Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A19 F48 I1 R1	83	81.6	2760494	99.1%	2735649	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	939,077	G→T	E362* (GAA→TAA)	rarA →	recombination factor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	939,077	0	G	T	98.9%	312.0 / ‑3.8	88	coding (1084/1344 nt)	rarA	recombination factor
Reads supporting (aligned to +/- strand): ref base G (0/0); major base T (41/46); minor base . (1/0); total (42/46)
Fisher's exact test for biased strand distribution p-value = 4.77e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01

CGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACT  >  NC_000913/938940‑939209

cGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTaa                                                                                                                                    >  1:515417/1‑140 (MQ=255)

   ccTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGc                                                                                                                                 <  1:883208/140‑1 (MQ=255)

    cTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAGCGCGCCATTCCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGcc                                                                                                                                <  1:1095827/140‑1 (MQ=255)

    cTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGcc                                                                                                                                <  2:831961/140‑1 (MQ=255)

    cTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGcc                                                                                                                                <  1:445443/140‑1 (MQ=255)

    cTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGcc                                                                                                                                <  1:1241286/140‑1 (MQ=255)

    cTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGcc                                                                                                                                <  2:514366/140‑1 (MQ=255)

    cTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCCGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGcc                                                                                                                                <  1:1083551/140‑1 (MQ=255)

     tGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGccc                                                                                                                               <  1:687849/140‑1 (MQ=255)

            gCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCAATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTAt                                                                                                                        >  1:452413/1‑140 (MQ=255)

             cTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATg                                                                                                                       >  2:1261324/1‑140 (MQ=255)

                   tCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGc                                                                                                                 <  1:1372235/140‑1 (MQ=255)

                      cgTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCgg                                                                                                              <  1:208880/140‑1 (MQ=255)

                       gTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGt                                                                                                             >  1:345542/1‑140 (MQ=255)

                        ttGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGtt                                                                                                            <  1:424756/140‑1 (MQ=255)

                        ttGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGtt                                                                                                            <  2:498192/140‑1 (MQ=255)

                        ttGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGtt                                                                                                            <  1:1281030/140‑1 (MQ=255)

                            cccGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCAtt                                                                                                        >  1:562560/1‑140 (MQ=255)

                               ggcggAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTgt                                                                                                     >  2:694913/1‑139 (MQ=255)

                                       gTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATgcg                                                                                             <  2:515417/140‑1 (MQ=255)

                                             gcgcCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCcgacg                                                                                       >  1:170490/1‑140 (MQ=255)

                                               gcCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGaa                                                                                     >  1:262930/1‑140 (MQ=255)

                                                ccAGTGCTCAAGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCATCGCTGTCTACACTGCGTTTAAAGCCGCGTTGGCCGATGCTCGCTAACGACCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGaaa                                                                                    <  2:1314272/140‑1 (MQ=255)

                                                  aTTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAAtt                                                                                  >  2:403888/1‑140 (MQ=255)

                                                    tGCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTaa                                                                                >  1:323234/1‑140 (MQ=255)

                                                       tCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATg                                                                              <  2:388778/140‑1 (MQ=255)

                                                       tCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGa                                                                             <  2:1202430/140‑1 (MQ=255)

                                                       acAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGATGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGa                                                                             <  2:1195831/139‑1 (MQ=255)

                                                         aGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGa                                                                             >  2:1364443/1‑138 (MQ=255)

                                                         aGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGa                                                                             <  1:1364443/138‑1 (MQ=255)

                                                         aGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAg                                                                           <  1:129989/140‑1 (MQ=255)

                                                           gCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGa                                                                         >  2:268653/1‑140 (MQ=255)

                                                           gCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGa                                                                         >  1:74012/1‑140 (MQ=255)

                                                            cGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGaa                                                                        <  2:116403/140‑1 (MQ=255)

                                                             gATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGaaa                                                                       <  2:476592/140‑1 (MQ=255)

                                                              aTTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGaaa                                                                                    >  2:1192862/1‑126 (MQ=255)

                                                              aTTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGaaa                                                                                    <  1:1192862/126‑1 (MQ=255)

                                                              aTTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAAt                                                                      >  1:845527/1‑140 (MQ=255)

                                                              aTTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAAt                                                                      >  2:1319155/1‑140 (MQ=255)

                                                              aTTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATCATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAAt                                                                      >  2:1177476/1‑140 (MQ=255)

                                                                   ttACGTGGCCTGCGCGGC‑AAAAAGCAACGCTGTCTACAATGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCTGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCt                                                                 <  2:140814/140‑1 (MQ=255)

                                                                   ttACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCt                                                                 <  1:634558/140‑1 (MQ=255)

                                                                     aCCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTAc                                                               >  2:708658/1‑140 (MQ=255)

