Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F48 I1 R1	66	101.5	3442112	98.9%	3404248	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	660,058	C→A	Q53H (CAG→CAT)	lipA ←	lipoyl synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	660,058	0	C	A	100.0%	371.5 / NA	104	Q53H (CAG→CAT)	lipA	lipoyl synthase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (62/42); total (62/42)

Only 100 of 106 total aligned reads displayed.

CAACGGCGGGTACAAATAGCGCCGAGGATCATAAACGTTGCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCCTGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCATCGCGGTATTTAACACCGCG  >  NC_000913/659924‑660192

cAACGGCGGGTACAAATAGCGCCGAGGATCATAAACGTTGCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGAt                                                                                                                                   <  1:1676131/140‑1 (MQ=255)

 aaCGGCGGGTACAAATAGCGCCGAGGATCATAAACGTTGCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATa                                                                                                                                  <  1:1466717/140‑1 (MQ=255)

                tAGCGCCGAGGATCATAAACGTTGCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCt                                                                                                                   <  2:1648291/140‑1 (MQ=255)

                   cgcCGAGGATCATACACGTTGCTGTGCCGTGGCTGCAGCAATCCCCCAGATTAGGGCAGGAGGCTCCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGAATACGTGAAGAGCCCGCTGGa                                                                                                                >  2:225495/1‑140 (MQ=255)

                   cgcCGAGGATCATAAACGTTGCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGa                                                                                                                >  2:942202/1‑140 (MQ=255)

                   cgcCGAGGATCATAAACGTTGCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGa                                                                                                                >  2:169254/1‑140 (MQ=255)

                    gcCGAGGATCATAAACGTTGCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGaa                                                                                                               >  2:1262701/1‑140 (MQ=255)

                         ggATCATAAACGTTGCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCttt                                                                                                          >  2:546774/1‑139 (MQ=255)

                          gATCATAAACGTTGCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGa                                                                                                         >  1:1334745/1‑140 (MQ=255)

                                   cGTTGCTGTGCCGTGGTTGAAGCATTCCGTCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATcc                                                                                                >  2:1630368/1‑140 (MQ=255)

                                    gTTGCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCa                                                                                               >  2:502855/1‑140 (MQ=255)

                                    gTTGCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCa                                                                                               >  2:1656923/1‑140 (MQ=255)

                                    gTTGCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCa                                                                                               >  2:872731/1‑140 (MQ=255)

                                     ttGCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCAt                                                                                              >  2:1046720/1‑140 (MQ=255)

                                     ttGCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCAt                                                                                              >  1:564900/1‑140 (MQ=255)

                                      tGCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCAtt                                                                                             >  1:422946/1‑140 (MQ=255)

                                      tGCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCAtt                                                                                             >  1:357604/1‑140 (MQ=255)

                                       gCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTc                                                                                            >  1:1017853/1‑140 (MQ=255)

                                       gCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTc                                                                                            >  1:1513454/1‑140 (MQ=255)

                                       gCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTc                                                                                            >  1:178133/1‑140 (MQ=255)

                                       gCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTc                                                                                            >  2:102468/1‑140 (MQ=255)

                                       gCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTc                                                                                            >  2:1565121/1‑140 (MQ=255)

                                       gCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTc                                                                                            >  2:611416/1‑140 (MQ=255)

                                       gCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTc                                                                                            >  1:1029769/1‑140 (MQ=255)

                                       gCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTc                                                                                            >  1:1152016/1‑140 (MQ=255)

                                        cTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTcc                                                                                           >  1:363077/1‑140 (MQ=255)

                                              cGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTg                                                                                     <  1:872731/140‑1 (MQ=255)

                                                tGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTgcg                                                                                   >  2:813829/1‑140 (MQ=255)

                                                     gAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCgcagca                                                                              >  1:862161/1‑140 (MQ=255)

                                                     gAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCgcagca                                                                              >  2:1187593/1‑140 (MQ=255)

                                                          aTTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGAATTTCATCCATTCCGGCTTGCGCAGCAGGGCt                                                                         <  1:1114216/140‑1 (MQ=255)

                                                            tCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTc                                                                       >  1:624343/1‑140 (MQ=255)

                                                            tCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTc                                                                       >  1:1056042/1‑140 (MQ=255)

                                                            tCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTc                                                                       >  2:762581/1‑140 (MQ=255)

                                                            tCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTc                                                                       >  1:1494513/1‑140 (MQ=255)

                                                            tCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTc                                                                       >  2:814283/1‑140 (MQ=255)

                                                             ccGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTcg                                                                      <  1:20331/140‑1 (MQ=255)

                                                             ccGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTcg                                                                      <  2:564900/140‑1 (MQ=255)

                                                             ccGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTcg                                                                      >  1:537617/1‑140 (MQ=255)

                                                              cGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTcgc                                                                     <  2:363077/140‑1 (MQ=255)

                                                               gCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTcgcg                                                                    <  1:1116565/140‑1 (MQ=255)

                                                                 cAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGct                                                                  >  2:1301859/1‑140 (MQ=255)

                                                                   ggTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGctct                                                                >  2:100723/1‑140 (MQ=255)

                                                                         ggCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGcc                                                          <  2:1017853/140‑1 (MQ=255)

                                                                         ggCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGcc                                                          >  2:1361081/1‑140 (MQ=255)

                                                                          gCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCa                                                         <  2:178133/140‑1 (MQ=255)

                                                                             ggaggCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGt                                                      >  1:1561323/1‑140 (MQ=255)

                                                                              gaggCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGtt                                                     >  1:1257385/1‑140 (MQ=255)

                                                                              gaggCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGtt                                                     >  2:1447874/1‑140 (MQ=255)

