Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	951,898	C→A	G553C (GGT→TGT)	pflB ←	pyruvate formate‑lyase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	951,898	0	C	A	100.0%	432.9 / NA	124	G553C (GGT→TGT)	pflB	pyruvate formate‑lyase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (61/63); total (61/63)

Only 100 of 127 total aligned reads displayed.

GCGTCACGGTAGGTGTGCAGTTTCTGAATTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACCGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCG  >  NC_000913/951762‑952034

gCGTCACGGTAGGTGTGCAGTTTCTGAATTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGtt                                                                                                                                       >  2:1666617/1‑139 (MQ=255)

 cGTCACGGTAGGTGTGCAGTTTCTGAATTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCt                                                                                                                                      >  2:622088/1‑140 (MQ=255)

  gTCACGGTAGGTGTGCAGTTTCTGAATTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCtt                                                                                                                                     >  2:1144482/1‑140 (MQ=255)

  gTCACGGTAGGTGTGCAGTTTCTGAATTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCtt                                                                                                                                     <  2:873588/140‑1 (MQ=255)

     aCGGTAGGTGTGCAGTTTCTGAATTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGt                                                                                                                                  >  1:788175/1‑140 (MQ=255)

      cGGTAGGTGTGCAGTTTCTGAATTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTc                                                                                                                                 >  1:732572/1‑140 (MQ=255)

      cGGTAGGTGTGCAGTTTCTGAATTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTc                                                                                                                                 >  2:1557375/1‑140 (MQ=255)

           ggTGTGCAGTTTCTGAATTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGaa                                                                                                                            <  2:224273/140‑1 (MQ=255)

              gtgtAGTTTCTGAATTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCg                                                                                                                         >  2:787626/1‑140 (MQ=255)

               tgCAGTTTCTGAATTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCgg                                                                                                                        >  2:857594/1‑140 (MQ=255)

               tgCAGTTTCTGAATTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCgg                                                                                                                        >  1:1689758/1‑140 (MQ=255)

                gCAGTTTCTGAATTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGt                                                                                                                       >  2:1425571/1‑140 (MQ=255)

                 cAGTTTCTGAATTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGtt                                                                                                                      >  1:966224/1‑140 (MQ=255)

                   gTTTCTGAATTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTa                                                                                                                    >  1:1349041/1‑140 (MQ=255)

                   gTTTCTGAATTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTa                                                                                                                    >  1:591069/1‑140 (MQ=255)

                     ttCTGAATTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAAc                                                                                                                  >  1:1760127/1‑140 (MQ=255)

                      tCTGAATTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACt                                                                                                                 >  1:1492546/1‑140 (MQ=255)

                      tCTGAATTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACt                                                                                                                 >  1:1770672/1‑140 (MQ=255)

                       cTGAATTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACtt                                                                                                                <  2:1689758/140‑1 (MQ=255)

                       cTGAATTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACtt                                                                                                                <  2:1006232/140‑1 (MQ=255)

                        tGAATTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACttt                                                                                                               <  1:1876549/140‑1 (MQ=255)

                         gAATTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTc                                                                                                              <  1:1557375/140‑1 (MQ=255)

                          aaTTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCg                                                                                                             <  2:384528/140‑1 (MQ=255)

                            ttttCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTctca                                                                                                           <  1:1854021/140‑4 (MQ=255)

                            ttttCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCa                                                                                                           <  1:184042/140‑1 (MQ=255)

                              ttcttcATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCata                                                                                                         <  1:843054/140‑1 (MQ=255)

                                cttcATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATAtt                                                                                                       <  1:10393/140‑1 (MQ=255)

                                         aCGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAg                                                                                              >  1:699288/1‑140 (MQ=255)

                                                aCCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGa                                                                                       >  2:1274787/1‑140 (MQ=255)

                                                   aGGTAAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTc                                                                                    <  1:787626/140‑1 (MQ=255)

                                                    ggTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTcg                                                                                   >  1:568550/1‑139 (MQ=255)

                                                     gTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTcag                                                                                  <  2:633270/140‑1 (MQ=255)

                                                     gTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTcag                                                                                  <  2:1941876/140‑1 (MQ=255)

                                                     gTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTcag                                                                                  >  2:1064911/1‑140 (MQ=255)

                                                     gTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTcag                                                                                  >  2:814443/1‑140 (MQ=255)

                                                        aaCAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTcagcag                                                                               <  1:1064911/140‑1 (MQ=255)

                                                         aCAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCagcagc                                                                              >  1:874574/1‑140 (MQ=255)

                                                         aCAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCagcagc                                                                              >  2:1871482/1‑140 (MQ=255)

                                                          cAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAgcagca                                                                             <  1:1787572/140‑1 (MQ=255)

                                                          cAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAgcagca                                                                             <  1:236713/140‑1 (MQ=255)

                                                             ccAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACg                                                                          <  1:48161/140‑1 (MQ=255)

                                                               aGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGa                                                                        <  2:591069/140‑1 (MQ=255)

                                                               aGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGa                                                                        >  2:1259588/1‑140 (MQ=255)

                                                               aGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGa                                                                        >  2:139660/1‑140 (MQ=255)

                                                               aGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGa                                                                        <  2:1397233/140‑1 (MQ=255)

                                                                  tCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAg                                                                     <  1:814443/140‑1 (MQ=255)

                                                                  tCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAg                                                                     <  2:1590895/140‑1 (MQ=255)

