Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A19 F48 I1 R1	83	81.6	2760494	99.1%	2735649	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	453,992	G→T	A59E (GCA→GAA)	yajG ←	putative lipoprotein YajG

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	453,992	0	G	T	100.0%	228.7 / NA	64	A59E (GCA→GAA)	yajG	putative lipoprotein YajG
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (24/40); total (24/40)

TGCAGATTAACCGGGCCATTCGGACCAACCATGTAACCACGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTGCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCAGTGTAATCGTCGGGGAAACTTCAATAGTTGTTGGCGGTTTTGCGCATCCTGCAAGCAT  >  NC_000913/453857‑454128

tGCAGATTAACCGGGCCATTCGGACCAACCATGTAACCACGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAg                                                                                                                                      <  1:711782/140‑1 (MQ=255)

tGCAGATTAACCGGGCCATTCGGACCAACCATGTAACCACGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAg                                                                                                                                      <  1:145785/140‑1 (MQ=255)

   aGATTAACCGGGCCATTCGGACCAACCATGTAACCACGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAgcgc                                                                                                                                   <  1:78292/140‑1 (MQ=255)

   aGATTAACCGGGCCATTCGGACCAACCATGTAACCACGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAgcgc                                                                                                                                   >  2:571833/1‑140 (MQ=255)

     aTTAACCGGGCCATTCGGACCAACCATGTAACCACGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCt                                                                                                                                 <  2:982381/140‑1 (MQ=255)

     aTTAACCGGGCCATTCGGACCAACCATGTAACCACGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCt                                                                                                                                 <  2:774692/140‑1 (MQ=255)

     aTTAACCGGGCCATTCGGACCAACCATGTAACCACGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCt                                                                                                                                 <  2:850387/140‑1 (MQ=255)

        aaCCGGGCCATTCGGACCAACCATGTAACCACGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGAt                                                                                                                              <  1:1163557/140‑1 (MQ=255)

             ggCCATTCGGACCAACCATGTAACCACGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGTGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTa                                                                                                                         <  1:73906/140‑1 (MQ=255)

             ggCCATTCGGACCAACCATGTAACCACGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTa                                                                                                                         <  1:218444/140‑1 (MQ=255)

               ccATTCGGACCAACCATGTAACCACGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACg                                                                                                                       <  1:1190092/140‑1 (MQ=255)

               ccATTCGGACCAACCATGTAACCACGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACg                                                                                                                       >  2:821087/1‑140 (MQ=255)

               ccATTCGGACCAACCATGTAACCACGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACg                                                                                                                       <  2:816271/140‑1 (MQ=255)

                       accaaccaTGTAACCACGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCgg                                                                                                               <  1:954594/140‑1 (MQ=255)

                              aTGTAACCACGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGGTTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCAtt                                                                                                        <  1:322697/140‑1 (MQ=255)

                              aTGTAACCACGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCAtt                                                                                                        <  1:59938/140‑1 (MQ=255)

                               tGTAACCACGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTa                                                                                                       <  1:1326171/140‑1 (MQ=255)

                               tGTAACCACGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTa                                                                                                       <  2:1226417/140‑1 (MQ=255)

                                 tAACCACGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAAt                                                                                                     <  1:577105/140‑1 (MQ=255)

                                 tAACCACGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCAGCACCATTAAt                                                                                                     >  2:680136/1‑140 (MQ=255)

                                    ccACGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCt                                                                                                  >  1:340213/1‑140 (MQ=255)

                                      aCGCGCGGTCATCTGTTTTTCCAGCACTTCTTGTAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGGTCGGAACCATTAATGCTTa                                                                                                >  2:295401/1‑140 (MQ=255)

                                      aCGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTa                                                                                                >  1:472542/1‑140 (MQ=255)

                                      aCGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTa                                                                                                >  1:223883/1‑140 (MQ=255)

                                       cgcgcgGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCGCCATTAATGCTTAc                                                                                               >  2:632392/1‑140 (MQ=255)

                                          gcgGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGt                                                                                            >  2:709232/1‑140 (MQ=255)

                                             gTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGAc                                                                                         <  2:1346624/140‑1 (MQ=255)

                                                   tGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCAt                                                                                   <  1:802514/140‑1 (MQ=255)

                                                   tGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCAt                                                                                   <  1:1079418/140‑1 (MQ=255)

                                                   tGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCAt                                                                                   <  2:63122/140‑1 (MQ=255)

                                                   tGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCAt                                                                                   <  1:693463/140‑1 (MQ=255)

                                                   tGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCAt                                                                                   <  1:1160815/140‑1 (MQ=255)

                                                   tGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCAt                                                                                   <  1:1252635/140‑1 (MQ=255)

                                                   tGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCAt                                                                                   <  1:241376/140‑1 (MQ=255)

                                                   tGTTTTCCCAGCACTTCTTGCAGCAGGGAACGTTGATCGCGGGAGGCGGTCAGGGTAACGATTTGAATATCGCGGGTGCCTTTTTGCAGGGCCTGATCGGTAAGCTGATCGGGGCCATTAATGCTTACGGTGGCGCCCAt                                                                                   <  2:471335/140‑1 (MQ=255)