                                                                              gaggCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGtt                                                     >  1:1503114/1‑140 (MQ=255)

                                                                              gaggCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGtt                                                     >  2:117130/1‑140 (MQ=255)

                                                                              gaggCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGtt                                                     >  2:1151322/1‑140 (MQ=255)

                                                                              gaggCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGtt                                                     >  1:1254311/1‑140 (MQ=255)

                                                                              gaggCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGtt                                                     >  1:1255696/1‑140 (MQ=255)

                                                                              gaggCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGtt                                                     >  1:353076/1‑140 (MQ=255)

                                                                              gaggCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGtt                                                     >  1:919518/1‑140 (MQ=255)

                                                                              gaggCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGtt                                                     >  1:38008/1‑140 (MQ=255)

                                                                              gaggCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGtt                                                     >  2:343135/1‑140 (MQ=255)

                                                                              gaggCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGtt                                                     >  2:458772/1‑140 (MQ=255)

                                                                                ggCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGtttt                                                   <  2:537617/140‑1 (MQ=255)

                                                                                   ttCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTaa                                                >  1:1651202/1‑140 (MQ=255)

                                                                                    tCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAAc                                               <  1:287519/140‑1 (MQ=255)

                                                                                    tCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAAc                                               <  1:1046720/140‑1 (MQ=255)

                                                                                    tCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAAc                                               <  1:943120/140‑1 (MQ=255)

                                                                                    tCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAAc                                               <  1:176010/140‑1 (MQ=255)

                                                                                    tCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAAc                                               <  1:112472/140‑1 (MQ=255)

                                                                                        cGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCggg                                           >  2:1233970/1‑140 (MQ=255)

                                                                                          cagacagaATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGACTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGAt                                         <  1:1628429/140‑1 (MQ=255)

                                                                                               agaATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAggg                                    >  1:179232/1‑140 (MQ=255)

                                                                                                gaATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGc                                   <  1:1262701/140‑1 (MQ=255)

                                                                                                 aaTGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGcc                                  >  2:216248/1‑140 (MQ=255)

                                                                                                 aaTGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGcc                                  <  1:611416/140‑1 (MQ=255)

                                                                                                 aaTGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGcc                                  <  2:1320434/140‑1 (MQ=255)

                                                                                                        gCCATTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTAt                           >  2:1304246/1‑140 (MQ=255)

                                                                                                           aTTTTTGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCgg                        >  1:298300/1‑140 (MQ=255)

                                                                                                            tttttGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGc                       >  2:1655176/1‑140 (MQ=255)

                                                                                                             ttttGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCa                      <  1:1151322/140‑1 (MQ=255)

                                                                                                             ttttGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCa                      <  2:357604/140‑1 (MQ=255)

                                                                                                              tttGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCAt                     <  2:298300/140‑1 (MQ=255)

                                                                                                                tGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCATcg                   <  1:1447874/140‑1 (MQ=255)

                                                                                                                tGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCATcg                   <  2:1513454/140‑1 (MQ=255)

                                                                                                                tGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCATcg                   <  1:1233970/140‑1 (MQ=255)

                                                                                                                tGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCATcg                   <  2:1029769/140‑1 (MQ=255)

                                                                                                                tGCGCATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCATcg                   <  2:1651202/140‑1 (MQ=255)

                                                                                                                  cgcATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCATcgcg                 <  2:733791/140‑1 (MQ=255)

                                                                                                                  cgcATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCATcgcg                 <  1:100723/140‑1 (MQ=255)

                                                                                                                  cgcATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCATcgcg                 <  1:156839/140‑1 (MQ=255)

                                                                                                                  cgcATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCATcgcg                 <  1:1361081/140‑1 (MQ=255)

                                                                                                                  cgcATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCATcgcg                 <  2:862161/140‑1 (MQ=255)

                                                                                                                  cgcATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCATcgcg                 <  1:762581/140‑1 (MQ=255)

                                                                                                                  cgcATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCATcgcg                 <  1:813829/140‑1 (MQ=255)

                                                                                                                  cgcATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCATcgcg                 <  2:225600/140‑1 (MQ=255)

                                                                                                                  cgcATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCATcgcg                 <  2:1056042/140‑1 (MQ=255)

                                                                                                                  cgcATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCATcgcg                 <  2:1257385/140‑1 (MQ=255)

                                                                                                                  cgcATTGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCATcgcg                 <  1:1187593/140‑1 (MQ=255)

                                                                                                                       tGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCATCGCGGTAtt            >  1:305818/1‑140 (MQ=255)

                                                                                                                       tGCGGCTTTGATGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCATCGCGGTAtt            >  1:195426/1‑140 (MQ=255)

                                                                                                                                 aTGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCATCGCGGTATTTAACACcgcg  >  2:448466/1‑140 (MQ=255)

                                                                                                                                 aTGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCATCGCGGTATTTAACACcgcg  >  2:332311/1‑140 (MQ=255)

                                                                                                                                 aTGCCATGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCATCGCGGTATTTAACACcgcg  >  1:1162428/1‑140 (MQ=255)

CAACGGCGGGTACAAATAGCGCCGAGGATCATAAACGTTGCTGTGCCGTGGTTGAAGCATTCCGCCAGGTTAGGGCAGGAGGCTTCCTCGCAGACAGAATGCAGGCCATTTTTGCGCATTGCGGCTTTGATGCCCTGGATACGTGTAGAGTCCGCTGGAAGCTTGATTTTCATCCATTCCGGCTTGCGCAGCAGGGCTTCGCGCTCTGTTGCCACGTTTTTAACCGGGATAAGGGCCATCTTATCGGCATCGCGGTATTTAACACCGCG  >  NC_000913/659924‑660192

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A