Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F48 I1 R1	66	101.5	3442112	98.9%	3404248	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	745,017	G→T	A259S (GCC→TCC)	pxpC →	5‑oxoprolinase component C

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	745,017	0	G	T	100.0%	279.6 / NA	79	A259S (GCC→TCC)	pxpC	5‑oxoprolinase component C
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (44/35); total (44/35)

AAATTTTAAAACGCACCACCGATCGCGAACTGTTATCTCACGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTGCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAGGCACTAAAAGCACGGCAAGATCAGCAACGTTATTTTGAACAATTAGCGT  >  NC_000913/744883‑745152

aaaTTTTAAAACGCACCACCGATCGCGAACTGTTATCTCACGGTTTTTTACCGGGCGTGGTGCAGGTGTCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGCCCACCGGTGGTTACCCGCGTATTTCCTGt                                                                                                                                    >  2:609038/1‑140 (MQ=255)

aaaTTTTAAAACGCACCACCGATCGCGAACTGTTATCTCACGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGt                                                                                                                                    >  2:75352/1‑140 (MQ=255)

 aaTTTTAAAACGCACCACCGATCGCGAACTGTTATCTCACGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTa                                                                                                                                   >  2:1003368/1‑140 (MQ=255)

      tAAAACGCGCCACCGATCGCGAACTGTTATCTCACGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCAtt                                                                                                                              <  2:951014/140‑1 (MQ=255)

      tAAAACGCACCACCGATCGCGAACTGTTATCTCACGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCAtt                                                                                                                              >  2:1338707/1‑140 (MQ=255)

       aaaaCGCACCACCGATCGCGAACTGTTATCTCACGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTg                                                                                                                             <  2:186798/140‑1 (MQ=255)

        aaaCGCACCACCGATCGCGAACTGTTATCTCACGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGa                                                                                                                            >  1:246880/1‑140 (MQ=255)

        aaaCGCACCACCGATCGCGAACTGTTATCTCACGGTTTGTTACCGGGCGAGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGa                                                                                                                            <  1:1367772/140‑1 (MQ=255)

          aCGCACCACCGATCGCGAACTGTTATCTCACGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAgg                                                                                                                          <  2:117352/140‑1 (MQ=255)

          aCGCACCACCGATCGCGAACTGTTATCTCACGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAgg                                                                                                                          <  1:115680/140‑1 (MQ=255)

            gCACCACCGATCGCGAACTGTTATCTCACGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCt                                                                                                                        <  2:66998/140‑1 (MQ=255)

             caccagCGATCGCGAACTGTTATCTCACGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCAGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTAGCCGCGTATTTCCTGTATCATTGAGGCTg                                                                                                                       <  2:1209111/140‑1 (MQ=255)

             caccacCGATCGCGAACTGTTATCTCACGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTg                                                                                                                       <  1:1338707/140‑1 (MQ=255)

              accaccGATCGCGAACTGTTATCTCACGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTgt                                                                                                                      >  2:702821/1‑139 (MQ=255)

              accaccGATCGCGAACTGTTATCTCACGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGa                                                                                                                      <  1:1003368/140‑1 (MQ=255)

              accaccGATCGCGAACTGTTATCTCACGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGa                                                                                                                      >  2:528763/1‑140 (MQ=255)

               ccaccGATCGCGAACTGTTATCTCACGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGat                                                                                                                     <  2:1576216/140‑1 (MQ=255)

               ccaccGATCGCGAACTGTTATCTCACGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGat                                                                                                                     <  2:1719707/140‑1 (MQ=255)

                       cgcgAACTGTTATCTCACGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCa                                                                                                             >  2:1654372/1‑140 (MQ=255)

                            aCTGTTATCTCACGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTgg                                                                                                        >  2:586144/1‑140 (MQ=255)

                                ttATCTCACGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCa                                                                                                    >  1:35247/1‑140 (MQ=255)

                                 tATCTCACGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCaa                                                                                                   >  2:300228/1‑140 (MQ=255)

                                        cGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTTCgt                                                                                            >  2:894740/1‑139 (MQ=255)

                                        cGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGc                                                                                            >  2:1545567/1‑140 (MQ=255)

                                        cGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGc                                                                                            >  2:1712350/1‑140 (MQ=255)

                                        cGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGc                                                                                            >  1:989384/1‑140 (MQ=255)

                                        cGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGc                                                                                            >  2:1066508/1‑140 (MQ=255)

                                        cGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGc                                                                                            >  1:1566593/1‑140 (MQ=255)

                                          gTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTc                                                                                          >  1:1047320/1‑140 (MQ=255)

                                          gTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTc                                                                                          >  2:1226777/1‑140 (MQ=255)

                                          gTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTc                                                                                          >  1:1281559/1‑140 (MQ=255)

                                          gTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCACCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTc                                                                                          >  1:197257/1‑140 (MQ=255)

                                             tGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGt                                                                                       >  1:628090/1‑140 (MQ=255)

                                             tGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGt                                                                                       >  2:657783/1‑140 (MQ=255)

                                              gTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTc                                                                                      >  1:586987/1‑140 (MQ=255)

                                                     ggCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGAt                                                                               <  1:657783/140‑1 (MQ=255)

                                                     ggCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGAt                                                                               <  1:528763/140‑1 (MQ=255)

                                                     ggCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGAt                                                                               >  1:523900/1‑140 (MQ=255)

                                                       cGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTc                                                                             >  1:1000457/1‑140 (MQ=255)

