Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F48 I1 R1	56	123.4	4244010	99.1%	4205813	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	940,030	G→T	Q201H (CAG→CAT)	serS →	serine‑‑tRNA ligase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	940,030	0	G	T	100.0%	423.6 / NA	118	Q201H (CAG→CAT)	serS	serine‑‑tRNA ligase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (70/48); total (70/48)

Only 100 of 120 total aligned reads displayed.

AGCTGACTGGTTCCCGCTTTGTGGTAATGAAAGGGCAGATTGCTCGCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCAGGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACGGCAGAAGTTCCGCTGACTAACCTGGTG  >  NC_000913/939894‑940165

aGCTGACTGGTTCCCGCTTTGTGGTAATGAAAGGGCAGATTGCTCGCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGac                                                                                                                                      <  2:2119309/140‑1 (MQ=255)

 gCTGACTGGTTCCCGCTTTGTGGTAATGAAAGGGCAGATTGCTCGCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGaca                                                                                                                                     <  2:1962846/140‑1 (MQ=255)

 gCTGACTGGTTCCCGCTTTGTGGTAATGAAAGGGCAGATTGCTCGCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGaca                                                                                                                                     <  2:1474035/140‑1 (MQ=255)

 acTGACTGGTTCCCGCTTTGTGGTAATGAAAGGGCAGATTGCTCGCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGaca                                                                                                                                     <  2:785201/139‑1 (MQ=255)

   ttaCTGGTTCCCGCTTTGTGGTAATGAAAGGGCAGATTGCTCGCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACg                                                                                                                                   <  1:1379976/138‑1 (MQ=255)

   tGACTGGTTCCCGCTTTGTGGTAATGAAAGGGCAGATTGCTCGCATGCAGCGCGCACTGGCGCAGTTTAGGCTGGATCTGCATACCGAACAGCGTGGCTACAGTGAGAAATATGTACGGTCCCTGGTTAACCATGACACg                                                                                                                                   <  2:1444841/140‑1 (MQ=255)

   tGACTGGTTCCCGCTTTGTGGTAATGAAAGGGCAGATTGCTCGCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACg                                                                                                                                   <  2:588810/140‑1 (MQ=255)

   tGACTGGTTCCCGCTTTGTGGTAATGAAAGGGCAGATTGCTCGCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACg                                                                                                                                   <  1:2082231/140‑1 (MQ=255)

     aCTGGTTCCCGCTTTGTGGTAATGAAAGGGCAGATTGCTCGCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCt                                                                                                                                 >  1:957679/1‑140 (MQ=255)

        ggTTCCCGCTTTGTGGTAATGAAAGGGCAGATTGCTCGCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTgta                                                                                                                              <  2:1386492/140‑1 (MQ=255)

                   tgtgGTAATGAAAGGGCAGATTGCTCGCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTc                                                                                                                   >  1:1317012/1‑140 (MQ=255)

                   tgtgGTAATGAAAGGGCAGATTGCTCGCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTc                                                                                                                   >  1:1913766/1‑140 (MQ=255)

                   tgtgGTAATGAAAGGGCAGATTGCTCGCATGCACCGCGCACTGTCGCAGGTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTc                                                                                                                   >  2:9049/1‑140 (MQ=255)

                             aaaGGGCAGATTGCTCGCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGaa                                                                                                         >  1:1926755/1‑140 (MQ=255)

                               aGGGCAGATTGCTCGCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTCCCTGGTTAACCATGACACGCTGTACGGTACAGGTCAACTGCCGAAAt                                                                                                       >  2:1684005/1‑140 (MQ=255)

                               aGGGCAGATTGCTCGCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAAt                                                                                                       >  1:1475434/1‑140 (MQ=255)

                                 ggCAGATTGCTCGCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAAttt                                                                                                     >  1:662880/1‑140 (MQ=255)

                                     gATTGCTCGCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTg                                                                                                 <  1:1554179/140‑1 (MQ=255)

                                      aTTGCTCGCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTgg                                                                                                <  1:2074096/140‑1 (MQ=255)

                                      aTTGCTCGCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTgg                                                                                                <  2:754073/140‑1 (MQ=255)

                                      aTTGCTCGCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCAGGACACGCTGTACGGTACGGGCCAACTGCCGAAATTTGCTgt                                                                                                >  2:111178/1‑139 (MQ=255)

                                          cTCGCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGAt                                                                                            <  2:1985810/140‑1 (MQ=255)

