Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 747,861 G→T intergenic (‑92/+60) abrB ← / ← ybgO putative regulator/putative fimbrial protein YbgO

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913747,8610GT100.0% 563.4 / NA 163intergenic (‑92/+60)abrB/ybgOputative regulator/putative fimbrial protein YbgO
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (81/82);  total (81/82)

Only 100 of 167 total aligned reads displayed.

GTGATAGCACACATAACATTCCCCACTGCAAAACTGGCATCCTTCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGGAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAA  >  NC_000913/747730‑747997
                                                                                                                                   |                                                                                                                                        
gTGATAGCACACATAACATTCCCCACTGCAAAACTGGCATCCTTCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAg                                                                                                                                  >  1:2093075/1‑140 (MQ=255)
 tGATAGCACACATAACATTCCCCACTGCAAAACTGGCATCCTTCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGc                                                                                                                                 >  2:1840606/1‑140 (MQ=255)
   aTAGCACACATAACATTCCCCACTGCAAAACTGGCATCCTTCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCaa                                                                                                                               <  2:1305921/140‑1 (MQ=255)
   aTAACACACATAACATCCCACACTGCAAAACTGGCATCCTGAGATCCCTCACTGTTTTAATTTAGGTGTATGAATACAGCATAAAGAAGACTGGACCAGGAAAAAATAACAGCAAGCTAGGAAAAGGGGAACATCAGCag                                                                                                                               <  2:1367815/140‑2 (MQ=255)
         cacaTAACATTCCCCACTGCAAAACTGGCATCCTTCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCt                                                                                                                         >  1:1983636/1‑140 (MQ=255)
           aaTAACATTCCCCACTGCAAAACTGGCATCCTTCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGa                                                                                                                       <  2:156645/139‑1 (MQ=255)
            aTAACATTCCCCACTGCAAAACTGGCATCCTTCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGaa                                                                                                                      >  1:1699036/1‑140 (MQ=255)
             tAACATTCCCCACTGCAAAACTGGCATCCTTCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGaaa                                                                                                                     >  2:1649196/1‑140 (MQ=255)
                   tCCCCACTGCAAAACTGGCCTCCTTCGCTCCCTCATTATTTTCTCTTTGGCGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATg                                                                                                               >  1:1361489/1‑140 (MQ=255)
                    ccccACTGCAAAACTGGCATCCTTCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGc                                                                                                              >  1:642120/1‑140 (MQ=255)
                     cccACTGCAAAACTGGCATCCTTCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGcc                                                                                                             >  1:386124/1‑140 (MQ=255)
                      ccACTGCAAAACTGGCATCCTTCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGccc                                                                                                            <  2:1983636/140‑1 (MQ=255)
                      ccACTGCAAAACTGGCATCCTTCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGccc                                                                                                            >  1:715157/1‑140 (MQ=255)
                        aCTGCAAAACTGGCATCCTTCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCtt                                                                                                          >  2:1844982/1‑140 (MQ=255)
                        aCTGCAAAACTGGCATCCTTCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCtt                                                                                                          >  2:1036454/1‑140 (MQ=255)
                        aCTGCAAAACTGGCATCCTTCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCtt                                                                                                          >  2:424682/1‑140 (MQ=255)
                        aCTGCAAAACTGGCATCCTTCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCtt                                                                                                          >  1:1088699/1‑140 (MQ=255)
                         cTGCAAAACTGGCATCCTTCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCttt                                                                                                         >  1:896967/1‑140 (MQ=255)
                          tGCAAAACTGGCATCCTTCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTc                                                                                                        >  2:1028397/1‑140 (MQ=255)
                          tGCAAAACTGGCATCCTTCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTc                                                                                                        >  1:885089/1‑140 (MQ=255)
                             aaaaCTGGCATCCTTCGCTCCGTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCcgg                                                                                                     <  1:683300/140‑1 (MQ=255)
                                    gCATCCTTCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCaaa                                                                                              >  1:940303/1‑140 (MQ=255)
                                        ccTTCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGc                                                                                          <  1:2057000/140‑1 (MQ=255)
                                         cTTCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGca                                                                                         >  1:1514350/1‑140 (MQ=255)
                                          ttCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGcat                                                                                        <  1:1028397/140‑1 (MQ=255)
                                          ttCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGcat                                                                                        <  1:1562130/140‑1 (MQ=255)
                                           tCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGATAAAATAACAGCAATCAAGCAATAGTGTAAACTCAGCAATTTTCTGAAAGAGATGCACTTTCCGGCGGCAAAGGTcatc                                                                                       >  2:1926843/1‑140 (MQ=255)
                                            cGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGcatca                                                                                      <  2:885089/140‑1 (MQ=255)
                                             gCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGcatcat                                                                                     <  1:1840606/140‑1 (MQ=255)
                                                 ccTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTa                                                                                 >  1:347412/1‑140 (MQ=255)
