Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A18 F48 I1 R1	70	76.3	2572620	98.7%	2539175	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	768,319	G→A	A114A (GCG→GCA)	mngB →	alpha‑mannosidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	768,319	0	G	A	100.0%	285.7 / NA	83	A114A (GCG→GCA)	mngB	alpha‑mannosidase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (38/45); total (38/45)

ACCGTGTGAAGAAACAGGTAGAAGCCGGCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCGTTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGATTTGGCATTACCCGCACCATGTTCTGGCGCGGATGTTCGGAGCGCCACGGTACTG  >  NC_000913/768189‑768452

aCCGTGTGAAGAAACAGGTAGAAGCCGGCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAg                                                                                                                              <  2:141493/140‑1 (MQ=255)

aCCGTGTGAAGAAACAGGTAGAAGCCGGCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAg                                                                                                                              <  1:312805/140‑1 (MQ=255)

aCCGTGTGAAGAAACAGGTAGAAGCCGGCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAg                                                                                                                              <  2:1103738/140‑1 (MQ=255)

 ccGTGTGAAGAAACAGGTAGAAGCCGGCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGc                                                                                                                             >  2:138080/1‑140 (MQ=255)

   gtgtGAAGAAACAGGTAGAAGCCGGCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCg                                                                                                                           <  2:1101527/140‑1 (MQ=255)

    tgtgAAGAAACAGGTAGAAGCCGGCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCgt                                                                                                                          >  2:978974/1‑139 (MQ=255)

     gtgAAGAAACAGGTAGAAGCCGGCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGAt                                                                                                                         >  1:85663/1‑140 (MQ=255)

      tgAAGAAACAGGTAGAAGCCGGCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATg                                                                                                                        >  1:1012403/1‑140 (MQ=255)

         agaaACAGGTAGAAGCCGGCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGaaa                                                                                                                     <  1:1253145/140‑1 (MQ=255)

           aaaCAGGTAGAAGCCGGCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAAt                                                                                                                   <  1:37825/140‑1 (MQ=255)

            aaCAGGTAGAAGCCGGCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATa                                                                                                                  <  1:629253/140‑1 (MQ=255)

            aaCAGGTAGAAGCCGGCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATa                                                                                                                  <  1:590921/140‑1 (MQ=255)

              cAGGTAGAAGCCGGCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAgg                                                                                                                <  1:74014/140‑1 (MQ=255)

              cAGGTAGAAGCCGGCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAgg                                                                                                                >  1:733328/1‑140 (MQ=255)

              aaGGTAGAAGCCGGCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGACGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAgg                                                                                                                <  1:1147336/139‑1 (MQ=255)

                ggTAGAAGCCGGCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGtt                                                                                                              >  2:559314/1‑140 (MQ=255)

                  gaGAAGCCGGCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATCCCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTAt                                                                                                            <  2:581460/139‑1 (MQ=255)

                      aGCCGGCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTAc                                                                                                        <  2:152558/140‑1 (MQ=255)

                       gCCGGCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTAcc                                                                                                       >  1:382087/1‑140 (MQ=255)

                       gCCGGCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTAcc                                                                                                       >  1:1095674/1‑140 (MQ=255)

                         cGGCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAg                                                                                                     >  1:1242836/1‑140 (MQ=255)

                          ggCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGa                                                                                                    <  2:537304/140‑1 (MQ=255)

                          ggCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGa                                                                                                    >  2:760293/1‑140 (MQ=255)

                          agCAAGTTGATTATCGGCCCCGGTTATTCCAAAACCGATACCACGATTGTATTGGCGGAATCCATTGTCCGTAATCTGATGTACGAAATGCGTCACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGa                                                                                                    <  2:152974/139‑1 (MQ=255)

                           gCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGAt                                                                                                   >  2:1147520/1‑140 (MQ=255)

                               gTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCt                                                                                               <  2:539330/140‑1 (MQ=255)

