Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F48 I1 R1	66	101.5	3442112	98.9%	3404248	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	395,771	G→T	L173M (CTG→ATG)	ampH ←	peptidoglycan DD‑carboxypeptidase/peptidoglycan DD‑endopeptidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	395,771	0	G	T	100.0%	341.5 / NA	97	L173M (CTG→ATG)	ampH	peptidoglycan DD‑carboxypeptidase/peptidoglycan DD‑endopeptidase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (49/48); total (49/48)

CATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTC  >  NC_000913/395637‑395907

cATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCg                                                                                                                                     <  1:1540098/140‑1 (MQ=255)

cATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCg                                                                                                                                     >  2:423056/1‑140 (MQ=255)

  tCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGcc                                                                                                                                   >  2:217613/1‑140 (MQ=255)

       aaTGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGa                                                                                                                              <  2:1408797/140‑1 (MQ=255)

       aaTGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGa                                                                                                                              <  1:488795/140‑1 (MQ=255)

         tGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGaaa                                                                                                                            <  1:828300/140‑1 (MQ=255)

         tGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGaaa                                                                                                                            <  1:706500/140‑1 (MQ=255)

          ggACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAg                                                                                                                           <  2:489192/140‑1 (MQ=255)

            aCGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGt                                                                                                                         <  1:729973/140‑1 (MQ=255)

                   aTCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCa                                                                                                                  >  1:491388/1‑140 (MQ=255)

                     cTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGc                                                                                                                >  1:598250/1‑140 (MQ=255)

                       gCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGt                                                                                                              <  2:1479947/140‑1 (MQ=255)

                        ctctTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGtt                                                                                                             >  1:1261728/1‑140 (MQ=255)

                         tctTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTg                                                                                                            >  1:145793/1‑140 (MQ=255)

                             cAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGTCGTAGAAAGGTATTTCCAGCGTTGCTcg                                                                                                        >  2:1616215/1‑140 (MQ=255)

                                 caacTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTcgcgcg                                                                                                    <  2:1244487/140‑1 (MQ=255)

                                 caacTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTcgcgcg                                                                                                    <  1:1002047/140‑1 (MQ=255)

                                  aacTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGt                                                                                                   >  2:1494836/1‑140 (MQ=255)

                                     tGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTgg                                                                                                >  1:1463671/1‑140 (MQ=255)

                                      gggTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGc                                                                                               <  1:362614/140‑1 (MQ=255)

                                      gggTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGc                                                                                               <  2:379910/140‑1 (MQ=255)

                                       ggTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGcc                                                                                              >  1:330923/1‑140 (MQ=255)

                                         tataAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAg                                                                                            >  1:736909/1‑140 (MQ=255)

                                            aaGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACa                                                                                         >  1:665676/1‑140 (MQ=255)

                                              ggCTTGCCGGACGCATTCGTCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACaaa                                                                                       >  1:58040/1‑140 (MQ=255)

                                              ggCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACaaa                                                                                       >  2:280232/1‑140 (MQ=255)

                                              ggCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACaaa                                                                                       >  2:57950/1‑140 (MQ=255)

                                                 ttGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAacac                                                                                    >  1:907002/1‑140 (MQ=255)

                                                  tGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACAcc                                                                                   >  2:1184184/1‑140 (MQ=255)

                                                  tGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACAcc                                                                                   <  1:1543718/140‑1 (MQ=255)

                                                   gCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCg                                                                                  >  1:784072/1‑140 (MQ=255)

                                                   gCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCg                                                                                  >  2:1222067/1‑140 (MQ=255)

                                                   gCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCg                                                                                  >  2:432916/1‑140 (MQ=255)

                                                   gCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCg                                                                                  >  2:235993/1‑140 (MQ=255)

                                                   gCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCg                                                                                  >  2:220901/1‑140 (MQ=255)

                                                   gCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCg                                                                                  >  2:1666866/1‑140 (MQ=255)

                                                   gCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCg                                                                                  <  1:372224/140‑1 (MQ=255)

                                                   gCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCg                                                                                  >  1:43802/1‑140 (MQ=255)

                                                     cGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGa                                                                                <  1:409919/140‑1 (MQ=255)

                                                         cGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGAt                                                                            >  1:64920/1‑140 (MQ=255)

                                                              tCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGcc                                                                       >  1:1151615/1‑140 (MQ=255)

                                                                    gTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCa                                                                 <  1:863766/140‑1 (MQ=255)

                                                                    gTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCa                                                                 <  1:280232/140‑1 (MQ=255)

                                                                    gTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCa                                                                 <  1:1616215/140‑1 (MQ=255)

                                                                     tGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCAc                                                                <  2:1151615/140‑1 (MQ=255)

                                                                     tGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCAc                                                                >  1:637513/1‑140 (MQ=255)

                                                                        aTCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCa                                                                 <  1:1103424/136‑1 (MQ=255)