                                                                        tGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACggg                                                            <  2:1195577/140‑1 (MQ=255)

                                                                         ggCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGc                                                           <  1:343940/140‑1 (MQ=255)

                                                                         ggCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATCATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGc                                                           <  1:1177476/140‑1 (MQ=255)

                                                                          gCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCa                                                          >  2:694784/1‑140 (MQ=255)

                                                                          gCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCa                                                          >  2:592014/1‑140 (MQ=255)

                                                                           ccTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAg                                                         <  1:83885/140‑1 (MQ=255)

                                                                             tGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGa                                                       <  1:923877/140‑1 (MQ=255)

                                                                               cgcgcC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAat                                                     >  2:625817/1‑140 (MQ=255)

                                                                               cgcgcC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAat                                                     >  2:474153/1‑140 (MQ=255)

                                                                               cgcgcC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAat                                                     >  2:311363/1‑140 (MQ=255)

                                                                               cgcgcC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGC‑TACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAata                                                    >  2:1350759/1‑140 (MQ=255)

                                                                                gcgcC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAata                                                    >  2:741281/1‑140 (MQ=255)

                                                                                   cc‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCg                                                 <  1:1261324/140‑1 (MQ=255)

                                                                                    c‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGt                                                >  1:756166/1‑140 (MQ=255)

                                                                                      aaaaaGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGtt                                               <  2:904577/140‑1 (MQ=255)

                                                                                      aaaaaGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGtt                                               <  2:562560/140‑1 (MQ=255)

                                                                                      aaaaaGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGtt                                               <  2:880298/140‑1 (MQ=255)

                                                                                       aaaaGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTa                                              <  1:1080803/140‑1 (MQ=255)

                                                                                          aGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGc                                           <  1:1319155/140‑1 (MQ=255)

                                                                                           gCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCt                                          <  2:140065/140‑1 (MQ=255)

                                                                                               cGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCatt                                      >  2:215776/1‑139 (MQ=255)

                                                                                                gCTGTCTACAGTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCatga                                     <  1:1276642/140‑1 (MQ=255)

                                                                                                 cTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCatgat                                    <  2:345542/140‑1 (MQ=255)

                                                                                                 cTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCatgat                                    <  2:1306902/140‑1 (MQ=255)

                                                                                                       acacTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCa                              <  1:1246547/140‑1 (MQ=255)

                                                                                                            gCGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGc                         >  2:36999/1‑140 (MQ=255)

                                                                                                             cGTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCTTTTGCGTAATGCGCCGACGAAATTAATGATGGAAATGGGCTACGAGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCt                        >  2:450897/1‑140 (MQ=255)

                                                                                                              gTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCaaa                            >  2:520124/1‑135 (MQ=255)

                                                                                                              gTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCaaa                            <  1:520124/135‑1 (MQ=255)

                                                                                                              gTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCtt                       >  2:981790/1‑140 (MQ=255)

                                                                                                              gTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCtt                       >  2:586389/1‑140 (MQ=255)

                                                                                                              gTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCtt                       >  1:1325025/1‑140 (MQ=255)

                                                                                                              gTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCtt                       >  2:634241/1‑140 (MQ=255)

                                                                                                              gTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCtt                       >  2:653204/1‑140 (MQ=255)

                                                                                                              gTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCtt                       >  1:336774/1‑140 (MQ=255)

                                                                                                              gTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCtt                       >  2:430414/1‑140 (MQ=255)

                                                                                                              gTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCtt                       >  2:872124/1‑140 (MQ=255)

                                                                                                              gTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCtt                       >  2:789429/1‑140 (MQ=255)

                                                                                                              gTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCtt                       >  2:796712/1‑140 (MQ=255)

                                                                                                              gTTTAAAGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCtt                       >  1:384118/1‑140 (MQ=255)

                                                                                                                  aaaGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTAtgc                   <  1:478797/140‑1 (MQ=255)

                                                                                                                  aaaGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTAtgc                   >  2:1257329/1‑140 (MQ=255)

                                                                                                                  aaaGCCGCGCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTAtgc                   <  1:688294/140‑1 (MQ=255)

                                                                                                                       cgcgCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCg              >  2:1200361/1‑140 (MQ=255)

                                                                                                                       cgcgCTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCg              <  2:170490/140‑1 (MQ=255)

                                                                                                                          gcTGGCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTg           <  1:403888/140‑1 (MQ=255)

                                                                                                                              gCCGATGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTCCGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGt       <  1:796712/140‑1 (MQ=255)

                                                                                                                                   tGCTCGCTAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACt  <  2:384118/140‑1 (MQ=255)

CGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCC‑AAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACT  >  NC_000913/938940‑939209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A