                                                   tCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTaaa                                                                               >  2:1823474/1‑140 (MQ=255)
                                                   tCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTaaa                                                                               <  2:244180/140‑1 (MQ=255)
                                                   tCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTaaa                                                                               >  2:296037/1‑140 (MQ=255)
                                                   tCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTaaa                                                                               <  2:1109771/140‑1 (MQ=255)
                                                   tCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTaaa                                                                               <  1:1244583/140‑1 (MQ=255)
                                                   tCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTaaa                                                                               >  1:1152866/1‑140 (MQ=255)
                                                    cATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAAt                                                                              <  2:334382/140‑1 (MQ=255)
                                                    cATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAAt                                                                              <  1:1809749/140‑1 (MQ=255)
                                                    cATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAAt                                                                              >  2:478883/1‑140 (MQ=255)
                                                    cATTATTGTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATATTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAAt                                                                              <  1:1926843/140‑1 (MQ=255)
                                                           ttCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTtat                                                                       >  1:1533595/1‑140 (MQ=255)
                                                              tctTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGt                                                                    <  2:940303/140‑1 (MQ=255)
                                                              tcgttGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGt                                                                    <  2:1401870/137‑1 (MQ=255)
                                                               ctTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGtt                                                                   >  1:1172309/1‑140 (MQ=255)
                                                               ctTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGtt                                                                   >  2:1459475/1‑140 (MQ=255)
                                                                tttGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTa                                                                  <  2:1711896/140‑1 (MQ=255)
                                                                      gtATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTa                                                            <  2:741624/140‑1 (MQ=255)
                                                                        aTCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGt                                                                    >  2:2045229/1‑130 (MQ=255)
                                                                        aTCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGt                                                                    <  1:2045229/130‑1 (MQ=255)
                                                                        aTCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTaaa                                                          >  1:848681/1‑140 (MQ=255)
                                                                          cGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTaaaaa                                                        >  1:1211546/1‑140 (MQ=255)
                                                                          cGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTaaaaa                                                        >  1:1633224/1‑140 (MQ=255)
                                                                          cGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTaaaaa                                                        >  2:1864428/1‑140 (MQ=255)
                                                                           gATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAg                                                       <  1:1833237/140‑1 (MQ=255)
                                                                            aTACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGc                                                      >  2:2060070/1‑140 (MQ=255)
                                                                             tACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGca                                                     <  1:1453552/140‑1 (MQ=255)
                                                                             tACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGca                                                     <  1:296037/140‑1 (MQ=255)
                                                                             tACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGca                                                     <  1:425680/140‑1 (MQ=255)
                                                                             tACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAACCAGTTATAGTTAATCTTAAAAAGca                                                     <  1:1649196/140‑1 (MQ=255)
                                                                              aCAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGcac                                                    >  2:117398/1‑140 (MQ=255)
                                                                              aCAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGcac                                                    <  2:1038208/140‑1 (MQ=255)
                                                                              aCAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGcac                                                    <  2:1658718/140‑1 (MQ=255)
                                                                              aCAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGcac                                                    <  2:896967/140‑1 (MQ=255)
                                                                               cAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGcacc                                                   >  2:557692/1‑140 (MQ=255)
                                                                               cAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGcacc                                                   >  1:1052142/1‑140 (MQ=255)
                                                                                aGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGcacca                                                  <  2:347412/140‑1 (MQ=255)
                                                                                  cATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAGAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACt                                                >  2:1240776/1‑140 (MQ=255)
