Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F48 I1 R1 45 83.3 2696702 99.2% 2675128 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 622,331 G→T S11I (AGC→ATC)  entS → enterobactin exporter EntS

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913622,3310GT98.6% 251.5 / ‑2.9 70S11I (AGC→ATC) entSenterobactin exporter EntS
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base T (44/25);  total (45/25)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.47e-01

ATGAAATTAATTATCGTTATCGATCTTATTTGGATATGTTAGCATGTGCAGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCAGCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGCGGTGCCGGTGCAGATCCAGATGATGACACATTCCACCTGGCAGGTGGGGCTT  >  NC_000913/622206‑622467
                                                                                                                             |                                                                                                                                        
aTGAAATTAATTATCGTTATCGATCTTATTTGGATATGTTAGCATGTGCAGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGc                                                                                                                            >  2:955106/1‑140 (MQ=255)
     attaattaTCGTTATCGATCTTATTTGGATATGTTAGCATGTGCAGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCg                                                                                                                       <  1:921557/140‑1 (MQ=255)
                  atcgATCTTATTTGGATATGTTAGCATGTGCAGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAg                                                                                                          >  1:469929/1‑140 (MQ=255)
                   tcgATCTTATTTGGATATGTTAGCATGTGCAGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGt                                                                                                         >  1:1286671/1‑140 (MQ=255)
                           aTTTGGATATGTTAGCATGTGCAGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCctcg                                                                                                 >  1:188542/1‑140 (MQ=255)
                                 atatGTTAGCATGTGCAGCCTAAGAATAGGTATTTAAAATATTTGTTGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCAGGCGTTTCGCGCGGTATTCCTCGCTCGtt                                                                                           >  2:30359/1‑140 (MQ=255)
                                 atatGTTAGCATGTGCAGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCctcgct                                                                                               <  2:145993/136‑1 (MQ=255)
                                 atatGTTAGCATGTGCAGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCctcgct                                                                                               >  1:145993/1‑136 (MQ=255)
                                 atatGTTAGCATGTGCAGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGtt                                                                                           >  1:981292/1‑140 (MQ=255)
                                  tatGTTAGCATGTGCAGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGttt                                                                                          <  2:1286671/140‑1 (MQ=255)
                                          cATGTGCAGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCaa                                                                                  >  2:262356/1‑140 (MQ=255)
                                           aTGTGCAGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAAt                                                                                 >  2:136958/1‑140 (MQ=255)
                                             gtgCAGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATtg                                                                               <  1:136958/140‑1 (MQ=255)
                                              tgCAGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATtgt                                                                              >  1:162391/1‑140 (MQ=255)
                                              tgCAGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATtgt                                                                              >  2:1207468/1‑140 (MQ=255)
                                              tgCAGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATtgt                                                                              >  1:851050/1‑140 (MQ=255)
                                              tgCAGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATtgt                                                                              >  1:330277/1‑140 (MQ=255)
                                              tgCAGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATtgt                                                                              >  2:960293/1‑140 (MQ=255)
                                              tgCAGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATtgt                                                                              >  2:292856/1‑140 (MQ=255)
                                               gCAGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATtgtg                                                                             >  1:267901/1‑140 (MQ=255)
                                                cAGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTgtgt                                                                            >  1:448385/1‑140 (MQ=255)
                                                cAGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTgtgt                                                                            >  2:489169/1‑140 (MQ=255)
                                                 aGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGtc                                                                           <  1:292856/140‑1 (MQ=255)
                                                   ccTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGtctc                                                                         >  2:1316444/1‑140 (MQ=255)
                                                   ccTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGtctc                                                                         >  1:1058963/1‑140 (MQ=255)
                                                   ccTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATAGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGtctc                                                                         >  1:881103/1‑140 (MQ=255)
                                                   ccTAAGAATACGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGtctc                                                                         <  1:1307225/140‑1 (MQ=255)
                                                        gAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGt                                                                    >  1:434050/1‑140 (MQ=255)
                                                        gAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGt                                                                    <  2:981292/140‑1 (MQ=255)
                                                             ggTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCt                                                               >  2:202273/1‑140 (MQ=255)
                                                             ggTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCt                                                               >  1:882847/1‑140 (MQ=255)
                                                             ggTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCt                                                               >  2:244816/1‑140 (MQ=255)
                                                                 tttAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGc                                                           >  1:333290/1‑140 (MQ=255)
                                                                   tAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGt                                                         >  2:620133/1‑140 (MQ=255)
                                                                   tAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGt                                                         >  2:333140/1‑140 (MQ=255)
