Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 948,861 G→T I236I (ATC→ATA)  ycaN ← putative LysR‑type transcriptional regulator YcaN

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913948,8610GT100.0% 371.7 / NA 108I236I (ATC→ATA) ycaNputative LysR‑type transcriptional regulator YcaN
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (74/34);  total (74/34)

Only 100 of 113 total aligned reads displayed.

CAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGAAAAACAA  >  NC_000913/948726‑948994
                                                                                                                                       |                                                                                                                                     
cAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATAc                                                                                                                                   <  1:331123/140‑1 (MQ=255)
     cGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCa                                                                                                                              <  1:1836465/140‑1 (MQ=255)
             atatACTGGCGGTTTGGATAATAGATCTTGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGGACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCaa                                                                                                                      >  1:265953/1‑140 (MQ=255)
                 aCTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACg                                                                                                                  <  2:1884281/140‑1 (MQ=255)
                 aCTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACg                                                                                                                  <  2:1656753/140‑1 (MQ=255)
                    ggCGGTTTTGATAATAGATCTGGAAGCCTGGACGCTCTTTGCTCCCGTCTTCCAGTACACATTCTAAACGACCAATATCAAGGGACTCCTTGATCTGTTCATAGAGCAGATAACCTATACCAGCACCCATCAAAAAGGcc                                                                                                               >  2:1830321/1‑140 (MQ=255)
                    ggCGGTTTGGGTAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGGACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGcc                                                                                                               >  1:1559602/1‑140 (MQ=255)
                    ggCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGcc                                                                                                               >  2:31720/1‑140 (MQ=255)
                     gCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCt                                                                                                              >  1:1484012/1‑140 (MQ=255)
                     gCGGTTTGGATAATAAATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCCGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCt                                                                                                              >  2:1172357/1‑140 (MQ=255)
                      cGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTc                                                                                                             >  2:139577/1‑140 (MQ=255)
                           ttggtaataGATCTTGGAACCTGGACGCTCTGTGTTCCCGTCTTCCAGTATACATTCTAAAACACCAGTATCAAGGGAATCCTTGGTCTGTTCATAGAGCAGATACCCCATACCACCAACCCCCAAAACGGCCTCCAGtt                                                                                                        >  2:1612597/5‑140 (MQ=255)
                            ggATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTc                                                                                                       <  2:1526396/140‑1 (MQ=255)
                                 ataGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCAt                                                                                                  <  2:2126488/140‑1 (MQ=255)
                                     aTCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAAc                                                                                              >  1:851405/1‑140 (MQ=255)
                                       cTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAAcat                                                                                            >  1:1585224/1‑140 (MQ=255)
                                       cTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAAcat                                                                                            >  2:1290453/1‑140 (MQ=255)
                                       cTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAAcat                                                                                            >  2:1301467/1‑140 (MQ=255)
                                           aaGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACatcatc                                                                                        <  2:1484012/140‑1 (MQ=255)
                                           aaGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACatcatc                                                                                        <  1:1290453/140‑1 (MQ=255)
                                             gCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCa                                                                                      <  2:435891/140‑1 (MQ=255)
                                             gCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCa                                                                                      <  1:2101384/140‑1 (MQ=255)
                                               cTGGACGCTCTGTGCTCTAGGCTTCCAGTACACATACTAAACGAGCAGTATCAAGGTACTCCTTGATCTGGACATAGAGCAGATACGCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGa                                                                                    >  2:2019285/1‑140 (MQ=255)
                                               cTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACatcatc                                                                                        >  1:535361/1‑136 (MQ=255)
                                               cTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGa                                                                                    <  2:1713689/140‑1 (MQ=255)
                                               cTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGa                                                                                    <  1:139577/140‑1 (MQ=255)
                                                tGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGaa                                                                                   >  1:1897088/1‑140 (MQ=255)
                                                 ggACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAAt                                                                                  <  1:31720/140‑1 (MQ=255)
                                                     gCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGata                                                                              <  2:367912/140‑1 (MQ=255)
                                                                cAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCACAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGTTATTTCCTGCGAc                                                                   >  2:1090836/1‑140 (MQ=255)
                                                                    cTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCa                                                               <  2:1084606/140‑1 (MQ=255)
                                                                       ccAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAAtt                                                            >  1:379699/1‑140 (MQ=255)
                                                                            acacATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGTACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAg                                                       <  2:1702236/140‑1 (MQ=255)
                                                                            acacATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAg                                                       <  1:1721104/140‑1 (MQ=255)
                                                                            acacATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGACATTTCCTGCGACAGCAATTTCCAg                                                       >  2:1174155/1‑140 (MQ=255)
                                                                             cacaTTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGc                                                      >  1:463599/1‑140 (MQ=255)
                                                                              acaTTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCt                                                     <  2:788714/140‑1 (MQ=255)
                                                                                   cTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCttt                                                >  2:925680/1‑140 (MQ=255)
                                                                                   cTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCttt                                                >  2:1031881/1‑140 (MQ=255)
                                                                                     aaaCGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGc                                              >  2:2129262/1‑140 (MQ=255)
                                                                                     aaaCGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGc                                              >  1:205886/1‑140 (MQ=255)
                                                                                      aaCGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCa                                             >  2:1325387/1‑140 (MQ=255)
                                                                                           ccAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTg                                        >  1:933291/1‑140 (MQ=255)
                                                                                           ccAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAACAATTTCCAGCTCCTTTGCAAATTg                                        >  1:1421035/1‑140 (MQ=255)
                                                                                            cAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGc                                       <  2:379699/140‑1 (MQ=255)
                                                                                              gTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCa                                     >  2:920447/1‑140 (MQ=255)
                                                                                                    aGGTACTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGaa                               >  2:1970045/1‑140 (MQ=255)
                                                                                                         cTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGtt                          >  2:2060497/1‑140 (MQ=255)
