Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 281,031 C→A G318V (GGG→GTG)  yagA ← CP4‑6 prophage; integrase core domain‑containing protein YagA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913281,0310CA100.0% 171.1 / NA 51G318V (GGG→GTG) yagACP4‑6 prophage; integrase core domain‑containing protein YagA
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (28/23);  total (28/23)

ACCACCACACCTCGTAGCTGCCGTCTTCCTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCCCTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTGACGGCTGATACCGCGAGCCCGGTACCGCCATATCCAGCGCCTCGTGCGGGCGTTCAAGGTTATAGACCGTCCGCCAGTGGTCGAAGG  >  NC_000913/280894‑281166
                                                                                                                                           |                                                                                                                                       
accaccACACCTCGTAGCTGCCGTCTTCCTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACt                                                                                                                                       <  1:1961431/140‑1 (MQ=255)
accaccACACCTCGTAGCTGCCGTCTTCCTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACt                                                                                                                                       <  2:1807720/140‑1 (MQ=255)
   accacACCTCGTAGCTGCCGTCTTCCTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCa                                                                                                                                    <  1:1301584/140‑1 (MQ=255)
       cacCTCGTAGCTGCCGTCTTCCTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGt                                                                                                                                >  1:2076836/1‑140 (MQ=255)
       cacCTCGTAGCTGCCGTCTTCCTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGt                                                                                                                                >  1:1381952/1‑140 (MQ=255)
        acCTCGTAGCTGCCGTCTTCCTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCGTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTa                                                                                                                               >  2:1431082/1‑140 (MQ=255)
         ccTCGTAGCTGCCGTCTTCCTGCATTTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTAt                                                                                                                              >  2:1047962/1‑140 (MQ=255)
         ccTCGTAGCTGCCGTCTTCCTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTAt                                                                                                                              >  1:140025/1‑140 (MQ=255)
         ccTCGTAGCTGCCGTCTTCCTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTAt                                                                                                                              >  2:453719/1‑140 (MQ=255)
         ccTCGTAGCTGCCGTCTTCCTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTAt                                                                                                                              <  2:296006/140‑1 (MQ=255)
            cGTAGCTGCCGTCTTCCTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACt                                                                                                                                       <  1:1571240/128‑1 (MQ=255)
            cGTAGCTGCCGTCTTCCTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACt                                                                                                                                       >  2:1571240/1‑128 (MQ=255)
            cGTAGCTGCCGTCTTCCTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTcc                                                                                                                           >  1:1778311/1‑140 (MQ=255)
            cGTAGCTGCCGTCTTCCTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTcc                                                                                                                           >  1:1167277/1‑140 (MQ=255)
              tAGCTGCCGTCTTCCTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCgg                                                                                                                         <  1:1903076/140‑1 (MQ=255)
                 cTGCCGTCTTCCTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCTGCGCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCggg                                                                                                                        >  2:1616055/1‑140 (MQ=255)
                   gCCGTCTTCCTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCg                                                                                                                    <  1:1304387/140‑1 (MQ=255)
                            cTGCATTTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGc                                                                                                           <  1:1047962/140‑1 (MQ=255)
                            cTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGc                                                                                                           <  2:94518/140‑1 (MQ=255)
                            cTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGc                                                                                                           <  2:1522585/140‑1 (MQ=255)