                                                                  tCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAg                                                                     <  2:526395/140‑1 (MQ=255)

                                                                   cATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGa                                                                    <  2:1760127/140‑1 (MQ=255)

                                                                    aTCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGAc                                                                   <  1:732602/140‑1 (MQ=255)

                                                                    aTCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGAc                                                                   <  1:1097884/140‑1 (MQ=255)

                                                                     tCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGAcc                                                                  <  1:1100857/140‑1 (MQ=255)

                                                                       tACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCat                                                                >  2:709177/1‑139 (MQ=255)

                                                                          acGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGTCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACATACCAGCGa                                                             <  2:1446579/140‑1 (MQ=255)

                                                                          acGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGa                                                             >  2:908757/1‑140 (MQ=255)

                                                                                aTCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACcac                                                       >  1:822995/1‑140 (MQ=255)

                                                                                aTCATTGTTACCAAACTGCGGATATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACcac                                                       >  1:34260/1‑140 (MQ=255)

                                                                                 tCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACcaca                                                      >  1:403860/1‑140 (MQ=255)

                                                                                     tGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGcc                                                  <  1:191864/140‑1 (MQ=255)

                                                                                     tGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGcc                                                  <  2:732572/140‑1 (MQ=255)

                                                                                      gTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCGCACGCCa                                                 <  2:568550/140‑1 (MQ=255)

                                                                                      gTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCa                                                 <  1:2147120/140‑1 (MQ=255)

                                                                                        tACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATg                                               >  1:824117/1‑140 (MQ=255)

                                                                                         aCCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCTATACCACACGCCATgt                                              >  2:1703617/1‑139 (MQ=255)

                                                                                         aCCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATgg                                              >  1:1526354/1‑140 (MQ=255)

                                                                                          ccAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGcc                                                  >  2:1067294/1‑135 (MQ=255)

                                                                                          ccAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGt                                             >  2:237877/1‑140 (MQ=255)

                                                                                          ccAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGt                                             >  2:849256/1‑140 (MQ=255)

                                                                                          ccAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGt                                             >  1:16016/1‑140 (MQ=255)

                                                                                            aaaCTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGc                                           >  1:283644/1‑140 (MQ=255)

                                                                                            aaaCTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGc                                           >  1:53789/1‑140 (MQ=255)

                                                                                              aCTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGACAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCgg                                         >  2:2108769/1‑140 (MQ=255)

                                                                                               cTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGa                                        >  1:2034687/1‑140 (MQ=255)

                                                                                               cTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGa                                        >  1:1969439/1‑140 (MQ=255)

                                                                                               cTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGa                                        >  1:414173/1‑140 (MQ=255)

                                                                                                tGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGAt                                       <  2:16016/140‑1 (MQ=255)

                                                                                                tGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGAt                                       <  2:1969439/140‑1 (MQ=255)

                                                                                                tGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGAt                                       <  2:1440375/140‑1 (MQ=255)

                                                                                                tGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGAt                                       <  1:1060283/140‑1 (MQ=255)

                                                                                                  cGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCa                                                 >  2:149013/1‑128 (MQ=255)

                                                                                                  cGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATaa                                     >  1:1043581/1‑140 (MQ=255)

                                                                                                     gTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGt                                  >  1:338633/1‑140 (MQ=255)

                                                                                                       aTTCGCCTTCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCa                                <  1:849256/140‑1 (MQ=255)

                                                                                                              ttCGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGt                         <  1:857594/140‑1 (MQ=255)

                                                                                                                cGATTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGc                       >  1:216810/1‑140 (MQ=255)

                                                                                                                  aTTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAg                     <  2:2034687/140‑1 (MQ=255)

                                                                                                                  aTTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAg                     <  2:1526354/140‑1 (MQ=255)

                                                                                                                  aTTTCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAg                     <  1:660278/140‑1 (MQ=255)

                                                                                                                    ttCGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAgcg                   <  2:909827/140‑1 (MQ=255)

                                                                                                                      cGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGcc                 <  2:414173/140‑1 (MQ=255)

                                                                                                                      cGAAGTCGATAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGcc                 <  1:1608632/140‑1 (MQ=255)

                                                                                                                              aTAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGCCATCagaga         <  2:150597/140‑1 (MQ=255)

                                                                                                                              aTAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGCCATCagaga         <  1:1813835/140‑1 (MQ=255)

                                                                                                                              aTAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGCCATCagaga         <  1:1317840/140‑1 (MQ=255)

                                                                                                                               tAGCCAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGCCATCagagag        >  1:1522842/1‑140 (MQ=255)

                                                                                                                                   cAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCtt    <  1:322199/140‑1 (MQ=255)

                                                                                                                                   cAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCtt    <  2:787456/140‑1 (MQ=255)

                                                                                                                                   cAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCtt    <  1:1847116/140‑1 (MQ=255)

                                                                                                                                   cAGACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCtt    <  2:824117/140‑1 (MQ=255)

                                                                                                                                     gACAGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCg  <  2:1349041/140‑1 (MQ=255)

GCGTCACGGTAGGTGTGCAGTTTCTGAATTTTCTTCATGAAACGTTCTACCAGGTCAACAGCCAGGTCATCTACACGCGGATCATTGTTACCAAACTGCGGGTATTCGCCTTCGATTTCGAAGTCGATAGCCAGACCGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCG  >  NC_000913/951762‑952034

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A