                                                         tggtgCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCAt                                                                           >  1:425689/1‑140 (MQ=255)

                                                          ggtgCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCAtt                                                                          <  2:197257/140‑1 (MQ=255)

                                                           gtgCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCAttt                                                                         >  2:620160/1‑140 (MQ=255)

                                                           gtgCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCAttt                                                                         >  2:1191645/1‑140 (MQ=255)

                                                            tgCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCAtttt                                                                        <  2:981338/140‑1 (MQ=255)

                                                            tgCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCAtttt                                                                        >  1:1186819/1‑140 (MQ=255)

                                                              cAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGt                                                                      <  2:801195/140‑1 (MQ=255)

                                                               aGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTc                                                                     <  2:425689/140‑1 (MQ=255)

                                                               aGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTc                                                                     <  2:1047320/140‑1 (MQ=255)

                                                                 gTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCa                                                                   <  2:586987/140‑1 (MQ=255)

                                                                  tGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAg                                                                  >  2:1442663/1‑140 (MQ=255)

                                                                    ccACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAgtt                                                                >  2:1338167/1‑139 (MQ=255)

                                                                     cacaTAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAgtgt                                                               >  2:11112/1‑140 (MQ=255)

                                                                      acaTAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGtt                                                              >  1:1044254/1‑140 (MQ=255)

                                                                      acaTAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGtt                                                              <  2:801369/140‑1 (MQ=255)

                                                                      acaTAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGtt                                                              <  2:1000457/140‑1 (MQ=255)

                                                                        aTAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCa                                                            <  1:620160/140‑1 (MQ=255)

                                                                        aTAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCa                                                            <  1:1191645/140‑1 (MQ=255)

                                                                            cGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTgg                                                        >  1:39513/1‑140 (MQ=255)

                                                                                 aGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAagag                                                   <  2:1281559/140‑1 (MQ=255)

                                                                                  gCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAgg                                                  >  2:1064265/1‑140 (MQ=255)

                                                                                  gCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAgg                                                  <  1:1712350/140‑1 (MQ=255)

                                                                                           gtTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAGGCACTAAAAg                                         <  2:989384/140‑1 (MQ=255)

                                                                                           gtTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAGGCACTAAAAg                                         <  1:622670/140‑1 (MQ=255)

                                                                                            ttGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAGGCACTAAAAGc                                        <  2:1186819/140‑1 (MQ=255)

                                                                                                tgaACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAGGCACTAAAAGCACgg                                    <  2:628090/140‑1 (MQ=255)

                                                                                                 gaACGACGCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAGGCACTAAAAGCACGGc                                   <  2:523900/140‑1 (MQ=255)

                                                                                                   acgacgCACAGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAGGCACTAAAAGCACGGCaa                                 <  2:35247/140‑1 (MQ=255)

                                                                                                         cacaGACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAGGCACTAAAAGCACGGCAAGATCAg                           <  1:300228/140‑1 (MQ=255)

                                                                                                             gACCACCGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAGGCACTAAAAGCACGGCAAGATCAGCAAc                       >  1:1054477/1‑140 (MQ=255)

                                                                                                                 accGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAGGCACTAAAAGCACGGCAAGATCAGCAACGTTa                   >  2:1711013/1‑140 (MQ=255)

                                                                                                                 accGGTGGTTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAGGCACTAAAAGCACGGCAAGATCAGCAACGTTa                   >  2:1657930/1‑140 (MQ=255)

                                                                                                                    ggtggtTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAGGCACTAAAAGCACGGCAAGATCAGCAACGTTAttt                <  1:702821/140‑1 (MQ=255)

                                                                                                                        gtTACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAGGCACTAAAAGCACGGCAAGATCAGCAACGTTATTTTGaa            >  2:50789/1‑140 (MQ=255)

                                                                                                                          tACCCGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAGGCACTAAAAGCACGGCAAGATCAGCAACGTTATTTTGAACa          >  1:1267599/1‑140 (MQ=255)

                                                                                                                            cccGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAGGCACTAAAAGCACGGCAAGATCAGCAACGTTATTTTGAACAAt        >  1:1181111/1‑140 (MQ=255)

                                                                                                                            cccGCGTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAGGCACTAAAAGCACGGCAAGATCAGCAACGTTATTTTGAACAAt        <  1:1064265/140‑1 (MQ=255)

                                                                                                                             ccGCGTATTTCCTGTATCATTGAGGCTGTTATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAGGCACTAAAAGCACGGCAAGATCAGCAACGTTATTTTGAACAAtt       >  2:935972/1‑140 (MQ=255)

                                                                                                                                cgTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAGGCACTAAAAGCACGGCAAGATCAGCAACGTTATTTTGAACAATTAGc    >  2:1203855/1‑140 (MQ=255)

                                                                                                                                cgTATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAGGCACTAAAAGCACGGCAAGATCAGCAACGTTATTTTGAACAATTAGc    >  2:547940/1‑140 (MQ=255)

                                                                                                                                  tATTTCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAGGCACTAAAAGCACGGCAAGATCAGCAACGTTATTTTGAACAATTAGCGt  <  1:1442663/140‑1 (MQ=255)

AAATTTTAAAACGCACCACCGATCGCGAACTGTTATCTCACGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGGCAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTGCCTGTATCATTGAGGCTGATATGTACCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAGGCACTAAAAGCACGGCAAGATCAGCAACGTTATTTTGAACAATTAGCGT  >  NC_000913/744883‑745152

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A