Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A18 F48 I1 R1 70 76.3 2572620 98.7% 2539175 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 695,299 G→T G67W (GGG→TGG)  ubiF → 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol hydroxylase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913695,2990GT97.2% 246.7 / 0.1 71G67W (GGG→TGG) ubiF2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol hydroxylase
Reads supporting (aligned to +/- strand):  ref base G (1/1);  new base T (22/47);  total (23/48)
Fisher's exact test for biased strand distribution p-value = 5.46e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.56e-01

CTGGGGCTGGCACAGCACGGATTTGCGGTAACGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTAGGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAACTTAAGCTACCGCTGCTTGGCTATATGGTGGAAAACA  >  NC_000913/695164‑695434
                                                                                                                                       |                                                                                                                                       
cTGGGGCTGGCACAGCACGGATTTGCGGTAACGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGt                                                                                                                                     <  2:169712/140‑1 (MQ=255)
   gggCTGGCACAGCACGGATTTGCGGTAACGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGTCGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTg                                                                                                                                  <  1:249113/140‑1 (MQ=255)
   gggCTGGCACAGCACGGATTTGCGGTAACGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATTATTGCTTAAAGGGTTATGGGTCTg                                                                                                                                  <  1:1143289/140‑1 (MQ=255)
     gCTGGCACAGCACGGATTTGCGGTAACGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTggg                                                                                                                                <  1:1269745/140‑1 (MQ=255)
       tGGCACAGCACGGATTTGCGGTAACGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGAt                                                                                                                              <  1:189909/140‑1 (MQ=255)
        ggCACAGCACGGATTTGCGGTAACGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATg                                                                                                                             <  1:547207/140‑1 (MQ=255)
        ggCACAGCACGGATTTGCGGTAACGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATg                                                                                                                             >  1:1130387/1‑140 (MQ=255)
        ggCACAGCACGGATTTGCGGTAACGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATg                                                                                                                             <  2:269997/140‑1 (MQ=255)
        ggCACAGCACGGATTTGCGGTAACGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTAGGGGTCTGGGATg                                                                                                                             <  2:205209/140‑1 (MQ=255)
             aGCACGGATTTGCGGTAACGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTa                                                                                                                        <  2:1076517/140‑1 (MQ=255)
              gCACGGATTTGCGGTAACGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTAc                                                                                                                       <  2:1049832/140‑1 (MQ=255)
                   gATTTGCGGTAACGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCt                                                                                                                  <  2:1130387/140‑1 (MQ=255)
                   gATTTGCGGTAACGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTAGGGGTCTGGGATGCAGTACAGGCt                                                                                                                  >  1:1091980/1‑140 (MQ=255)
                     tttGCGGTAACGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTAt                                                                                                                <  2:690446/140‑1 (MQ=255)
                      ttGCGGTAACGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATg                                                                                                               <  1:519123/140‑1 (MQ=255)
                      ttGCGGTAACGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATg                                                                                                               <  1:354983/140‑1 (MQ=255)
                        gCGGTAACGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCg                                                                                                             <  2:770747/140‑1 (MQ=255)
                         cGGTAACGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGt                                                                                                            >  2:1081652/1‑140 (MQ=255)
                             aaCGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGcc                                                                                                        <  2:520601/140‑1 (MQ=255)
                             aaCGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGcc                                                                                                        <  1:284092/140‑1 (MQ=255)
                             aaCGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGcc                                                                                                        <  1:584060/140‑1 (MQ=255)
                             aaCGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGcc                                                                                                        <  1:1063608/140‑1 (MQ=255)
                              aCGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCa                                                                                                       >  1:590008/1‑140 (MQ=255)
                                       gAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCg                                                                                              <  2:772739/140‑1 (MQ=255)
                                         gCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCa                                                                                            <  2:992672/140‑1 (MQ=255)
                                          cACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCa                                                                                            <  1:1197057/139‑1 (MQ=255)
                                          cACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCa                                                                                            >  2:1197057/1‑139 (MQ=255)
                                          cACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAg                                                                                           >  2:632805/1‑140 (MQ=255)
                                          cACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAg                                                                                           >  1:700237/1‑140 (MQ=255)
                                             gCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACt                                                                                        <  1:632805/140‑1 (MQ=255)
                                                           gTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACgtgggagt                                                                          >  1:43997/1‑140 (MQ=255)
                                                               gTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACgtgggagtggga                                                                      <  1:313998/140‑1 (MQ=255)
                                                                  gCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAAc                                                                   <  1:1081652/140‑1 (MQ=255)
                                                                  gCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAAc                                                                   <  1:285903/140‑1 (MQ=255)
