Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F48 I1 R1	79	90.7	3162666	99.0%	3131039	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	386,288	G→T	E28* (GAG→TAG)	tauB →	taurine ABC transporter ATP binding subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	386,288	0	G	T	100.0%	265.6 / NA	77	E28* (GAG→TAG)	tauB	taurine ABC transporter ATP binding subunit
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (38/39); total (38/39)

TTACAGCCAGTACGTTACCTCGCGCTTCGTGCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCGAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTGGCGGGTAAGCGTATTGAGGGACCGGGAGCAGAGCGTG  >  NC_000913/386158‑386423

ttACAGCCAGTACGTTACCTCGCGCTTCGTGCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCGAACCGGCACTGGAAGATATTAACCTTTCGCTGGAAAGCGGCTAGCTACtgg                                                                                                                                >  2:940423/1‑140 (MQ=255)

ttACAGCCAGTACGTTACCTCGCGCTTCGTGCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACtgg                                                                                                                                <  2:218770/140‑1 (MQ=255)

 tACAGCCAGTACGTTACCTCGCGCTTCGTGCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACtggt                                                                                                                               <  1:793618/140‑1 (MQ=255)

 tACAGCCAGTACGTTACCTCGCGCTTCGTGCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACtggt                                                                                                                               <  2:452884/140‑1 (MQ=255)

      ccAGTACGTTACCTCGCGCTTCGTGCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGc                                                                                                                          >  2:907655/1‑140 (MQ=255)

      ccAGTACGTTACCTCGCGCTTCGTGCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGc                                                                                                                          >  2:1386709/1‑140 (MQ=255)

      ccAGTACGTTACCTCGCGCTTCGTGCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGc                                                                                                                          >  1:1571336/1‑140 (MQ=255)

        aGTACGTTACCTCGCGCTTCGTGCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTg                                                                                                                        >  1:186908/1‑140 (MQ=255)

         gTACGTTACCTCGCGCTTCGTGCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTgg                                                                                                                       >  2:711612/1‑140 (MQ=255)

          tACGTTACCTCGCGCTTCGTGCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGTCACCGGAAGATATTAACCTCCCTCTGGGAAGCGGCTTGCTACAGGCGGCGCtagt                                                                                                                      >  2:330207/1‑137 (MQ=255)

          tACGTTACCTCGCGCTTCGTGCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTggg                                                                                                                      >  1:270698/1‑140 (MQ=255)

          tACGTTACCTCGCGCTTCGTGCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACGGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTtgg                                                                                                                      >  2:1065371/1‑140 (MQ=255)

              ttACCTCGCGCTTCGTGCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCg                                                                                                                  >  1:976109/1‑140 (MQ=255)

                 ccTCGCGCTTCGTGCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTcc                                                                                                               >  1:151437/1‑140 (MQ=255)

                 ccTCGCGCTTCGTGAAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCTATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTCGGGGTGCTGGGGCCGTcc                                                                                                               >  1:374682/1‑140 (MQ=255)

                  cTCGCGCTTCGTGCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCg                                                                                                              >  2:81228/1‑140 (MQ=255)

                    cgcgCTTCGTGCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAGCCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGc                                                                                                            <  2:1043517/140‑1 (MQ=255)

                    cgcgCTTCGTGCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCggt                                                                                                            >  2:1457690/1‑139 (MQ=255)

                    cgcgCTTCGTGCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGc                                                                                                            <  1:907655/140‑1 (MQ=255)

                    cgcgCTTCGTGCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGc                                                                                                            >  1:858758/1‑140 (MQ=255)

                    cgcgCTTCGTGCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGc                                                                                                            >  1:600991/1‑140 (MQ=255)

                    cgcgCTTCGTGCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGc                                                                                                            <  2:156136/140‑1 (MQ=255)

                         ttCGTGCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCgg                                                                                                       <  1:790771/140‑1 (MQ=255)

                              gCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTaaaa                                                                                                  <  2:451429/140‑1 (MQ=255)