                                                                                  cATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACt                                                >  2:2068640/1‑140 (MQ=255)
                                                                                  cATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACt                                                >  1:1306702/1‑140 (MQ=255)
                                                                                   aTAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACtt                                               >  2:620310/1‑139 (MQ=255)
                                                                                   aTAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTg                                               >  1:2149277/1‑140 (MQ=255)
                                                                                   aTAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTg                                               >  1:1006178/1‑140 (MQ=255)
                                                                                     aaagaaagCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTa                                             <  2:1162767/140‑1 (MQ=255)
                                                                                       agaaagCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGcac                                                    >  2:213095/1‑131 (MQ=255)
                                                                                       agaaagCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATc                                           >  2:873047/1‑140 (MQ=255)
                                                                                          aagCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGaa                                        <  2:1892501/140‑1 (MQ=255)
                                                                                          aagCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGaa                                        <  2:715157/140‑1 (MQ=255)
                                                                                           agCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAg                                       >  1:1912468/1‑140 (MQ=255)
                                                                                           agCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGAGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAg                                       >  2:1008554/1‑140 (MQ=255)
                                                                                            gCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAgg                                      >  1:2018036/1‑140 (MQ=255)
                                                                                            gCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAgg                                      >  1:1561744/1‑140 (MQ=255)
                                                                                            gCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAgg                                      >  2:1920483/1‑140 (MQ=255)
                                                                                              tGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAgggg                                    <  2:1783406/140‑1 (MQ=255)
                                                                                              tGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAgggg                                    <  2:1306702/140‑1 (MQ=255)
                                                                                               gggCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAGGGGc                                   <  2:1006178/140‑1 (MQ=255)
                                                                                                ggCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAGGGGcc                                  >  2:240410/1‑140 (MQ=255)
                                                                                                ggCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAGGGGcc                                  >  1:1922017/1‑140 (MQ=255)
                                                                                                ggCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAGGGGcc                                  >  2:1802387/1‑140 (MQ=255)
                                                                                                   cAGGAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAGGGGCCAGc                               <  1:1320012/140‑1 (MQ=255)
                                                                                                    aGGAAAAAATAACAGCAATCAAGGAAAAAGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCCCTGTATCGAAGGCGCCAGcc                              <  2:2018036/140‑1 (MQ=255)
                                                                                                     ggAAAAAATAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAGGGGCCAGCCt                             <  2:1633224/140‑1 (MQ=255)
                                                                                                       aaaaaaTAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAGGGGCCAGCCTCg                           <  1:478883/140‑1 (MQ=255)
                                                                                                             tAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAGGGGCCAGCCTCGATgggg                     <  1:1864428/140‑1 (MQ=255)
                                                                                                             tAACAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAGGGGCCAGCCTCGATgggg                     <  2:1582899/140‑1 (MQ=255)
                                                                                                             aaaCAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAGGGGCCAGCCTCGATgggg                     <  2:761414/139‑1 (MQ=255)
                                                                                                                cAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAGGGGCCAGCCTCGATGGGGGTg                  >  2:47137/1‑140 (MQ=255)
                                                                                                                cAGCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAGGGGCCAGCCTCGATGGGGGTg                  >  2:1344093/1‑140 (MQ=255)
                                                                                                                  gCAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAGGGGCCAGCCTCGATGGGGGTGcc                <  1:151893/140‑1 (MQ=255)
                                                                                                                  acAATCAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAGGGGCCAGCCTCGATGGGGGTGcc                <  2:860684/139‑1 (MQ=255)
                                                                                                                      acAAGGAAAAGGGTAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGa            <  2:642120/139‑1 (MQ=255)
                                                                                                                                   |                                                                                                                                        
GTGATAGCACACATAACATTCCCCACTGCAAAACTGGCATCCTTCGCTCCCTCATTATTTTCTCTTTGGTGTATCGATACAGCATAAAGAAAGCTGGGCCAGGAAAAAATAACAGCAATCAAGGAAAAGGGGAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAA  >  NC_000913/747730‑747997

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A