                                                                   tAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGt                                                         >  1:1328101/1‑140 (MQ=255)
                                                                   tAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGt                                                         >  1:1335808/1‑140 (MQ=255)
                                                                      aaTATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTcgc                                                      <  1:920946/140‑1 (MQ=255)
                                                                           ttGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTTCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGcggtgc                                                 <  2:885571/140‑1 (MQ=255)
                                                                           ttGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGcggtgc                                                 <  2:330277/140‑1 (MQ=255)
                                                                           ttGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGcggtgc                                                 <  2:162391/140‑1 (MQ=255)
                                                                               tGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGcggtgccggt                                             <  1:262356/140‑1 (MQ=255)
                                                                                ggCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGcggtgccggtg                                            <  2:448385/140‑1 (MQ=255)
                                                                                ggCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGcggtgccggtg                                            <  1:202273/140‑1 (MQ=255)
                                                                                ggCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGcggtgccggtg                                            <  1:573908/140‑1 (MQ=255)
                                                                                ggCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCAcggtgccggtg                                            >  2:422693/1‑140 (MQ=255)
                                                                                  cAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGCGGTGCCGGTGCa                                          <  1:869629/140‑1 (MQ=255)
                                                                                         ttGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGCGGTGCCGGTGCAGATCCAg                                   >  1:421063/1‑140 (MQ=255)
                                                                                          tGTAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGCGGTGCCGGTGCAGATCCAga                                  <  1:244816/140‑1 (MQ=255)
                                                                                            tAATGAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGCGGTGCCGGTGCAGATCCAgatg                                <  2:267901/140‑1 (MQ=255)
                                                                                                gAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGCGGTGCCGGTGCAGATCCAGAtgatga                            <  2:851050/140‑1 (MQ=255)
                                                                                                gAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGCGGTGCCGGTGCAGATCCAGAtgatga                            <  1:955106/140‑1 (MQ=255)
                                                                                                gAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGCGGTGCCGGTGCAGATCCAGAtgatga                            >  1:1130699/1‑140 (MQ=255)
                                                                                                gAATAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGCGGTGCCGGTGCAGATCCAGAtgatga                            >  1:785233/1‑140 (MQ=255)
                                                                                                 aaTAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGCGGTGCCGGTGCAGATCCAGATGATGac                           >  2:349176/1‑140 (MQ=255)
                                                                                                 aaTAAACAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGCGGTGCCGGTGCAGATCCAGATGATGac                           >  2:325980/1‑140 (MQ=255)
                                                                                                    aaaCAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGCGGTGCCGGTGCAGATCCAGATGATGAcaca                        <  2:421063/140‑1 (MQ=255)
                                                                                                      aCAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGCGGTGCCGGTGCAGATCCAGATGATGACACAtt                      >  1:703563/1‑140 (MQ=255)
                                                                                                      aCAATCCTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGCGGTGCCGGTGCAGATCCAGATGATGACACAtt                      >  2:556905/1‑140 (MQ=255)
                                                                                                           ccTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGCGGTGCCGGTGCAGATCCAGATGATGACACATTCCAcc                 >  1:43596/1‑140 (MQ=255)
                                                                                                            cTGGCTGCTTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGCGGTGCCGGTGCAGATCCAGATGATGACACATTCCACCt                <  1:556905/140‑1 (MQ=255)
                                                                                                                ctgctTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGCGGTGCCGGTGCAGATCCAGATGATGACACATTCCACCTGGCa            >  1:903515/1‑140 (MQ=255)
                                                                                                                  gctTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGGCGCGGTGCCGGTGCAGATCCAGATGATGACACATTCCACCTGGCAgg          >  2:526507/1‑140 (MQ=255)
                                                                                                                   ctTAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGCGGTGCCGGTGCAGATCCAGATGATGACACATTCCACCTGGCAGGt         <  2:434050/140‑1 (MQ=255)
                                                                                                                    ttAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGCGGTGCCGGTGCAGATCCAGATGATGACACATTCCACCTGGCAGGTg        >  1:983858/1‑140 (MQ=255)
                                                                                                                    ttAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGCGGTGCCGGTGCAGATCCAGATGATGACACATTCCACCTGGCAGGTg        >  2:1273792/1‑140 (MQ=255)
                                                                                                                     tAACCTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGCGGTGCCGGTGCAGATCCAGATGATGACACATTCCACCTGGCAGGTgg       <  2:469929/140‑1 (MQ=255)
                                                                                                                         cTCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCACGGTGCCGGTGCAGATCCAGATGATGACACATTCCACCTGGCAGGTGGGGCt   <  1:422693/140‑1 (MQ=255)
                                                                                                                         cTCAGCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGCGGTGCCGGTGCAGATCCAGATGATGACACATTCCACCTGGCAGGTGGGGCt   >  1:55207/1‑140 (MQ=255)
                                                                                                                          tCATCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGCGGTGCCGGTGCAGATCCAGATGATGACACATTCCACCTGGCAGGTGGGGCtt  >  2:657350/1‑140 (MQ=255)
                                                                                                                             |                                                                                                                                        
ATGAAATTAATTATCGTTATCGATCTTATTTGGATATGTTAGCATGTGCAGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAATGAATAAACAATCCTGGCTGCTTAACCTCAGCCTGTTGAAAACGCACCCGGCGTTTCGCGCAGTATTCCTCGCTCGTTTCATCTCAATTGTGTCTCTGGGTTTGCTCGGCGTCGCGGTGCCGGTGCAGATCCAGATGATGACACATTCCACCTGGCAGGTGGGGCTT  >  NC_000913/622206‑622467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A