                                                                        aTCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCa                                                                 >  2:1103424/1‑136 (MQ=255)

                                                                         tCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCggg                                                            <  2:330923/140‑1 (MQ=255)

                                                                         tCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCggg                                                            <  1:220901/140‑1 (MQ=255)

                                                                            gCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCtt                                                         >  2:1004726/1‑139 (MQ=255)

                                                                              cagcagGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTGGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGtt                                                       >  2:1562309/1‑140 (MQ=255)

                                                                                gcagGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTGGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCa                                                     <  1:1562309/140‑1 (MQ=255)

                                                                                gcagGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCa                                                     <  1:1092615/140‑1 (MQ=255)

                                                                                 cagGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCAc                                                    >  1:1307984/1‑140 (MQ=255)

                                                                                  agGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACg                                                   <  1:718502/140‑1 (MQ=255)

                                                                                    gTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACggg                                                 >  2:1378257/1‑140 (MQ=255)

                                                                                       gAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCa                                              <  1:217613/140‑1 (MQ=255)

                                                                                       gAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCa                                              <  1:1378257/140‑1 (MQ=255)

                                                                                       gAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCa                                              <  2:43802/140‑1 (MQ=255)

                                                                                           gCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGgc                                          <  2:907002/140‑1 (MQ=255)

                                                                                           gCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGgc                                          <  1:802076/140‑1 (MQ=255)

                                                                                           acAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGgc                                          <  2:665676/139‑1 (MQ=255)

                                                                                            cAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGgcg                                         <  1:1563901/140‑1 (MQ=255)

                                                                                            cAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGgcg                                         <  1:1333441/140‑1 (MQ=255)

                                                                                            aaaGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGACGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACCCCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGgcg                                         <  2:1229571/139‑1 (MQ=255)

                                                                                                        aCGCCGCCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGtt                             >  2:1271560/1‑140 (MQ=255)

                                                                                                         cgccgcCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTg                            >  1:110727/1‑140 (MQ=255)

                                                                                                         cgccgcCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTg                            >  2:188314/1‑140 (MQ=255)

                                                                                                         cgccgcCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTg                            >  1:650927/1‑140 (MQ=255)

                                                                                                         cgccgcCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTg                            >  2:1525606/1‑140 (MQ=255)

                                                                                                         cgccgcCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTg                            >  1:1598656/1‑140 (MQ=255)

                                                                                                         cgccgcCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTg                            >  1:1383059/1‑140 (MQ=255)

                                                                                                         cgccgcCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTg                            <  1:1494836/140‑1 (MQ=255)

                                                                                                         cgccgcCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTg                            >  1:1629458/1‑140 (MQ=255)

                                                                                                         cgccgcCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTg                            >  1:1140472/1‑140 (MQ=255)

                                                                                                         cgccgcCTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGACCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTg                            >  1:870565/1‑140 (MQ=255)

                                                                                                          gccgccTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTa                                   <  1:1048933/132‑1 (MQ=255)

                                                                                                          gccgccTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTa                                   >  2:1048933/1‑132 (MQ=255)

                                                                                                          gccgccTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGc                           >  1:807418/1‑140 (MQ=255)

                                                                                                           ccgccTGACTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGcc                          >  1:1156840/1‑140 (MQ=255)

                                                                                                                  aCTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGa                   <  1:423056/140‑1 (MQ=255)

                                                                                                                   cTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGAc                  <  2:573160/140‑1 (MQ=255)

                                                                                                                   cTGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGAc                  <  2:64920/140‑1 (MQ=255)

                                                                                                                    tGCCTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGACCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGAcc                 <  2:870565/140‑1 (MQ=255)

                                                                                                                      ccTGGCGCGGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAg               >  2:813240/1‑140 (MQ=255)

                                                                                                                           cgcgGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTaa          >  1:534076/1‑140 (MQ=255)

                                                                                                                           cgcgGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTaa          >  2:1649609/1‑140 (MQ=255)

                                                                                                                           cgcgGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTaa          <  2:736909/140‑1 (MQ=255)

                                                                                                                             cgGCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGCCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAAtt        >  2:302109/1‑139 (MQ=255)

                                                                                                                              ggCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATgg       <  2:637513/140‑1 (MQ=255)

                                                                                                                              ggCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATgg       <  2:1307984/140‑1 (MQ=255)

                                                                                                                               gCTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATggg      <  1:1666866/140‑1 (MQ=255)

                                                                                                                                cTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGc     >  2:1250899/1‑140 (MQ=255)

                                                                                                                                cTTTCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGc     <  2:650927/140‑1 (MQ=255)

                                                                                                                                 tttCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCg    <  1:813240/140‑1 (MQ=255)

                                                                                                                                  ttCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGt   <  2:1383059/140‑1 (MQ=255)

                                                                                                                                   tCATCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGGGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTc  <  1:1222067/140‑1 (MQ=255)

CATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTC  >  NC_000913/395637‑395907

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A