Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F48 I1 R1 79 90.7 3162666 99.0% 3131039 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 278,654 C→A R50L (CGC→CTC)  afuC ← CP4‑6 prophage; ABC transporter ATP‑binding protein AfuC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913278,6540CA100.0% 267.7 / NA 77R50L (CGC→CTC) afuCCP4‑6 prophage; ABC transporter ATP‑binding protein AfuC
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (46/31);  total (46/31)

CGACATATGCGGGAACAGGGCATAGGACTGAAACACCATACAGATATCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAA  >  NC_000913/278521‑278787
                                                                                                                                     |                                                                                                                                     
cGACATATGCGGGAACAGGGCATAGGACTGAAACACCATACAGATATCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCaaaa                                                                                                                                 >  2:321417/1‑140 (MQ=255)
  aCATATGCGGGAACAGGGCATAGGACTGAAACACCATACAGATATCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATa                                                                                                                               >  1:339418/1‑140 (MQ=255)
    atatGCGGGAACAGGGCATAGGACTGAAACACCATACAGATATCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGt                                                                                                                             >  1:1020271/1‑140 (MQ=255)
           ggAACAGGGCATAGGACTGAAACACCATACAGATATCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTg                                                                                                                      >  1:577625/1‑140 (MQ=255)
             aaCAGGGCATAGGACTGAAACACCATACAGATATCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGcc                                                                                                                    <  1:1078942/140‑1 (MQ=255)
             aaCAGGGCATAGGACTGAAACACCATACAGATATCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGcc                                                                                                                    >  2:1364014/1‑140 (MQ=255)
              aCAGGGCATAGGACTGAAACACCATACAGATATCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCg                                                                                                                   >  2:639946/1‑140 (MQ=255)
                 gggCATAGGACTGAAACACCATACAGATATCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAg                                                                                                                >  2:901244/1‑140 (MQ=255)
                  ggCATAGGACTGAAACACCATACAGATATCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGc                                                                                                               >  1:212359/1‑140 (MQ=255)
                     aTAGGACTGAAACACCATACAGATATCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCgg                                                                                                            <  2:486225/140‑1 (MQ=255)
                      tAGGACTGAAACACCATACAGATATCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGa                                                                                                           >  2:628713/1‑140 (MQ=255)
                       aGGACTGAAACACCATACAGATATCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGAc                                                                                                          >  1:103546/1‑140 (MQ=255)
                              aaaCACCATACAGATATCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGa                                                                                                   <  2:339418/140‑1 (MQ=255)
                               aaCACCATACAGATATCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGag                                                                                                  <  2:1274113/140‑1 (MQ=255)
                                   ccATACAGATATCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGagcagc                                                                                              >  1:1082347/1‑140 (MQ=255)
                                    cATACAGATATCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCg                                                                                             >  1:739189/1‑140 (MQ=255)
                                      tACAGATATCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTc                                                                                           >  2:874810/1‑140 (MQ=255)
                                        cAGATATCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCAc                                                                                         >  1:1255447/1‑140 (MQ=255)
                                        cAGATATCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCAc                                                                                         >  2:249568/1‑140 (MQ=255)
                                        cAGATATCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCAc                                                                                         >  2:394608/1‑140 (MQ=255)
                                        cAGATATCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCAc                                                                                         >  2:37474/1‑140 (MQ=255)
                                           atatCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGt                                                                                            <  1:672662/134‑1 (MQ=255)
                                           atatCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGt                                                                                            >  2:672662/1‑134 (MQ=255)
                                               cgcgCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGAGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGc                                                                                  >  1:216402/1‑140 (MQ=255)
                                                gcgcTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGcc                                                                                 >  2:421056/1‑140 (MQ=255)
                                                 cgcTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGccc                                                                                >  2:87122/1‑140 (MQ=255)
                                                 cgcTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGccc                                                                                <  2:1255447/140‑1 (MQ=255)
                                                     gctgAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGc                                                                            >  1:689313/1‑140 (MQ=255)
                                                      ctgAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCg                                                                           >  2:1384576/1‑140 (MQ=255)
                                                        gAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCggg                                                                         <  1:1549058/140‑1 (MQ=255)
                                                        gAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCggg                                                                         <  1:321417/140‑1 (MQ=255)
                                                             gagCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGt                                                                    <  2:577625/140‑1 (MQ=255)
                                                             gagCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGt                                                                    <  2:1114897/140‑1 (MQ=255)
                                                             gagCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGt                                                                    <  2:1020271/140‑1 (MQ=255)
                                                             gagCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGt                                                                    <  1:249568/140‑1 (MQ=255)
                                                             gagCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGt                                                                    <  2:853639/140‑1 (MQ=255)
                                                             gagCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGGTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGt                                                                    <  2:621363/140‑1 (MQ=255)