                                                                   cTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACg                                                                  >  1:1246065/1‑140 (MQ=255)
                                                                    tGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACgg                                                                 <  1:6630/140‑1 (MQ=255)
                                                                      aTAGCCAACCGGACGTGCGGATCTTGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGgcg                                                               >  1:1034755/1‑140 (MQ=255)
                                                                      aTAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGgcg                                                               <  2:326448/140‑1 (MQ=255)
                                                                      aTAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGgcg                                                               <  2:1234485/140‑1 (MQ=255)
                                                                      aTAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGgcg                                                               >  2:1187060/1‑140 (MQ=255)
                                                                        aGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCa                                                             <  1:1175828/140‑1 (MQ=255)
                                                                          ccAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCAtg                                                           <  2:590008/140‑1 (MQ=255)
                                                                              ccGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATgtggt                                                       >  1:401996/1‑140 (MQ=255)
                                                                                 gACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGtt                                                    >  2:1020145/1‑140 (MQ=255)
                                                                                  aCGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGttt                                                   >  1:479203/1‑140 (MQ=255)
                                                                                       cGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGAcgc                                              <  1:485381/140‑1 (MQ=255)
                                                                                         gATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGAcgccg                                            <  2:700237/140‑1 (MQ=255)
                                                                                               ggCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAAc                                      >  1:1271964/1‑140 (MQ=255)
                                                                                                gCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAACt                                     <  1:442228/140‑1 (MQ=255)
                                                                                                gCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAACt                                     >  1:557853/1‑140 (MQ=255)
                                                                                                    tCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAACTTAAg                                 >  2:1147729/1‑140 (MQ=255)
                                                                                                          cgGCTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAACTTAAGCTACCg                           <  1:1221282/140‑1 (MQ=255)
                                                                                                             cTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGTGCATGTGGTGTTTGACGCCGCTGAACTTAAGCTACCgctg                        <  1:67988/140‑1 (MQ=255)
                                                                                                             cTTCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAACTTAAGCTACCgctg                        <  2:479203/140‑1 (MQ=255)
                                                                                                               tCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAACTTAAGCTACCgctgct                      <  1:858142/140‑1 (MQ=255)
                                                                                                               tCGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAACTTAAGCTACCgctgct                      <  1:509921/140‑1 (MQ=255)
                                                                                                                cGGTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAACTTAAGCTACCGCTGCtt                     >  1:221570/1‑140 (MQ=255)
                                                                                                                  gTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAACTTAAGCTACCGCTGCTTgg                   >  1:486765/1‑140 (MQ=255)
                                                                                                                  gTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAACTTAAGCTACCGCTGCTTgg                   >  2:266944/1‑140 (MQ=255)
                                                                                                                  gTATCATTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAACTTAAGCTACCGCTGCTTgg                   >  2:1080103/1‑140 (MQ=255)
                                                                                                                       aTTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAACTTAAGCTACCGCTGCTTGGCtata              >  1:522202/1‑140 (MQ=255)
                                                                                                                       aTTGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAACTTAAGCTACCGCTGCTTGGCtata              <  2:647592/140‑1 (MQ=255)
                                                                                                                         tGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAACTTAAGCTACCGCTGCTTGGCTATAtg            <  2:245076/140‑1 (MQ=255)
                                                                                                                         tGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAACTTAAGCTACCGCTGCTTGGCTATAtg            <  2:945541/140‑1 (MQ=255)
                                                                                                                         tGCTTAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAACTTAAGCTACCGCTGCTTGGCTATAtg            <  1:156551/140‑1 (MQ=255)
                                                                                                                            ttAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTACCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAACTTAAGCTACCGCTGCTTGGCTATAtggtg         <  1:1166457/140‑1 (MQ=255)
                                                                                                                             tAAAGGGTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAACTTAAGCTACCGCTGCTTGGCTATAtggtgg        >  2:389515/1‑140 (MQ=255)
                                                                                                                                 gggTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAACTTAAGCTACCGCTGCTTGGCTATATGGTGGaaaa    <  1:1187060/140‑1 (MQ=255)
                                                                                                                                   gTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAACTTAAGCTACCGCTGCTTGGCTATATGGTGGAAAaca  <  1:389515/140‑1 (MQ=255)
                                                                                                                                   gTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAACTTAAGCTACCGCTGCTTGGCTATATGGTGGAAAaca  <  2:43997/140‑1 (MQ=255)
                                                                                                                                   gTTATGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAACTTAAGCTACCGCTGCTTGGCTATATGGTGGAAAaca  <  2:844399/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                       
CTGGGGCTGGCACAGCACGGATTTGCGGTAACGGTGATCGAGCACGCAGAACCAGCGCCGTTTGTCGCTGATAGCCAACCGGACGTGCGGATCTCGGCGATCAGCGCGGCTTCGGTATCATTGCTTAAAGGGTTAGGGGTCTGGGATGCAGTACAGGCTATGCGTTGCCATCCTTACCGCAGACTGGAAACGTGGGAGTGGGAAACGGCGCATGTGGTGTTTGACGCCGCTGAACTTAAGCTACCGCTGCTTGGCTATATGGTGGAAAACA  >  NC_000913/695164‑695434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A