Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F48 I1 R1
|
82 |
50.4 |
1709896 |
99.0% |
1692797 |
139.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
257,908 |
Δ776 bp |
|
insB9–[crl] |
insB9, insA9, [crl] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
257908–258675 |
258683 |
9–776 |
31 [0] |
[0] 31 |
insB9–[crl] |
insB9,insA9,[crl] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 257907 | 0 (0.000) | 30 (0.630) |
25/262 |
0.7 |
100% |
intergenic (+8/+16) |
crl/insB9 |
RNA polymerase holoenzyme assembly factor Crl/IS1 transposase B |
| ? | NC_000913 |
258684 = |
0 (0.000) | pseudogene (9/331 nt) |
crl |
RNA polymerase holoenzyme assembly factor Crl |
GATK/CNVnator alignment
N/A
