Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	952,118	G→T	R479R (CGC→CGA)	pflB ←	pyruvate formate‑lyase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	952,118	0	G	T	99.3%	466.5 / ‑3.3	135	R479R (CGC→CGA)	pflB	pyruvate formate‑lyase
Reads supporting (aligned to +/- strand): ref base G (1/0); new base T (80/54); total (81/54)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.38e-01

Only 100 of 136 total aligned reads displayed.

CGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATGCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGTTTTCGCCAGGTTTGCACGCG  >  NC_000913/951983‑952251

cGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCt                                                                                                                                   >  2:120484/1‑140 (MQ=255)

cGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCt                                                                                                                                   >  2:1047446/1‑140 (MQ=255)

cGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCt                                                                                                                                   >  1:281365/1‑140 (MQ=255)

cGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCt                                                                                                                                   >  1:1464201/1‑140 (MQ=255)

   cATGGTGCGGATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCa                                                                                                                                >  1:411940/1‑140 (MQ=255)

   cATGGTGCGGATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCa                                                                                                                                >  2:2082943/1‑140 (MQ=255)

    aTGGTGCGGATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCAt                                                                                                                               <  2:34260/140‑1 (MQ=255)

    aTGGTGCGGATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCAt                                                                                                                               <  1:2005759/140‑1 (MQ=255)

      ggTGCGGATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCa                                                                                                                             >  1:308182/1‑140 (MQ=255)

      ggTGCGGATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCa                                                                                                                             <  1:1823892/140‑1 (MQ=255)

      ggTGCGGATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTAATTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCa                                                                                                                             <  2:1760913/140‑1 (MQ=255)

       gTGCGGATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCAc                                                                                                                            <  2:1522842/140‑1 (MQ=255)

       gTGCGGATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCAc                                                                                                                            >  1:1083348/1‑140 (MQ=255)

         gCGGATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACtt                                                                                                                          <  2:529590/140‑1 (MQ=255)

          cGGATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTtc                                                                                                                         >  1:1465814/1‑140 (MQ=255)

           ggATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTtct                                                                                                                        >  2:1232276/1‑139 (MQ=255)

             aTAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTtcatc                                                                                                                      >  1:683218/1‑140 (MQ=255)

             aTAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTtcatc                                                                                                                      >  2:2082664/1‑140 (MQ=255)

             aTAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTtcatc                                                                                                                      <  1:1364181/140‑1 (MQ=255)

             aTAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTtcatc                                                                                                                      >  2:1946235/1‑140 (MQ=255)

              tAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTtcatca                                                                                                                     <  1:1152895/140‑1 (MQ=255)

              tAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTtcatca                                                                                                                     <  1:799952/140‑1 (MQ=255)

              tAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTtcatca                                                                                                                     <  2:281365/140‑1 (MQ=255)

              tAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTtcatca                                                                                                                     <  2:1465814/140‑1 (MQ=255)

              tAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTtcatca                                                                                                                     <  2:1083348/140‑1 (MQ=255)

              aaaCGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTtcatca                                                                                                                     <  1:709177/139‑1 (MQ=255)

              aaaCGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTATACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTtcatca                                                                                                                     <  2:1770672/139‑1 (MQ=255)

                          cGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACa                                                                                                         <  2:966224/140‑1 (MQ=255)

                           gTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACAt                                                                                                        <  1:917926/140‑1 (MQ=255)

                                   ccATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTg                                                                                                >  1:664694/1‑140 (MQ=255)

                                    cATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGa                                                                                               <  1:2017785/140‑1 (MQ=255)

                                    cATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGa                                                                                               <  1:1946235/140‑1 (MQ=255)

                                     aTCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGAt                                                                                              <  1:1144482/140‑1 (MQ=255)

                                      tCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGGTc                                                                                             <  1:2082664/140‑1 (MQ=255)

                                      tCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATc                                                                                             >  2:1378954/1‑140 (MQ=255)

                                                         gTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCaa                                                                          >  2:1824139/1‑140 (MQ=255)

                                                          tACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAAc                                                                         >  1:2123817/1‑140 (MQ=255)

                                                            cTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCt                                                                       >  1:18092/1‑140 (MQ=255)

                                                               gTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCa                                                                    >  2:2093684/1‑140 (MQ=255)

                                                                    gCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTc                                                               >  2:930889/1‑140 (MQ=255)

                                                                    gCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGATCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTc                                                               >  1:650645/1‑140 (MQ=255)

                                                                       tGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGt                                                            >  2:667268/1‑140 (MQ=255)

                                                                                 gatgTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCaa                                                  >  2:491468/1‑140 (MQ=255)

                                                                                  atgTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAAc                                                 >  1:288685/1‑140 (MQ=255)

                                                                                  atgTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAAc                                                 >  1:313232/1‑140 (MQ=255)

                                                                                   tgTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAAcg                                                <  1:1360982/140‑1 (MQ=255)

                                                                                      tCAGAGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCTTTGTTTAGGACTTCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAAcgcct                                             >  2:673680/1‑139 (MQ=255)

                                                                                       cagtgcagtgATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAAcgccgc                                            <  1:1296855/140‑1 (MQ=255)

                                                                                        agtgcagtgATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAAcg                                                >  1:854617/1‑135 (MQ=255)

                                                                                        agtgcagtgATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAAcg                                                <  2:854617/135‑1 (MQ=255)

                                                                                        agtgcagtgATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACgccgcc                                           >  2:2005435/1‑140 (MQ=255)

                                                                                        agtgcagtgATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACgccgcc                                           >  1:2082954/1‑140 (MQ=255)