                            cTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGc                                                                                                           <  2:1438119/140‑1 (MQ=255)
                            cTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGc                                                                                                           <  2:812393/140‑1 (MQ=255)
                            cTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGc                                                                                                           <  1:453719/140‑1 (MQ=255)
                            cTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGc                                                                                                           <  1:1431082/140‑1 (MQ=255)
                            cTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGc                                                                                                           <  1:1749422/140‑1 (MQ=255)
                              gCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCg                                                                                                         <  2:2076836/140‑1 (MQ=255)
                              gCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCg                                                                                                         >  2:1214593/1‑140 (MQ=255)
                              gCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCg                                                                                                         <  1:1899787/140‑1 (MQ=255)
                                    ccTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTAc                                                                                                   >  1:71418/1‑140 (MQ=255)
                                          gCCCGACCCGTTCTCCCCTGAACGCCTTGCCTGCGCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGcc                                                                                               <  1:1616055/140‑1 (MQ=255)
                                          gCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCcgc                                                                                             >  1:293375/1‑140 (MQ=255)
                                          gCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCcgc                                                                                             >  1:1839093/1‑140 (MQ=255)
                                          gCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCcgc                                                                                             >  1:770258/1‑140 (MQ=255)
                                           cccGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCcgcg                                                                                            <  2:140025/140‑1 (MQ=255)
                                              gACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTg                                                                                         <  1:1214593/140‑1 (MQ=255)
                                              gACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTg                                                                                         <  2:854379/140‑1 (MQ=255)
                                                              aaCGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTGACGGCTGATACCGCGa                                                                         >  1:336975/1‑140 (MQ=255)
                                                              aaCGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTGACGGCTGATACCGCGa                                                                         >  1:852823/1‑140 (MQ=255)
                                                              aaCGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTGACGGCTGATACCGCGa                                                                         >  1:2083137/1‑140 (MQ=255)
                                                               aCGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTGACGGCTGATACCGCGAg                                                                        <  2:1980720/140‑1 (MQ=255)
                                                                 gCCTTGCCT‑‑GCGCTCAGACTTCCCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTGACGGCTGATCCCGCGAGcc                                                                      <  1:1573899/140‑1 (MQ=255)
                                                                 cccTTGCCT‑‑GCGCTCAGACTTCCCCCTTTCACGCTCACCTTTCCGCTGATATCCTCTTCCCTGCCCATCCCCCCTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTGACGGCTGATACCGCGAGcc                                                                      <  2:2083137/139‑1 (MQ=255)
                                                                   cTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTGACGGCTGATACCGCGAGCCCg                                                                    >  1:1794932/1‑140 (MQ=255)
                                                                   cTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTGACGGCTGATACCGCGAGCCCg                                                                    >  1:884687/1‑140 (MQ=255)
                                                                   cTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTGACGGCTGATACCGCGAGCCCg                                                                    >  1:144967/1‑140 (MQ=255)
                                                                   cTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTGACGGCTGATACCGCGAGCCCg                                                                    >  1:132354/1‑140 (MQ=255)