                                                                                                         cTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGtt                          >  2:1213672/1‑140 (MQ=255)
                                                                                                         cTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGtt                          >  1:489026/1‑140 (MQ=255)
                                                                                                         cTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGtt                          >  1:634353/1‑140 (MQ=255)
                                                                                                         cTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGtt                          >  2:399087/1‑140 (MQ=255)
                                                                                                         cTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGtt                          >  1:265818/1‑140 (MQ=255)
                                                                                                         cTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGtt                          >  2:1725674/1‑140 (MQ=255)
                                                                                                         cTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGtt                          >  2:1506411/1‑140 (MQ=255)
                                                                                                         cTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGtt                          >  2:1825610/1‑140 (MQ=255)
                                                                                                         cTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGtt                          >  2:637109/1‑140 (MQ=255)
                                                                                                         cTCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGACATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGtt                          <  1:1174155/140‑1 (MQ=255)
                                                                                                          tCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGttt                         >  1:982160/1‑140 (MQ=255)
                                                                                                          tCCTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCAACCAGAATGATATTTCCTGCCACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGttt                         <  1:1970045/140‑1 (MQ=255)
                                                                                                           ccTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGaa                               <  1:1825324/133‑1 (MQ=255)
                                                                                                           ccTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGaa                               >  2:1825324/1‑133 (MQ=255)
                                                                                                            cTTGATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGc                       >  1:228327/1‑140 (MQ=255)
                                                                                                               gATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGc                    >  2:2103829/1‑140 (MQ=255)
                                                                                                               gATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGc                    >  1:1082033/1‑140 (MQ=255)
                                                                                                               gATCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGc                    >  1:1294243/1‑140 (MQ=255)
                                                                                                                 tCTGTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTg                  >  2:1994300/1‑140 (MQ=255)
                                                                                                                    gTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGtt                          <  1:1477677/129‑1 (MQ=255)
                                                                                                                    gTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGtt                          >  2:1477677/1‑129 (MQ=255)
                                                                                                                    gTTCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGa               <  1:1994300/140‑1 (MQ=255)
                                                                                                                     ttCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGAt              >  2:1106992/1‑140 (MQ=255)
                                                                                                                     ttCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGAt              >  1:1561504/1‑140 (MQ=255)
                                                                                                                     ttCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGAt              >  1:1785088/1‑140 (MQ=255)
                                                                                                                      tCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATa             >  1:1838443/1‑140 (MQ=255)
                                                                                                                      tCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATa             >  2:831746/1‑140 (MQ=255)
                                                                                                                      tCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATa             >  1:1804302/1‑140 (MQ=255)
                                                                                                                      tCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATa             >  1:1844757/1‑140 (MQ=255)
                                                                                                                      tCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATa             >  2:461557/1‑140 (MQ=255)
                                                                                                                      tCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATa             >  2:400793/1‑140 (MQ=255)
                                                                                                                      tCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATa             >  1:509190/1‑140 (MQ=255)
                                                                                                                      tCATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATa             >  2:1022969/1‑140 (MQ=255)
                                                                                                                       cATAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATaa            <  2:1559602/140‑1 (MQ=255)
                                                                                                                         tAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACg          <  1:1106621/140‑1 (MQ=255)
                                                                                                                         tAGAGCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACg          <  1:1164207/140‑1 (MQ=255)
                                                                                                                          agagCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGa         >  1:1894366/1‑140 (MQ=255)
                                                                                                                          agagCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGa         >  1:1490150/1‑140 (MQ=255)
                                                                                                                          agagCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGa         >  1:1611981/1‑140 (MQ=255)
                                                                                                                           gagCGGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGaa        <  1:826275/140‑1 (MQ=255)
                                                                                                                            agCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGaaa       >  2:315813/1‑140 (MQ=255)
                                                                                                                            agCAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGaaa       >  2:1332654/1‑140 (MQ=255)
                                                                                                                              cAGATACCCTATACCAGCCCCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGaaaaa     <  1:36547/140‑1 (MQ=255)
                                                                                                                              cAGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGaaaaa     <  2:205886/140‑1 (MQ=255)
                                                                                                                               aGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGAAAaac    >  1:398737/1‑140 (MQ=255)
                                                                                                                               aGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGAAAaac    >  1:373546/1‑140 (MQ=255)
                                                                                                                               aGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGAAAaac    >  2:629544/1‑140 (MQ=255)
                                                                                                                               aGATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGAAAaac    >  1:1824371/1‑140 (MQ=255)
                                                                                                                                gATACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGAAAaaca   <  2:933291/140‑1 (MQ=255)
                                                                                                                                 aTACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGAAAaacaa  >  1:162266/1‑140 (MQ=255)
                                                                                                                                 aTACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGAAAaacaa  >  1:762668/1‑140 (MQ=255)
                                                                                                                                 aTACCCTATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGAAAaacaa  >  2:14374/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                     
CAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGAAAAACAA  >  NC_000913/948726‑948994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A