                                          cTCGCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGAt                                                                                            <  1:1244753/140‑1 (MQ=255)

                                           tCGCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATc                                                                                           <  2:1185171/140‑1 (MQ=255)

                                             gCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTg                                                                                         <  1:2018369/140‑1 (MQ=255)

                                                  cACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGCACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTACCa                                                                                    >  1:1510972/1‑140 (MQ=255)

                                                    ccGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGAt                                                                                            >  2:496260/1‑130 (MQ=255)

                                                    ccGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGAt                                                                                            <  1:496260/130‑1 (MQ=255)

                                                    ccGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATa                                                                                  >  2:536021/1‑140 (MQ=255)

                                                     cgcgCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATAc                                                                                 <  2:1903163/140‑1 (MQ=255)

                                                         cACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGt                                                                             >  1:246331/1‑140 (MQ=255)

                                                            tGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCg                                                                          >  2:365655/1‑140 (MQ=255)

                                                            tGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCg                                                                          >  2:1051983/1‑140 (MQ=255)

                                                              tCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCt                                                                        <  1:917414/140‑1 (MQ=255)

                                                               cGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTg                                                                       >  1:1135007/1‑140 (MQ=255)

                                                               cGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTg                                                                       <  1:1206178/140‑1 (MQ=255)

                                                                 cAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGga                                                                     >  2:761613/1‑140 (MQ=255)

                                                                 cAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGga                                                                     >  1:133367/1‑140 (MQ=255)

                                                                    tttATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGgaaga                                                                  >  1:2036089/1‑140 (MQ=255)

                                                                      tATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGgaagaag                                                                >  2:1605144/1‑140 (MQ=255)

                                                                        tGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACATGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGgaagaagaa                                                              >  1:1511545/1‑140 (MQ=255)

                                                                        tGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGgaagaagaa                                                              >  2:1321273/1‑140 (MQ=255)

                                                                        tGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGgaagaagaa                                                              >  2:1582817/1‑140 (MQ=255)

                                                                        tGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGgaagaagaa                                                              >  2:956287/1‑140 (MQ=255)

                                                                           tGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCa                                                           <  2:22523/140‑1 (MQ=255)

                                                                            ggATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAg                                                          <  2:1071733/140‑1 (MQ=255)

                                                                            ggATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAg                                                          <  1:536021/140‑1 (MQ=255)

                                                                            ggATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAg                                                          <  1:1864951/140‑1 (MQ=255)

                                                                             gATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGa                                                         <  2:1324870/140‑1 (MQ=255)

                                                                             gATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGa                                                         <  2:1475434/140‑1 (MQ=255)

                                                                             gATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGa                                                         <  2:1615922/140‑1 (MQ=255)

                                                                             gATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGa                                                         <  1:922461/140‑1 (MQ=255)

                                                                              aTCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGac                                                        <  1:1122230/140‑1 (MQ=255)

                                                                              aTCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGac                                                        >  2:2015485/1‑140 (MQ=255)

                                                                              aTCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGac                                                        >  2:2020091/1‑140 (MQ=255)

                                                                              aTCTACATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGac                                                        <  2:16610/140‑1 (MQ=255)

                                                                              aTCTACATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGac                                                        >  1:16610/1‑140 (MQ=255)

                                                                                 tGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACAcc                                                     <  2:393152/140‑1 (MQ=255)

                                                                                  gCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCa                                                    >  1:1506410/1‑140 (MQ=255)

                                                                                   cATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAg                                                   <  1:1565663/140‑1 (MQ=255)

                                                                                   cATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAg                                                   <  2:2086989/140‑1 (MQ=255)

                                                                                   cATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAg                                                   <  1:413556/140‑1 (MQ=255)

                                                                                     tACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTa                                                 >  2:223505/1‑140 (MQ=255)

                                                                                          aaCAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGac                                                        >  2:838421/1‑128 (MQ=255)

                                                                                          aaCAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGac                                                        <  1:838421/128‑1 (MQ=255)

                                                                                          aaCAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTAt                                            >  1:1253988/1‑140 (MQ=255)

                                                                                          aaCAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTAt                                            >  1:40175/1‑140 (MQ=255)

                                                                                          aaCAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTAt                                            >  1:258832/1‑140 (MQ=255)

                                                                                           aCAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATg                                           >  2:1624905/1‑140 (MQ=255)

                                                                                           aCAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATg                                           >  1:1180656/1‑140 (MQ=255)