                                                        ttCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGc                                                                              <  1:806593/140‑1 (MQ=255)

                                                        ttCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGc                                                                              >  1:504576/1‑140 (MQ=255)

                                                          ccAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCtt                                                                            >  1:902264/1‑140 (MQ=255)

                                                              cACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGAt                                                                        <  2:687830/140‑1 (MQ=255)

                                                                  tcttGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCctg                                                                    <  2:472542/140‑1 (MQ=255)

                                                                  tcttGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCctg                                                                    <  1:571833/140‑1 (MQ=255)

                                                                   cttGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCctgc                                                                   >  1:1127697/1‑140 (MQ=255)

                                                                        agcagGAAACTCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTgg                                                              <  1:74416/140‑1 (MQ=255)

                                                                          cagGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCa                                                            >  1:5312/1‑140 (MQ=255)

                                                                           agGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGctt                                                           >  2:764054/1‑138 (MQ=255)

                                                                           agGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCAg                                                           >  2:1345302/1‑140 (MQ=255)

                                                                             gAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCAgtg                                                         >  1:777445/1‑140 (MQ=255)

                                                                               aaCGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCAGTGTa                                                       >  1:14804/1‑140 (MQ=255)

                                                                                aCGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCGCCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCAGTGTaa                                                      <  1:632392/140‑1 (MQ=255)

                                                                                     aaTCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCAGTGTAAtcgtc                                                 <  2:383477/139‑1 (MQ=255)

                                                                                       tCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCAGTGTAATCGTCgg                                               >  1:777072/1‑140 (MQ=255)

                                                                                          cgGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCAGTGTAATCGTCGGGGa                                            <  2:113389/140‑1 (MQ=255)

                                                                                                gCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCAGTGTAATCGTCGGGGAAACTTc                                      >  1:1110089/1‑140 (MQ=255)

                                                                                                   gTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCAGTGTAATCGTCGGGGAAACTTCAAt                                   >  1:539273/1‑140 (MQ=255)

                                                                                                     cAGGGTAACGATTTGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCAGTGTAATCGTCGGGGAAACTTCAATAg                                 <  1:295401/140‑1 (MQ=255)

                                                                                                                  tGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCAGTGTAATCGTCGGGGAAACTTCAATAGTTGTTGGCGGttt                    >  1:532275/1‑140 (MQ=255)

                                                                                                                  tGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCAGTGTAATCGTCGGGGAAACTTCAATAGTTGTTGGCGGttt                    >  2:132618/1‑140 (MQ=255)

                                                                                                                  tGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCAGTGTAATCGTCGGGGAAACTTCAATAGTTGTTGGCGGttt                    >  2:1062157/1‑140 (MQ=255)

                                                                                                                  tGATTATCGCGGGTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCAGTGTAATCGTCGGGGAAACTTCAATAGTTGTTGGCGGttt                    >  1:910855/1‑140 (MQ=255)

                                                                                                                             ggTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCAGTGTAATCGTCGGGGAAACTTCAATAGTTGTTGGCGGTTTTGCGCATCCTg         <  2:1127697/140‑1 (MQ=255)

                                                                                                                             ggTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCAGTGTAATCGTCGGGGAAACTTCAATAGTTGTTGGCGGTTTTGCGCATCCTg         <  2:764572/140‑1 (MQ=255)

                                                                                                                             ggTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCAGTGTAATCGTCGGGGAAACTTCAATAGTTGTTGGCGGTTTTGCGCATCCTg         <  2:1110089/140‑1 (MQ=255)

                                                                                                                             ggTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCAGTGTAATCGTCGGGGAAACTTCAATAGTTGTTGGCGGTTTTGCGCATCCTg         <  1:651194/140‑1 (MQ=255)

                                                                                                                             ggTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCAGTGTAATCGTCGGGGAAACTTCAATAGTTGTTGGCGGTTTTGCGCATCCTg         <  2:902264/140‑1 (MQ=255)

                                                                                                                             ggTGACTTTTTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCAGTGTAATCGTCGGGGAAACTTCAATAGTTGTTGGCGGTTTTGCGCATCCTg         <  2:940502/140‑1 (MQ=255)

                                                                                                                                  attttTCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCAGTGTAATCGTCGGGGAAACTTCAATAGTTGTTGGCGGTTTTGCGCATCCTGCAAGc    <  2:35805/139‑1 (MQ=255)

                                                                                                                                    ttttCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCAGTGTAATCGTCGGGGAAACTTCAATAGTTGTTGGCGGTTTTGCGCATCCTGCAAGCAt  <  1:821087/140‑1 (MQ=255)

TGCAGATTAACCGGGCCATTCGGACCAACCATGTAACCACGCGCGGTCATCTGTTTTTCCAGCACTTCTTGCAGCAGGAAACGCAGATCGCGGGAGGCGGTCAGGGTAACGATTTGATTATCGCGGGTGACTTTTGCCAGCGCCTGATCGGTACGCTGATCGGCACCATTAATGCTTACGGTGACGCCCATCAGGCTTGGATCCTGCTGTGGCAGTGTAATCGTCGGGGAAACTTCAATAGTTGTTGGCGGTTTTGCGCATCCTGCAAGCAT  >  NC_000913/453857‑454128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A