                                                              agCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTg                                                                   >  2:652890/1‑140 (MQ=255)
                                                                cGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAg                                                                 >  2:1129386/1‑140 (MQ=255)
                                                                cGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAg                                                                 >  1:1297514/1‑140 (MQ=255)
                                                                cGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAg                                                                 >  2:274898/1‑140 (MQ=255)
                                                                cGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAg                                                                 >  2:759637/1‑140 (MQ=255)
                                                                cGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGAACTGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAg                                                                 >  1:1337698/1‑140 (MQ=255)
                                                                   tGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGtt                                                              >  1:1220751/1‑140 (MQ=255)
                                                                   tGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGtt                                                              >  1:272999/1‑140 (MQ=255)
                                                                   tGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGtt                                                              >  1:1238615/1‑140 (MQ=255)
                                                                   tGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGCTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGTCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGtt                                                              >  1:1362094/1‑140 (MQ=255)
                                                                        gACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGatat                                                         >  2:725793/1‑140 (MQ=255)
                                                                         aCGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATAtt                                                        <  2:263021/140‑1 (MQ=255)
                                                                              ttCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGa                                                   >  2:231332/1‑140 (MQ=255)
                                                                               tCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGAt                                                  <  1:901244/140‑1 (MQ=255)
                                                                               tCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGAt                                                  <  1:652890/140‑1 (MQ=255)
                                                                               tCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGAt                                                  <  2:689313/140‑1 (MQ=255)
                                                                               tCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGAt                                                  <  2:1082347/140‑1 (MQ=255)
                                                                               tCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGAt                                                  <  2:739189/140‑1 (MQ=255)
                                                                               tCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGAACTGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGAt                                                  <  2:1337698/140‑1 (MQ=255)
                                                                                cGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGAtt                                                 <  1:421056/140‑1 (MQ=255)
                                                                                cGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGAtt                                                 >  1:828785/1‑140 (MQ=255)
                                                                                      cAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTa                                           >  2:386609/1‑140 (MQ=255)
                                                                                       aaTGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTAt                                          <  2:1238615/140‑1 (MQ=255)
                                                                                        aTGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTAtt                                         >  2:1271269/1‑140 (MQ=255)
                                                                                             aaTTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCC‑GCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGcc                                   >  1:800523/1‑140 (MQ=255)
                                                                                                 tGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCaaa                                <  2:1011745/140‑1 (MQ=255)
                                                                                                  gCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAAt                               >  2:572292/1‑140 (MQ=255)
                                                                                                   cccTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATc                              >  1:1576855/1‑140 (MQ=255)
                                                                                                   cccTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATc                              >  2:1397426/1‑140 (MQ=255)
                                                                                                    ccTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCg                             <  1:274898/140‑1 (MQ=255)
                                                                                                         gCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAg                        <  1:639946/140‑1 (MQ=255)
                                                                                                         gCTCGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAg                        <  1:1384576/140‑1 (MQ=255)
                                                                                                            cGGTTTTTCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGa                     <  1:1312866/140‑1 (MQ=255)
                                                                                                                  ttCCAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTgc               >  2:1360595/1‑140 (MQ=255)
                                                                                                                    ccAGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTgcgc             >  1:978943/1‑140 (MQ=255)
                                                                                                                      aGCCCGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAg           <  1:87122/140‑1 (MQ=255)
                                                                                                                         ccGGCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTc        >  1:613117/1‑140 (MQ=255)
                                                                                                                           ggCAACCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCaa      <  2:1297514/140‑1 (MQ=255)
                                                                                                                             cAACCAGTAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACg    >  2:407145/1‑140 (MQ=255)
                                                                                                                               aCCAGGAGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGaa  <  1:231332/140‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                     
CGACATATGCGGGAACAGGGCATAGGACTGAAACACCATACAGATATCGCGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAA  >  NC_000913/278521‑278787

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A