGAACTCCAccc         >  1:816737/1‑140 (MQ=255)

                                                                                                                              tGGCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCGGACCCGCGGGGAACTCCACCCAgg      <  1:2527258/140‑1 (MQ=255)

                                                                                                                                gCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCGGACCCGCGGGGAACTCCACCCAGgag    >  1:1363364/1‑140 (MQ=255)

                                                                                                                                gCTCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCGGACCCGCGGGGAACTCCACCCAGgag    <  2:1010999/140‑1 (MQ=255)

                                                                                                                                  tCGACTCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCGGACCCGCGGGGAACTCCACCCAGGAGAt  >  2:2317973/1‑140 (MQ=255)

TGCACGCAGTAAAAGGTTGTGTGAACTGGAACCTTTCTGAAAGGCAACTTTGTGACCTTTAAGATCGGCTACGGTTTTGATCGGGCTGTTTTCTGCCACCAGAATCACTTCGGCTTTGGGCTTCGGTGGCTCGACGCCCACGTACACCAAATCAGCCCCGGCAGCCTGGGCAAAGATTGGCGGAATATCCCCGGTACTGCCGAGATCAATACTGCCAACGTTTAACGCTTCCAACATTTGCGGACCCGCGGGGAACTCCACCCAGGAGAT  >  NC_000913/996504‑996773

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A