                                                                    ttGCCT‑‑GCGCTCAGACTTCCCCCTTCCACGCTCAGTTTCCCGCTGATATCCTCTTCCCTCACCACCCCCACTTCATCGTTTCCGGGGGGCGTTGTGTTCCCGCTGTCCTGCCGCGCTGACGGCTGATCCCGCGAGCCCgg                                                                   <  2:228476/140‑1 (MQ=255)
                                                                           ggcgcTCAGCCTTCCCCCTTCCCCGCTCGGTTTCCCGCTGATATCCTCTTTCCTAACCATCCCCACTTCATCGTATCCGGGGGGCGTTGTGTTGCCGCTGTACTCCCGCGCTGCGGGCTGATCCCGCGAGCCGGGTACCg                                                              <  2:71418/139‑1 (MQ=255)
                                                                             agcTCAGACTTCCCCCTTTCACGCTCAGCTTTCCGCTGATATCTCCTTTCCTGACCATCACCTCTTCAACATATTCCGGGGGCGTTGTGTTGCCGCTGTGCTCCCCCGCTGAGGGTTGATCCCGCGAGCCCGGTACCGcc                                                            <  2:1794932/139‑1 (MQ=255)
                                                                                              ttCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTGACGGTTGATACCGCGAGCCCGGTACCGCCATATCCAGCGCCTCGTg                                           >  2:1034524/1‑140 (MQ=255)
                                                                                                 acccTCAGCTTTCCGCTGATATCCTCTTTCCTGACCACCCCCACTTCATCGTATGCGGGGGGCGTTGTGTTCCCGCTGTACTGCCGCGCTGACGGCTGATCCCGCGAGCCGGGTACCGCCATATCCAGCGCCTCGTGCgg                                        <  2:1662209/137‑1 (MQ=255)
                                                                                                  cGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTGACGGCTGATACCGCGAGCCCGGTACCGCCATATCCAGCGCCTCGTGCggg                                       >  1:2031634/1‑140 (MQ=255)
                                                                                                      cAGTTTTCCGCTGATATCCACTTCCCTGCCCACCCCCACTTCATCGTATTCGGGGGGCGTTGTGTTGCCCCTGTACTGCCGCGCTGACGGCTGATCCCGCGAGCCCGGTACCGCCATATCCAGCGCCTCGTGCGGGCGtt                                   <  2:1778311/140‑1 (MQ=255)
                                                                                                       aGCTTTCCGCTGATATCCACTTTCCTGACCATCACCACATCATCGTATTCCCGGGGCGTTGTGTTGCCGCTGTACTGCCGAGCTGACGGCTGATACCGCGAGCCCGGTACCGCCATATCCAGCGCCTAGTGCGGGCGTTc                                  >  2:1869955/1‑140 (MQ=255)
                                                                                                        gCTTTCCGCTAATTTCGCCTTCCCTGACCATCACCACTTCATCTTATCCGGGGGGCGTTGTGTTGCCGCTGTACTCCCGCGCTGACGGCTGATCCCGCGGGCCGGGTACCGCCATATCCAGCGCCTCGTGCGGGCGTTCa                                 <  2:1705041/140‑1 (MQ=255)
                                                                                                                   atatCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTGACGGCTGATACCGCGAGCCCGGTACCGCCATATCCAGCGCCTCGTGCGGGCGTTCAAGGTTATAGAc                      >  2:329236/1‑140 (MQ=255)
                                                                                                                      tCCACTTTCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTGACGGCTGATACCGCGAGCCCGGTACCGCCATATCCAGCGCCTCGTGCGGGCGTTCAAGGTTATAGACCGt                   >  1:991684/1‑140 (MQ=255)
                                                                                                                            ttCCTCCCCACCCCCCCTTCATCGTATCCGGGGGGCGTTGTGTTCCCGCTGTACTGCCGCGCGGGCGGCTGATCCCGCGAGCCGGGTACCGCCATATCCAGCGCCTCGTGCGGGCGTTCAAGGTTATAGACCGTCCGCCa             <  2:1381952/140‑1 (MQ=255)
                                                                                                                             tCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTGACGGCTGATACCGCGAGCCCGGTACCGCCATATCCAGCGCCTCGTGCGGGCGTTCAAGGTTATAGACCGTCCGCCat            >  2:588978/1‑139 (MQ=255)
                                                                                                                             tCCTGACCATCACCACTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTGACGGCTGATACCGCGAGCCCGGTACCGCCATATCCAGCGCCTCGTGCGGGCGTTCAAGGTTATAGACCGTCCGCCAg            >  2:1424090/1‑140 (MQ=255)
                                                                                                                                       caccacTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTGACGGCTGATACCGCGAGCCCGGTACCGCCATATCCAGCGCCTCGTGCGGGCGTTCAAGGTTATAGACCGTCCGCCAGTGGTCGAAgg  >  1:1490435/1‑140 (MQ=255)
                                                                                                                                       caccacTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTGACGGCTGATACCGCGAGCCCGGTACCGCCATATCCAGCGCCTCGTGCGGGCGTTCAAGGTTATAGACCGTCCGCCAGTGGCCGAAgg  >  1:899776/1‑140 (MQ=255)
                                                                                                                                       caccacTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTGACGGCTGATACCGCGAGCCCGGTACCGCCATATCCAGCGCCTCGTGCGGGCGTTCAAGGTTAAAGACCGTCCGCCAGTGGTCGAAgg  >  2:1080815/1‑140 (MQ=255)
                                                                                                                                           |                                                                                                                                       
ACCACCACACCTCGTAGCTGCCGTCTTCCTGCATCTCCTTCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCT‑‑GCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCCCTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTGACGGCTGATACCGCGAGCCCGGTACCGCCATATCCAGCGCCTCGTGCGGGCGTTCAAGGTTATAGACCGTCCGCCAGTGGTCGAAGG  >  NC_000913/280894‑281166

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A