                                    ttATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCACATTCCTTTGGc                                                                                          <  2:1012403/140‑1 (MQ=255)

                                     tATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCa                                                                                         >  2:467346/1‑140 (MQ=255)

                                     tATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCa                                                                                         >  2:168895/1‑140 (MQ=255)

                                      aTCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCAt                                                                                        <  2:905930/140‑1 (MQ=255)

                                      aTCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCAt                                                                                        <  2:512118/140‑1 (MQ=255)

                                      aTCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCAt                                                                                        <  1:1269760/140‑1 (MQ=255)

                                      aTCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCAt                                                                                        <  2:812359/140‑1 (MQ=255)

                                          gCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTcc                                                                                    >  2:479334/1‑140 (MQ=255)

                                                ggTATACCCAGACGGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCaa                                                                              <  2:732078/140‑1 (MQ=255)

                                                    taCCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGc                                                                          <  1:467346/140‑1 (MQ=255)

                                                    taCCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGc                                                                          <  1:168895/140‑1 (MQ=255)

                                                    taCCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGc                                                                          <  2:733328/140‑1 (MQ=255)

                                                     aCCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGcc                                                                         >  2:980620/1‑140 (MQ=255)

                                                     aCCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGcc                                                                         >  2:1221095/1‑140 (MQ=255)

                                                     aCCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGcc                                                                         >  2:788579/1‑140 (MQ=255)

                                                      cccAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCg                                                                        <  1:395857/140‑1 (MQ=255)

                                                       ccAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGc                                                                       <  2:1242836/140‑1 (MQ=255)

                                                         aGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCat                                                                     <  1:452453/140‑1 (MQ=255)

                                                         aGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCat                                                                     <  1:503020/140‑1 (MQ=255)

                                                           aCCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCatat                                                                   >  1:87743/1‑140 (MQ=255)

                                                           aCCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCatat                                                                   >  2:419468/1‑140 (MQ=255)

                                                           aCCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCatat                                                                   <  2:11005/140‑1 (MQ=255)

                                                           aCCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCatat                                                                   >  1:1281155/1‑140 (MQ=255)

                                                           aCCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCatat                                                                   >  1:516709/1‑140 (MQ=255)

                                                           aCCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCatat                                                                   >  2:86709/1‑140 (MQ=255)

                                                           aCCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCatat                                                                   <  2:903380/140‑1 (MQ=255)

                                                           aCCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCatat                                                                   >  1:716330/1‑140 (MQ=255)

                                                           aCCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCatat                                                                   >  2:932193/1‑140 (MQ=255)

                                                                tACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACa                                                              <  1:932193/140‑1 (MQ=255)

                                                                tACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACa                                                              >  1:649945/1‑140 (MQ=255)

                                                                tACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACa                                                              <  2:85663/140‑1 (MQ=255)

                                                                tACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACa                                                              >  2:808842/1‑140 (MQ=255)

                                                                     cGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGa                                                         >  1:862775/1‑140 (MQ=255)

                                                                      gtttGTTTCTGCGGAATCAATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCTTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGAt                                                        <  2:145027/138‑1 (MQ=255)

                                                                      gATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGAt                                                        <  1:760293/140‑1 (MQ=255)

                                                                      gATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGAt                                                        <  1:138080/140‑1 (MQ=255)

                                                                      gATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGAt                                                        <  2:104763/140‑1 (MQ=255)

                                                                      aaTTGTTTCTGCGGAATCCATCGTCCGAAATCTGATGTACGGAATGCGTGTCTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGAt                                                        <  2:1162617/139‑1 (MQ=255)

                                                                       aTTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGAtt                                                       >  1:75666/1‑140 (MQ=255)

                                                                           tttCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGATTTGGc                                                   <  1:875329/140‑1 (MQ=255)

                                                                                   gAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGATTTGGCATTACCCg                                           <  2:1225224/140‑1 (MQ=255)

                                                                                     aTCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGATTTGGCATTACCCGCa                                         <  1:419468/140‑1 (MQ=255)

