Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F48 I1 R1 56 123.4 4244010 99.1% 4205813 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 941,635 C→A P226Q (CCG→CAG)  dmsA → dimethyl sulfoxide reductase subunit A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913941,6350CA100.0% 336.0 / NA 97P226Q (CCG→CAG) dmsAdimethyl sulfoxide reductase subunit A
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (35/62);  total (35/62)

Only 100 of 106 total aligned reads displayed.

GCCGCCGGGAAATACCCTGGTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCATGATCATCATCGAT  >  NC_000913/941498‑941771
                                                                                                                                         |                                                                                                                                         
gccgccGGGAAATACCCTGGTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGt                                                                                                                                         <  2:306562/140‑1 (MQ=255)
gccgccGGGAAATACCCTGGTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGt                                                                                                                                         <  1:1183395/140‑1 (MQ=255)
  cgccgGGAAATACCCTGGTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCg                                                                                                                                       <  2:942667/140‑1 (MQ=255)
   gccgGGAAATACCCTGGTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCgg                                                                                                                                      <  2:106567/140‑1 (MQ=255)
     cgGGAAATACCCTGGTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCCGGGGAGATGGGAACAGTCAGTCGGat                                                                                                                                    >  2:1765764/1‑140 (MQ=255)
           aTACCCTGGTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGaa                                                                                                                              <  2:565997/140‑1 (MQ=255)
           aTACCCTGGTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGaa                                                                                                                              <  2:1393842/140‑1 (MQ=255)
               ccTGGTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACa                                                                                                                          <  2:1931887/140‑1 (MQ=255)
               ccTGGTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGGTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGaaaaaa                                                                                                                          >  2:62609/1‑138 (MQ=255)
                cTGGTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTGCTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAg                                                                                                                         <  2:896934/140‑1 (MQ=255)
                cTGGTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAg                                                                                                                         <  1:127479/140‑1 (MQ=255)
                  ggTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAgga                                                                                                                       >  1:667164/1‑138 (MQ=255)
                   gTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTTGGCAGATGGCAAAAGCCAGTCGGATATCGAAAACAGTaa                                                                                                                      >  1:73492/1‑140 (MQ=255)
                   gTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCCACCGCCAGTCGGATATCGAAAACAGTaa                                                                                                                      >  2:659349/1‑140 (MQ=255)
                   gTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTaa                                                                                                                      <  1:1941867/140‑1 (MQ=255)
                    tCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAg                                                                                                                     >  1:1162283/1‑140 (MQ=255)
                        gcgGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTgg                                                                                                                 <  2:518620/140‑1 (MQ=255)
                        gcgGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTgg                                                                                                                 <  1:958879/140‑1 (MQ=255)
                        gcgGCTGATGAACTGCTGCGGCGGCGATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTTGGCAGATGGCAACAGGCAGTCGGATATCGAAAACAGTAAGCTgg                                                                                                                 >  1:1033320/1‑140 (MQ=255)
                         cgGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGt                                                                                                                >  2:1709360/1‑140 (MQ=255)
                             tgatgaACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTg                                                                                                            <  2:1180904/140‑1 (MQ=255)
                             tgatgaACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTg                                                                                                            <  1:19851/140‑1 (MQ=255)
                             tgatgaACTGCTGCGGCGGCTATCTGAACCATTAAGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCACATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTg                                                                                                            >  2:1218170/1‑140 (MQ=255)
                                  aaCTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGtt                                                                                                       <  1:1701784/140‑1 (MQ=255)
                                  aaCTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGtt                                                                                                       <  1:1210867/140‑1 (MQ=255)
                                  aaCTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGtt                                                                                                       <  1:1810883/140‑1 (MQ=255)
                                  aaCTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGtt                                                                                                       <  1:1874460/140‑1 (MQ=255)
                                  aaCTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGtt                                                                                                       <  1:1044141/140‑1 (MQ=255)
                                   aCTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGttt                                                                                                      <  1:435374/140‑1 (MQ=255)
                                       ctgcGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGta                                                                                                  >  1:245250/1‑140 (MQ=255)
                                        tgcGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGtaa                                                                                                 <  1:1290350/140‑1 (MQ=255)