                                  tAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAaccac                                                                                              <  1:455810/140‑1 (MQ=255)

                                          ggCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGa                                                                                      >  2:724629/1‑140 (MQ=255)

                                            cgcAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCCAACCGGCCCTGGAACATATCAACCTGACTCTGGAAAGCGGCTAGCTACTGGAGGTGCCGTGGCCGTCCTGCTGCGGTAAAAGAACCCTGCTGAAt                                                                                    >  2:394987/1‑140 (MQ=255)

                                            cgcAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAAt                                                                                    >  1:727721/1‑140 (MQ=255)

                                            cgcAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAAt                                                                                    >  1:86122/1‑140 (MQ=255)

                                            cgcAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAAt                                                                                    >  1:271/1‑140 (MQ=255)

                                              cAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCt                                                                                  >  2:1111833/1‑140 (MQ=255)

                                                     tgcAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGcc                                                                           >  2:780529/1‑140 (MQ=255)

                                                     tgcAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGcc                                                                           <  2:600991/140‑1 (MQ=255)

                                                          aTCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGttt                                                                      <  2:727721/140‑1 (MQ=255)

                                                          aTCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGttt                                                                      <  2:858758/140‑1 (MQ=255)

                                                          aTCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGttt                                                                      <  1:940423/140‑1 (MQ=255)

                                                            ctctcATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTtg                                                                    >  1:1020089/1‑140 (MQ=255)

                                                            ctctcATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTtg                                                                    >  1:862745/1‑140 (MQ=255)

                                                             tctcATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTtgt                                                                   <  2:862745/140‑1 (MQ=255)

                                                             tctcATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGACGGTTTtgt                                                                   <  2:1020089/140‑1 (MQ=255)

                                                             tctcATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTCCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTtgt                                                                   <  1:1038276/140‑1 (MQ=255)

                                                              ctcATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTtgtg                                                                  <  1:81228/140‑1 (MQ=255)

                                                               tcATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGttt                                                                      >  1:971293/1‑135 (MQ=255)

                                                               tcATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGttt                                                                      <  2:971293/135‑1 (MQ=255)

                                                               tcATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGc                                                                 <  2:976109/140‑1 (MQ=255)

                                                                      tACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTtgt                                                                   <  1:820436/131‑1 (MQ=255)

                                                                      tACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTtgt                                                                   >  2:820436/1‑131 (MQ=255)

                                                                      tACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCa                                                          >  1:588270/1‑140 (MQ=255)

                                                                       aCGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAg                                                         <  1:1386709/140‑1 (MQ=255)

                                                                       aCGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAg                                                         >  2:34957/1‑140 (MQ=255)

                                                                         gCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCa                                                       >  2:607009/1‑140 (MQ=255)

                                                                            gATTATGGCGGCAAACCGGCACTGGAAGATATCAGCCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAGACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATgg                                                    <  2:429682/140‑1 (MQ=255)

                                                                             aTTATGGCGGCAAACCGGCCCTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACCGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGgc                                                   >  2:849610/1‑140 (MQ=255)

                                                                             aTTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTAt                                                            >  2:968843/1‑131 (MQ=255)

                                                                             aTTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTAt                                                            <  1:968843/131‑1 (MQ=255)

                                                                             aTTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGgc                                                   >  1:1010369/1‑140 (MQ=255)

                                                                             aTTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGgc                                                   >  2:577674/1‑140 (MQ=255)

                                                                               tATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGgcag                                                 <  1:34957/140‑1 (MQ=255)

                                                                                        aaaCCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGTCTTATCAGCATGGCAGCATTCAACt                                        >  1:409706/1‑140 (MQ=255)

                                                                                         aaCCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTg                                       <  1:607009/140‑1 (MQ=255)

                                                                                         aaCCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGCCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTg                                       <  1:1450454/140‑1 (MQ=255)