                                                                                     aTCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGATTTGGCATTACCCGCa                                         <  1:978974/140‑1 (MQ=255)

                                                                                                gTAATCTGATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGATTTGGCATTACCCGCACCATGTTCTgg                              >  1:487829/1‑140 (MQ=255)

                                                                                                       gATGTACGGAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGATTTGGCATTACCCGCACCATGTTCTGGCGCGGAt                       >  1:621701/1‑140 (MQ=255)

                                                                                                               gAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGATTTGGCATTACCCGCACCATGTTCTGGCGCGGATGTTCGGAg               <  1:980620/140‑1 (MQ=255)

                                                                                                               gAATGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGATTTGGCATTACCCGCACCATGTTCTGGCGCGGATGTTCGGAg               <  1:86709/140‑1 (MQ=255)

                                                                                                                aaTGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGATTTGGCATTACCCGCACCATGTTCTGGCGCGGATGTTCGGAgc              >  1:310490/1‑140 (MQ=255)

                                                                                                                  tGCGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGATTTGGCATTACCCGCACCATGTTCTGGCGCGGATGTTCGGAgcgc            >  2:1033812/1‑140 (MQ=255)

                                                                                                                    cGTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGATTTGGCATTACCCGCACCATGTTCTGGCGCGGATGTTCGGAGCGCCa          <  1:1033812/140‑1 (MQ=255)

                                                                                                                     gTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGATTTGGCATTACCCGCACCATGTTCTGGCGCGGATGTTCGGAGCGCCAc         >  1:692657/1‑140 (MQ=255)

                                                                                                                     gTGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGATTTGGCATTACCCGCACCATGTTCTGGCGCGGATGTTCGGAGCGCCAc         >  1:1259883/1‑140 (MQ=255)

                                                                                                                      tGACTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGATTTGGCATTACCCGCACCATGTTCTGGCGCGGATGTTCGGAGCGCCACg        <  1:788579/140‑1 (MQ=255)

                                                                                                                        aCTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGATTTGGCATTACCCGCACCATGTTCTGGCGCGGATGTTCGGAGCGCCACGGt      <  1:808842/140‑1 (MQ=255)

                                                                                                                         cTGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGATTTGGCATTACCCGCACCATGTTCTGGCGCGGATGTTCGGAGCGCCACGGTa     <  2:649945/140‑1 (MQ=255)

                                                                                                                          tGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCTGGCAACTGCCGCATATCTGCAAGGGATTTGGCATTACCCGCACCATGTTCTGGCGCGGATGTTCGGAGCGCCACGGTAc    >  1:878316/1‑140 (MQ=255)

                                                                                                                          tGCCTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGATTTGGCATTACCCGCACCATGTTCTGGCGCGGATGTTCGGAGCGCCACGGTAc    >  2:631090/1‑140 (MQ=255)

                                                                                                                            ccTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGTCATGTCCGGGCAACTGCCGCATATCTACAATGGATTTGGCATTACCCGCACCATGTTCTGGCGCGGATGTTCGGAGCGCCACGGTACtt  >  2:1181410/1‑139 (MQ=255)

                                                                                                                            ccTCGCATTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGATTTGGCATTACCCGCACCATGTTCTGGCGCGGATGTTCGGAGCGCCACGGTACtt  >  2:379800/1‑139 (MQ=255)

ACCGTGTGAAGAAACAGGTAGAAGCCGGCAAGTTGATTATCGGCCCCTGGTATACCCAGACCGATACCACGATTGTTTCTGCGGAATCCATCGTCCGTAATCTGATGTACGGAATGCGTGACTGCCTCGCGTTTGGCGAGCCGATGAAAATAGGTTATTTACCAGATTCCTTTGGCATGTCCGGGCAACTGCCGCATATCTACAATGGATTTGGCATTACCCGCACCATGTTCTGGCGCGGATGTTCGGAGCGCCACGGTACTG  >  NC_000913/768189‑768452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A