Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F48 I1 R1 79 90.7 3162666 99.0% 3131039 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 621,679 G→T L171M (CTG→ATG)  fepD ← ferric enterobactin ABC transporter membrane subunit FebD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913621,6790GT98.4% 218.5 / NA 64L171M (CTG→ATG) fepDferric enterobactin ABC transporter membrane subunit FebD
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base T (40/23);  total (40/24)
Fisher's exact test for biased strand distribution p-value = 3.75e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GCGACTCAGTAATAGCGCAGTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCAGGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCCCGCCGCCCTGACTGCCGGTAAAGGCAACAATCAATGAGGCCACCAGCGCCCCGGCG  >  NC_000913/621545‑621815
                                                                                                                                      |                                                                                                                                        
gcgACTCAGTAATAGCGCAGTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGa                                                                                                                                     <  1:131511/140‑1 (MQ=255)
gcgACTCAGTAATAGCGCAGTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGa                                                                                                                                     <  1:321455/140‑1 (MQ=255)
            tAGCGCAGTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCa                                                                                                                         <  1:930960/140‑1 (MQ=255)
            tAGCGCAGTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCa                                                                                                                         <  1:454924/140‑1 (MQ=255)
              gcgcAGTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGt                                                                                                                       <  2:871105/140‑1 (MQ=255)
              gcgcAGTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGt                                                                                                                       >  1:977177/1‑140 (MQ=255)
              gcgcAGTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGt                                                                                                                       >  1:972181/1‑140 (MQ=255)
              gcgcAGTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGt                                                                                                                       >  1:513810/1‑140 (MQ=255)
              gcgcACTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGt                                                                                                                       <  2:972181/140‑1 (MQ=255)
                 cAGTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCTAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGt                                                                                                                       <  2:807035/137‑1 (MQ=255)
                 cAGTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCTAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGt                                                                                                                       >  1:807035/1‑137 (MQ=255)
                 cAGTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCt                                                                                                                    >  2:475435/1‑140 (MQ=255)
                 cAGTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCt                                                                                                                    >  2:397554/1‑140 (MQ=255)
                 cAGTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCt                                                                                                                    >  1:913023/1‑140 (MQ=255)
                  aGTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGCATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGTCGATGCCGCTGGTCAGTCCtt                                                                                                                   >  1:158881/1‑140 (MQ=255)
                   gTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGGTTGCGAATATCCGGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTc                                                                                                                  >  1:1488230/1‑140 (MQ=255)
                   gTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGTGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTc                                                                                                                  >  1:1154427/1‑140 (MQ=255)
                   gTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTgg                                                                                                                            <  1:1569557/130‑1 (MQ=255)
                   gTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTgg                                                                                                                            >  2:1569557/1‑130 (MQ=255)
                   gTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGt                                                                                                                       >  1:243720/1‑135 (MQ=255)
                   gTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGt                                                                                                                       <  2:243720/135‑1 (MQ=255)
                   gTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTc                                                                                                                  >  1:1089155/1‑140 (MQ=255)
                   gTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTc                                                                                                                  <  2:580763/140‑1 (MQ=255)
                    ttGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTcc                                                                                                                 >  1:472240/1‑140 (MQ=255)
                    ttGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTcc                                                                                                                 >  1:57289/1‑140 (MQ=255)
                    ttGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTcc                                                                                                                 >  2:441379/1‑140 (MQ=255)
                       cTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGc                                                                                                              >  2:379191/1‑140 (MQ=255)
                         ccGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCAc                                                                                                            >  1:312680/1‑140 (MQ=255)
                                    cACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAgcg                                                                                                 <  2:513810/140‑1 (MQ=255)
                                         ggATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCAcg                                                                                            >  1:742176/1‑140 (MQ=255)
                                         ggATCAGCACCACTTTTAAGGTATATAGGTTGCGAATAGCCAGCGAACCGGATTACCAGCACCCCACCTCACCCTAGGCCTCTGGCGTAACCATGACGTTGCGCCTGGTCAGTCCTTCGACCTCCGTGGCCATCGCCAca                                                                                            <  2:1488230/140‑2 (MQ=255)
                                              aGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCCCCGCCGCCAGCGCCAcgcccgc                                                                                       <  2:158881/140‑1 (MQ=255)
                                              aGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCAcgcccgc                                                                                       >  1:1273357/1‑140 (MQ=255)
                                                     cTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGtt                                                                                >  1:1111821/1‑140 (MQ=255)