                                                                                              gCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTGGCggg                                  <  1:577674/140‑1 (MQ=255)

                                                                                              gCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTGGCggg                                  <  1:711612/140‑1 (MQ=255)

                                                                                               cACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGTCTTATCAGCATGGCAGCATTCAACTGGCGGGt                                 <  2:409706/140‑1 (MQ=255)

                                                                                               cACTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTGGCGGGt                                 <  2:1010369/140‑1 (MQ=255)

                                                                                                aCTGGAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTGGCGGGTa                                <  2:270698/140‑1 (MQ=255)

                                                                                                    gAAGATATCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTGGCGGGTAAGCg                            >  2:933233/1‑140 (MQ=255)

                                                                                                           tCAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCGCCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTGGCGGGTAAGCGTATTGAg                     <  2:1571336/140‑1 (MQ=255)

                                                                                                           acAACCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTGGCGGGTAAGCGTATTGAg                     <  2:86122/139‑1 (MQ=255)

                                                                                                              aCCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTGGCGGGTCAGCGGAtttgagga                  >  2:231771/1‑134 (MQ=255)

                                                                                                              aCCTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTGGCGGGTAAGCGTATTGAGGGa                  >  2:1543435/1‑140 (MQ=255)

                                                                                                               ccTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTGGCGGGTAAGCGTATTGAGGGAc                 >  2:1166924/1‑140 (MQ=255)

                                                                                                               ccTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTGGCGGGTAAGCGTATTGAGGGAc                 >  1:896664/1‑140 (MQ=255)

                                                                                                               ccTGACGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTGGCGGGTAAGCGTATTGAGGGAc                 <  1:1425417/140‑1 (MQ=255)

                                                                                                               acTGACGCTGGAAAGCAGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTGGCGGGTAAGCGTATTGAGGGAc                 <  2:1254181/139‑1 (MQ=255)

                                                                                                                   aCGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTGGCGGGTAAGCGTATTTTGGGGCCggg             >  2:790948/1‑140 (MQ=255)

                                                                                                                   aCGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTGGCGGGTAAGCGTATTGAGGGACCggg             >  2:699979/1‑140 (MQ=255)

                                                                                                                   aCGCTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTGGCGGGTAAGCGTATTGAGGGACCggg             >  1:389719/1‑140 (MQ=255)

                                                                                                                     acTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGGCTTATCAGCATGGCAGCATTCAACTGGCGGGTAAGCGTATTGAGGGACCGGGAg           <  2:467375/139‑1 (MQ=255)

                                                                                                                      cTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTGGCGGGTAAGCGTATTGAGGGACCGGGAGc          <  1:1065371/140‑1 (MQ=255)

                                                                                                                      cTGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTGGCGGGTAAGCGTATTGAGGGACCGGGAGc          <  1:330207/140‑1 (MQ=255)

                                                                                                                       tGGAAAGCGGCTAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTGGCGGGTAAGCGTATTGAGGGACCGGGAGCa         <  1:394987/140‑1 (MQ=255)

                                                                                                                              cggctAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTGGCGGGTAAGCGTATTGAGGGACCGGGAGCAGAGCGTg  >  2:1150597/1‑140 (MQ=255)

                                                                                                                              cggctAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTGGCGGGTAAGCGTATTGAGGGACCGGGAGCAGAGCGTg  >  1:970199/1‑140 (MQ=255)

TTACAGCCAGTACGTTACCTCGCGCTTCGTGCAATAAAAGGAGGCGCAGATGCTGCAAATCTCTCATCTTTACGCCGATTATGGCGGCAAACCGGCACTGGAAGATATCAACCTGACGCTGGAAAGCGGCGAGCTACTGGTGGTGCTGGGGCCGTCCGGCTGCGGTAAAACCACCCTGCTGAATCTGATTGCCGGTTTTGTGCCTTATCAGCATGGCAGCATTCAACTGGCGGGTAAGCGTATTGAGGGACCGGGAGCAGAGCGTG  >  NC_000913/386158‑386423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A