                                        tgcGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGtaa                                                                                                 <  1:509821/140‑1 (MQ=255)
                                         gcggcgGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGtaat                                                                                                >  2:295856/1‑140 (MQ=255)
                                         gcggcgGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGtaat                                                                                                >  1:554508/1‑140 (MQ=255)
                                         gcggcgGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGtaat                                                                                                <  1:193362/140‑1 (MQ=255)
                                          cggcggCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGtaata                                                                                               >  2:1056050/1‑140 (MQ=255)
                                          cggcggCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGGTTGGtaatt                                                                                               >  2:133465/1‑139 (MQ=255)
                                            gcggcTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAAc                                                                                             >  1:1589409/1‑140 (MQ=255)
                                               gcTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCt                                                                                          >  1:542547/1‑140 (MQ=255)
                                                        aCCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAAcg                                                                                 >  1:1028255/1‑140 (MQ=255)
                                                         ccATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAAcgc                                                                                <  1:1218170/140‑1 (MQ=255)
                                                          cATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAAcgcg                                                                               >  1:1243239/1‑140 (MQ=255)
                                                           aTTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGa                                                                              <  2:1589409/140‑1 (MQ=255)
                                                           aTTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGa                                                                              <  2:1186258/140‑1 (MQ=255)
                                                             tACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAAt                                                                            <  1:295856/140‑1 (MQ=255)
                                                             tACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAAt                                                                            >  1:211115/1‑140 (MQ=255)
                                                                ggCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAg                                                                         <  2:611112/140‑1 (MQ=255)
                                                                ggCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAg                                                                         <  2:1151371/140‑1 (MQ=255)
                                                                 gCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGt                                                                        >  2:1107341/1‑140 (MQ=255)
                                                                 gCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGt                                                                        >  2:1974107/1‑140 (MQ=255)
                                                                    actactCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGc                                                                     >  2:763225/1‑140 (MQ=255)
                                                                     ctactaCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑g                                                                   <  2:1305050/140‑1 (MQ=255)
                                                                      tactCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑gg                                                                  >  2:1897267/1‑140 (MQ=255)
                                                                       actCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGt                                                                 <  2:542547/140‑1 (MQ=255)
                                                                          cctccGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTggg                                                              <  2:1028255/140‑1 (MQ=255)
                                                                           ctccGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAAGAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTgggg                                                             <  2:531611/140‑1 (MQ=255)
                                                                           ctccGCGCAAATTGCAGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGAAACAGCCAGTCGGATAACGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTgggg                                                             <  1:1757665/140‑1 (MQ=255)
                                                                           ctccGCGCAAAGTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTgggg                                                             <  1:62609/140‑1 (MQ=255)
                                                                            tccGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGt                                                            <  2:392685/140‑1 (MQ=255)
                                                                            tccGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGt                                                            <  2:1365662/140‑1 (MQ=255)
                                                                            cccGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGt                                                            <  2:149701/139‑1 (MQ=255)
                                                                             ccGCGGAAATTGCGGAAGGTTTGAATTAGACCTACGGGGGCTGGGCAGTTGGCTAGAGCCAGTCAGATGTCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATATCCCTGGCGAAACGCGAGTGAGTGGC‑GGTGGGGTg                                                           <  2:188710/140‑1 (MQ=255)
                                                                             ccGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGTg                                                           <  2:2074022/140‑1 (MQ=255)
                                                                              cgcgCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGTGa                                                          >  1:1183615/1‑140 (MQ=255)
                                                                                cgcAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑Gggggggggggt                                                        >  2:1988780/1‑135 (MQ=255)
                                                                                cgcAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGTGACt                                                        >  2:1498809/1‑140 (MQ=255)
                                                                                cgcAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCAGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGGTggggggct                                                         >  1:1686233/1‑136 (MQ=255)