                                                                                        agtgcagtgATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACgccgcc                                           >  2:1437157/1‑140 (MQ=255)

                                                                                        agtgcagtgATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACgccgcc                                           >  2:2114950/1‑140 (MQ=255)

                                                                                          tgcagtgATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGt                                         <  1:522474/140‑1 (MQ=255)

                                                                                          tgcagtgATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGt                                         <  1:491468/140‑1 (MQ=255)

                                                                                            cagtgATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTg                                       >  1:1035537/1‑140 (MQ=255)

                                                                                            cagtgATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTg                                       <  1:2114950/140‑1 (MQ=255)

                                                                                             agtgATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGt                                         <  1:838053/137‑1 (MQ=255)

                                                                                             agtgATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGt                                         >  2:838053/1‑137 (MQ=255)

                                                                                             agtgATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGa                                      <  2:2011234/140‑1 (MQ=255)

                                                                                             agtgATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGa                                      <  2:2082954/140‑1 (MQ=255)

                                                                                             agtgATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGa                                      >  2:1756058/1‑140 (MQ=255)

                                                                                             agtgATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGa                                      >  1:680064/1‑140 (MQ=255)

                                                                                             agtgATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGa                                      <  2:411940/140‑1 (MQ=255)

                                                                                                 aTGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGc                                  >  2:299002/1‑140 (MQ=255)

                                                                                                 aTGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGc                                  >  1:1614229/1‑140 (MQ=255)

                                                                                                    tACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTa                               >  2:1215050/1‑140 (MQ=255)

                                                                                                    tACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTa                               >  2:1022198/1‑140 (MQ=255)

                                                                                                         tttAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGct                          >  2:1646096/1‑139 (MQ=255)

                                                                                                         tttAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCa                          <  2:1481170/140‑1 (MQ=255)

                                                                                                         tttAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCa                          <  2:283644/140‑1 (MQ=255)

                                                                                                         tttAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCa                          >  1:1481170/1‑140 (MQ=255)

                                                                                                         tttAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCa                          >  1:235134/1‑140 (MQ=255)

                                                                                                           tAGCCAGCCAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATg                        >  1:1900350/1‑140 (MQ=255)

                                                                                                            agccagccAGTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATgt                       >  2:1621278/1‑139 (MQ=255)

                                                                                                              ccagccagTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGtt                     <  2:683218/140‑1 (MQ=255)

                                                                                                              ccagccagTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGtt                     <  2:1900350/140‑1 (MQ=255)

                                                                                                              ccagccagTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGtt                     >  1:123339/1‑140 (MQ=255)

                                                                                                              ccagccagTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGtt                     <  1:1117700/140‑1 (MQ=255)

                                                                                                              ccagccagTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGtt                     <  2:1106839/140‑1 (MQ=255)

                                                                                                              ccagccagTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGtt                     >  2:1117700/1‑140 (MQ=255)

                                                                                                                 gccagTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGTTTTc                  >  2:550792/1‑140 (MQ=255)

                                                                                                                 gccagTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGTTTTc                  >  1:961053/1‑140 (MQ=255)

                                                                                                                 gccagTCCATGAAGTGATCCATGCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGTTTTc                  >  1:664309/1‑140 (MQ=255)

                                                                                                                  ccagTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGTTTTCg                 <  2:2123817/140‑1 (MQ=255)

                                                                                                                   cagTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGTTTTCGc                <  2:1464201/140‑1 (MQ=255)

                                                                                                                   cagTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGTTTTCGc                >  2:71514/1‑140 (MQ=255)

                                                                                                                   cagTCCATGAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGTTTTCGc                >  2:829631/1‑140 (MQ=255)

                                                                                                                           gAAGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGTTTTCGCCAGGTTTg        >  2:681804/1‑140 (MQ=255)

                                                                                                                             aGTGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGTTTTCGCCAGGTTTGCa      <  1:251787/140‑1 (MQ=255)

                                                                                                                               tGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGTTTTCGCCAGGTTTGCAcg    <  1:2013392/140‑1 (MQ=255)

                                                                                                                               tGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGTTTTCGCCAGGTTTGCAcg    <  1:1646096/140‑1 (MQ=255)

                                                                                                                               tGATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGTTTTCGCCAGGTTTGCAcg    <  1:1047446/140‑1 (MQ=255)

                                                                                                                                gATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGTTTTCGCCAGGTTTGCAcgc   >  1:895722/1‑140 (MQ=255)

                                                                                                                                gATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGTTTTCGCCAGGTTTGCAcgc   >  1:1722764/1‑140 (MQ=255)

                                                                                                                                gATCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGTTTTCGCCAGGTTTGCAcgc   >  1:1650360/1‑140 (MQ=255)

                                                                                                                                 aTCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGTTTTCGCCAGGTTTGCAcgcg  >  2:621005/1‑140 (MQ=255)

                                                                                                                                 aTCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGTTTTCGCCAGGTTTGCAcgcg  <  1:2086756/140‑1 (MQ=255)

                                                                                                                                 aTCCATTCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGTTTTCGCCAGGTTTGCAcgcg  >  1:1269950/1‑140 (MQ=255)

CGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGCCATCAGAGAGGCTTCGTAGCTGTACTTGTCGTGCATGTAGTGGATGATGTTCAGTGCAGTGATGTACTGTTTAGCCAGCCAGTCCATGAAGTGATCCATGCGCTCCATCACTTCATCATAGTTCAGGACATCGCCTTTGATCGGTTCAGACTTCGGACCAACCTGCATTTTCAGTTTTTCGTCAACGCCGCCGTTGATTGCGTACAGCATGGTTTTCGCCAGGTTTGCACGCG  >  NC_000913/951983‑952251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A