                                                                                             aGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATgcg                                         >  2:1796882/1‑140 (MQ=255)

                                                                                                 tGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGa                                     >  1:486905/1‑140 (MQ=255)

                                                                                                  ggCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGAt                                    >  2:1221623/1‑140 (MQ=255)

                                                                                                    cTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATcc                                  <  2:1690032/140‑1 (MQ=255)

                                                                                                    cTACAGTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATcc                                  >  1:594302/1‑140 (MQ=255)

                                                                                                         gTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACg                             >  1:220760/1‑140 (MQ=255)

                                                                                                         gTGAGAACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACg                             >  2:453313/1‑140 (MQ=255)

                                                                                                           gagaACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACGGc                           <  2:486905/140‑1 (MQ=255)

                                                                                                           gagaACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACGGc                           <  1:1221623/140‑1 (MQ=255)

                                                                                                             gaACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACGGCAg                         >  1:1016586/1‑140 (MQ=255)

                                                                                                             gaACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACGGCAg                         >  1:1954927/1‑140 (MQ=255)

                                                                                                             gaACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACGGCAg                         >  1:336861/1‑140 (MQ=255)

                                                                                                             gaACTATGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACGGCAg                         >  1:818215/1‑140 (MQ=255)

                                                                                                                   tGTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACGGCAGAAGTTc                   >  1:1346513/1‑140 (MQ=255)

                                                                                                                    gTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACGGCAGAAGTTcc                  >  1:580298/1‑140 (MQ=255)

                                                                                                                    gTTCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACGGCAGAAGTTcc                  <  2:580298/140‑1 (MQ=255)

                                                                                                                     ttCCGTACCTGGTTAACCATGACTCGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACGGCAGAAGTTCCg                 <  2:1262280/140‑1 (MQ=255)

                                                                                                                     ttCCGTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACGGCAGAAGTTCCg                 <  1:9049/140‑1 (MQ=255)

                                                                                                                       ccGTACCTGGTTAACCATGACGCGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACGGCAGAAGTTCCGCt               <  2:1597719/140‑1 (MQ=255)

                                                                                                                        cGTACCTGGTTAACCATGACACGCTGTACGGTGCGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACGGCAGAAGTTCCGCTg              >  1:47029/1‑140 (MQ=255)

                                                                                                                         gTACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACGGCAGAAGTTCCGCTGa             <  1:223505/140‑1 (MQ=255)

                                                                                                                          tACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACGGCAGAAGTTCCGCTGAc            >  2:579732/1‑140 (MQ=255)

                                                                                                                          tACCTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACGGCAGAAGTTCCGCTGAc            >  1:1405344/1‑140 (MQ=255)

                                                                                                                             cTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACGGCAGAAGTTCCGCTGACTaa         >  2:75574/1‑140 (MQ=255)

                                                                                                                             cTGGTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGAAGACACCAGTAACTATGCGCTGATCCCAACGGCAGAAGTTCCGCTGACTaa         >  2:1030438/1‑140 (MQ=255)

                                                                                                                               ggTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACGGCAGAAGTTCCGCTGACTAAcc       >  2:1067713/1‑140 (MQ=255)

                                                                                                                               ggTTAACCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACGGCAGAAGTTCCGCTGACTAAcc       >  1:1693054/1‑140 (MQ=255)

                                                                                                                                    aCCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACGGCAGAAGTTCCGCTGACTAACCTGGTg  >  2:4427/1‑140 (MQ=255)

                                                                                                                                    aCCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACGGCAGAAGTTCCGCTGACTAACCTGGTg  >  1:1099250/1‑140 (MQ=255)

                                                                                                                                    aCCATGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACGGCAGAAGTTCCGCTGACTAACCTGGTg  <  1:75574/140‑1 (MQ=255)

AGCTGACTGGTTCCCGCTTTGTGGTAATGAAAGGGCAGATTGCTCGCATGCACCGCGCACTGTCGCAGTTTATGCTGGATCTGCATACCGAACAGCATGGCTACAGTGAGAACTATGTTCCGTACCTGGTTAACCAGGACACGCTGTACGGTACGGGTCAACTGCCGAAATTTGCTGGCGATCTGTTCCATACTCGTCCGCTGGAAGAAGAAGCAGACACCAGTAACTATGCGCTGATCCCAACGGCAGAAGTTCCGCTGACTAACCTGGTG  >  NC_000913/939894‑940165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A