                                                     cTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGtt                                                                                >  2:1566573/1‑140 (MQ=255)
                                                        ttAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTaaa                                                                             <  2:472240/140‑1 (MQ=255)
                                                            ggTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTATACGCa                                                                         <  1:379191/140‑1 (MQ=255)
                                                                tgaaGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGACAGTCCTTCCAGCACCACCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCgg                                                                     >  2:1477479/4‑140 (MQ=255)
                                                                tGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCgg                                                                     >  1:181576/1‑140 (MQ=255)
                                                                tGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCgg                                                                     >  2:1519648/1‑140 (MQ=255)
                                                                tGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGAACGCAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCgg                                                                     >  1:159870/1‑140 (MQ=255)
                                                                   aGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACt                                                                  <  2:1111821/140‑1 (MQ=255)
                                                                       tGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAAc                                                              >  1:386423/1‑140 (MQ=255)
                                                                       tGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAAc                                                              >  2:1375309/1‑140 (MQ=255)
                                                                          gAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGc                                                           <  1:1288643/140‑1 (MQ=255)
                                                                             tatCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCccg                                                        <  2:181576/140‑1 (MQ=255)
                                                                                   gCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGACAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCCCGCCGccc                                                  >  2:736700/1‑140 (MQ=255)
                                                                                      aaCCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCCCGCCGCCCTGa                                               >  2:1073376/1‑140 (MQ=255)
                                                                                      aaCCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGAGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCCCGCCGCCCTGa                                               <  2:742176/140‑1 (MQ=255)
                                                                                       aCCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATTCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCCCGCCGCCCTGAc                                              >  2:1517464/1‑140 (MQ=255)
                                                                                       aCCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCCCGCCGCCCTGAc                                              >  1:1293560/1‑140 (MQ=255)
                                                                                         cGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCCCGCCGCCCTGACTg                                            <  1:1519648/140‑1 (MQ=255)
                                                                                           gCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCCCGCCGCCCTGACTGcc                                          >  1:518905/1‑140 (MQ=255)
                                                                                              tGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCCCGCCGCCCTGACTGCCGGt                                       >  1:620033/1‑140 (MQ=255)
                                                                                                    aaaCGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCCCGCCGCCCTGACTGCCGGTAAAGGc                                 <  1:397554/140‑1 (MQ=255)
                                                                                                    aaaCGCAACTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCCCGCCGCCCTGACTGCCGGTAAAGGc                                 <  2:1089155/140‑1 (MQ=255)
                                                                                                    aaaCGCAACTGATCGTAGACGTCAGGATTAAGCAGGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCCCGCCGCCCTGACTGCCGGTAAAGGc                                 <  2:1273357/140‑1 (MQ=255)
                                                                                                          aaCTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCCCGCCGCCCTGACTGCCGGTAAAGGCAAcaat                           >  1:847001/1‑140 (MQ=255)
                                                                                                            cTGATCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCCCGCCGCCCTGACTGCCGGTAAAGGCAAcaatca                         <  1:618912/140‑1 (MQ=255)
                                                                                                              aaTCGAAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGCCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCCCGCCGCCCTGACTGCCGGTAAAGGCAAcaatcaat                       <  2:1293560/139‑1 (MQ=255)
                                                                                                               aTCGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCCCGCCGCCCTGACTGCCGGTAAAGGCAACAATCAATg                      >  1:1401120/1‑140 (MQ=255)
                                                                                                                 cGTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCCCGCCGCCCTGACTGCCGGTAAAGGCAACAATCAATGAg                    >  1:36852/1‑140 (MQ=255)
                                                                                                                  gTAGACGTCAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCCCGCCGCCCTGACTGCCGGTAAAGGCAACAATCAATGAgg                   >  2:119971/1‑140 (MQ=255)
                                                                                                                          cAGGATTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCCCGCCGCCCTGACTGCCGGTAAAGGCAACAATCAATGAGGCCACCAgc           >  2:1087800/1‑140 (MQ=255)
                                                                                                                             gATTAAGCATTGGCATGCCGCTGTCCAGCCCTTCAGACACCCACGCCAGCGCCACGCCCGCAAGGGTTAAACGCACCGGACTTAACTGCCCGCCGCCCTGACTGCCGGTAAAGGCAACAATCAATGAGGCCACCAGCGcc        <  2:57289/140‑1 (MQ=255)
                                                                                                                              aTTAAGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCCCGCCGCCCTGACTGCCGGTAAAGGCAACAATCAATGAGGCCACCAGCGccc       <  2:36852/140‑1 (MQ=255)
                                                                                                                                  aGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCCCGCCGCCCTGACTGCCGGTAAAGGCAACAATCAATGAGGCCACCAGCGCCCCGGc   >  1:632483/1‑140 (MQ=255)
                                                                                                                                  aGCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCCCGCCGCCCTGACTGCCGGTAAAGGCAACAATCAATGAGGCCACCAGCGCCCCGGc   >  1:370383/1‑140 (MQ=255)
                                                                                                                                   gCATGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCCCGCCGCCCTGACTGCCGGTAAAGGCAACAATCAATGAGGCCACCAGCGCCCCGGCg  <  2:913023/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                        
GCGACTCAGTAATAGCGCAGTTGCTCCGGCGATCAGCACCGGGATCAGCACCACTTTTAAGGTATGTAGATTGCGAATATCCAGCGAACCGGCTTGCCAGAAACGCAACTGATCGTAGACGTCAGGATTAAGCAGGGCGATGCCGCTGGTCAGTCCTTCCAGCACCGCCGCCAGCGCCACGCCCGCCAGGGTTAAACGCACCGGACTTAACTGCCCGCCGCCCTGACTGCCGGTAAAGGCAACAATCAATGAGGCCACCAGCGCCCCGGCG  >  NC_000913/621545‑621815

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A