                                                                                  cAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGTGACTTa                                                      <  1:995229/140‑1 (MQ=255)
                                                                                   aaaTTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGGGGCTTat                                                     >  2:785095/1‑139 (MQ=255)
                                                                                    aaTTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGTGACTTACt                                                    <  1:1107341/140‑1 (MQ=255)
                                                                                        gCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGGGGGGGGGCGTATTATCt                                                >  2:1993642/1‑140 (MQ=255)
                                                                                                gttGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGTGACTTACTATCTTGAACAgg                                        <  1:1063781/139‑1 (MQ=255)
                                                                                                         taCCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGTGGGTTAATATTTTTAACAAGCACGCCAGa                               >  2:832026/1‑140 (MQ=255)
                                                                                                         taCCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGCGGGGGGGCTTACTATCTTTAACAAGGACGCCAGa                               >  2:379478/1‑140 (MQ=255)
                                                                                                         taCCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGCAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGGGGGGGGAATTATTTATTTTAACAGGGACACCAGa                               >  2:957288/1‑140 (MQ=255)
                                                                                                          aCCTACGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGGGGCTTACTATCTTTAAAAAGCACGCCAGaa                              >  1:1545476/1‑140 (MQ=255)
                                                                                                              aCGGCGGCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGGGGCTTTCTATCTTTAAAAGGGACGCCCGAAAACt                          >  1:1835361/1‑140 (MQ=255)
                                                                                                               cggcggCTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGGGGGGGGGCTTAATTTTTTTTACAAGCACGCCCGaaaaata                         >  2:410639/1‑136 (MQ=255)
                                                                                                                ggcggcTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTaa                        <  1:957288/140‑1 (MQ=255)
                                                                                                                 gcggcTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGGGGGGGGGGTTTAGTATTTTGAA‑AAGCACGCCCGAAAACTAAt                       >  2:2068810/1‑140 (MQ=255)
                                                                                                                 gcggcTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAAt                       <  1:126362/140‑1 (MQ=255)
                                                                                                                 gcggcTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAAt                       <  1:1751280/140‑1 (MQ=255)
                                                                                                                 gcggcTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGGGGCGTTCTATCCTTAAAAAGCACGCCCGGAAACTaaa                       >  1:1307876/1‑139 (MQ=255)
                                                                                                                  cggcTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATg                      <  2:2099508/140‑1 (MQ=255)
                                                                                                                  cggcTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATg                      <  2:1345404/140‑1 (MQ=255)
                                                                                                                   ggcTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGGGGGGGGGCTTACTATCTTTAACAAGCACCCCCGAAAACTaaatc                     >  2:1438281/1‑137 (MQ=255)
                                                                                                                    gcTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGGGGGTTACTATCTTTAAAAAGCACGCCAGAAAAATAATGct                    >  2:244271/1‑139 (MQ=255)
                                                                                                                     cTGGGCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGGGGCTTACTATCTTTAACAAGCACGCCAGAAAAATAATTccc                   >  2:2050663/1‑140 (MQ=255)
                                                                                                                       gggCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGc                 <  1:1835792/140‑1 (MQ=255)
                                                                                                                       gggCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGc                 <  1:1357751/140‑1 (MQ=255)
                                                                                                                        ggCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGTGGCTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCa                <  1:1818977/140‑1 (MQ=255)
                                                                                                                        ggCAGATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCa                <  2:1400081/140‑1 (MQ=255)
                                                                                                                            gATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCATGat            <  1:1709360/140‑1 (MQ=255)
                                                                                                                            gATGGCAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCATGat            <  1:1233418/140‑1 (MQ=255)
                                                                                                                                 cAACAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCATGatcatca       <  1:250097/140‑1 (MQ=255)
                                                                                                                                  aaCAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGGGGAATACTATCTTGAACAGGGACGCCCGAAAACTAATGGCCGCCCGattatcat      >  2:1506748/1‑140 (MQ=255)
                                                                                                                                   aCAGCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGGGAGTTTCTATCTTGAAAAGGCACGCCAGAAAACTAATGCCCCCATGatcatcatc     >  1:1055790/1‑140 (MQ=255)
                                                                                                                                      gCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCATGATCATCATCGAt  <  1:1765764/140‑1 (MQ=255)
                                                                                                                                      gCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCATGATCATCATCGAt  <  1:1767215/140‑1 (MQ=255)
                                                                                                                                      gCCAGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCATGATCATCATCGAt  <  2:245250/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                         
GCCGCCGGGAAATACCCTGGTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGC‑GGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCATGATCATCATCGAT  >  NC_000913/941498‑941771

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A