Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F48 I1 R1	79	90.7	3162666	99.0%	3131039	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	934,611	C→A	P463Q (CCG→CAG)	ftsK →	cell division DNA translocase FtsK

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	934,611	0	C	A	100.0%	271.5 / NA	76	P463Q (CCG→CAG)	ftsK	cell division DNA translocase FtsK
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (41/35); total (41/35)

AGCCGTATTATGCCCCTGCGCCAGAACAACCGGTGGCAGGTAACGCCTGGCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCCGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTGAAGAAGTTGAAGAGAAGCGAGCCCGTGAACGTGA  >  NC_000913/934476‑934746

aGCCGTATTATGCCCCTGCGCCAGAACAATCGGTGGCAGGTAACGCCTGGCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTg                                                                                                                                     >  1:1248545/1‑140 (MQ=255)

  ccGTATTATGCCCCTGCGCCAGAACAACCGGTGGCAGGTAACGCCTGGCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTa                                                                                                                                   <  1:32511/140‑1 (MQ=255)

    gTATTATGACCCTGCGCCAGAACAACCGGTGGCAGGTAACGCCTGGCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTAcc                                                                                                                                 <  1:1228443/140‑1 (MQ=255)

            ccccTGCGCCAGAACAACCGGTGGCAGGTAACGCCTGGCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCg                                                                                                                         >  1:426746/1‑140 (MQ=255)

              ccTGCGCCAGAACAACCGGTGGCAGGTAACGCCTGGCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCa                                                                                                                       <  2:1257273/140‑1 (MQ=255)

              ccTGCGCCAGAACAACCGGTGGCAGGTAACGCCTGGCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCa                                                                                                                       <  1:350892/140‑1 (MQ=255)

              ccTGCGCCAGAACAACCGGTGGCAGGTAACGCCTGGCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCa                                                                                                                       <  2:881276/140‑1 (MQ=255)

                tGCGCCAGAACAACCGGTGGCAGGTAACGCCTGGCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAAc                                                                                                                     >  2:226409/1‑140 (MQ=255)

                tGCGCCAGAACAACCGGTGGCAGGTAACGCCTGGCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAAc                                                                                                                     <  2:809234/140‑1 (MQ=255)

                tGCGCCAGAACAACCGGTGGCAGGTAACGCCTGGCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAAc                                                                                                                     >  1:1575063/1‑140 (MQ=255)

                 gcgcCAGAACAACCGGTGGCAGGTAACGCCTGGCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGCGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAAcc                                                                                                                    <  1:1074833/140‑1 (MQ=255)

                 gcgcCAGAACAACCGGTGGCAGGTAACGCCTGGCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAAcc                                                                                                                    >  2:413344/1‑140 (MQ=255)

                 gcgcCAGAACAACCGGTGGCAGGTAACGCCTGGCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAAcc                                                                                                                    >  1:472643/1‑140 (MQ=255)

                  cgcCAGAACAACCGGTGGCAGGTAACGCCTGGCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAAccc                                                                                                                   >  1:575626/1‑140 (MQ=255)

                   gcCAGAACAGCCGGTGGCAGGTAACGCCTGACAAGCCGAAGAGCAGCAATCCTCTTTTGCTCCACAGTCTACATGCCAGACAGAGCAAACTAACCAGCAGCCAACCGCCCAGGAGCAGTTGTACCAACAGCCGCAGCCCg                                                                                                                  <  2:1470962/140‑1 (MQ=255)

                    ccAGAACAACCGGTGGCAGGTAACGCCTGGCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGt                                                                                                                 <  2:713787/140‑1 (MQ=255)

                           aacCGGTGGCAGGTAACGCCTGGCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAAcag                                                                                                          <  1:828552/140‑1 (MQ=255)

                           aacCGGTGGCAGGTAACGCCTGGCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAAcag                                                                                                          <  1:226409/140‑1 (MQ=255)

                             ccGGTGGCAGGTAACGCCTGGCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAAcagca                                                                                                        >  2:858831/1‑140 (MQ=255)

                                 tGGCAGGTAACGCCTGGCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAAca                                                                                                           <  1:991760/133‑1 (MQ=255)

                                 tGGCAGGTAACGCCTGGCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAAca                                                                                                           >  2:991760/1‑133 (MQ=255)

                                       gTAACGCCTGGCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTtgtg                                                                                              >  1:1407199/1‑140 (MQ=255)

                                           cGCCTGGCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGc                                                                                          >  2:294930/1‑140 (MQ=255)

                                                ggCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGaa                                                                                     <  1:858831/140‑1 (MQ=255)

                                                 gCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAAc                                                                                    >  1:1090017/1‑140 (MQ=255)

                                                  cAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAAcc                                                                                   <  1:294930/140‑1 (MQ=255)

                                                  cAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAAcc                                                                                   <  1:192305/140‑1 (MQ=255)

                                                  cAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAAcc                                                                                   <  1:1522692/140‑1 (MQ=255)

                                                  aaaGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAAcc                                                                                   <  2:575626/139‑1 (MQ=255)

                                                  aaaGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAAcc                                                                                   <  2:576019/139‑1 (MQ=255)

                                                  aaaGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAAcc                                                                                   <  2:426746/139‑1 (MQ=255)

                                                            agcagcAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTagaa                                                                         <  2:658562/140‑1 (MQ=255)

                                                                      cACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAAc                                                               >  2:449605/1‑140 (MQ=255)

                                                                           ttGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCcgcg                                                          <  1:413344/140‑1 (MQ=255)

                                                                                  acaGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTccgc                                                   <  2:1090017/140‑1 (MQ=255)

                                                                                     gTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCcgccgc                                                >  2:1145256/1‑140 (MQ=255)

                                                                                      tCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCt                                               >  2:590410/1‑140 (MQ=255)

                                                                                      tCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCt                                               >  2:1992/1‑140 (MQ=255)

                                                                                      tCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCt                                               >  1:701658/1‑140 (MQ=255)

                                                                                      tCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCt                                               >  2:967266/1‑140 (MQ=255)

                                                                                        tACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCttt                                             >  1:895431/1‑140 (MQ=255)

                                                                                           aTACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTtact                                          >  1:293719/1‑140 (MQ=255)

                                                                                               cAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACtt                                      >  2:297054/1‑140 (MQ=255)

                                                                                               cAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACtt                                      >  1:1041522/1‑140 (MQ=255)

                                                                                                aGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACttt                                     >  2:1022071/1‑140 (MQ=255)

                                                                                                aGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACttt                                     >  1:1062640/1‑140 (MQ=255)

                                                                                                aGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACttt                                     >  1:1451062/1‑140 (MQ=255)

                                                                                                  aCTGAGCAAACTTATCAGTAGCCAGCCGTTCAGGAGCAGTTGTACCAACAGGCGCAACCCTTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGGAGAGACAAAACCCGCGCGTCCGCTGCTTTACTACTTTga                                   >  2:1353013/1‑140 (MQ=255)

                                                                                                  aCTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTga                                   >  1:919060/1‑140 (MQ=255)

                                                                                                  aCTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTga                                   >  2:801827/1‑140 (MQ=255)

                                                                                                  aCTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTga                                   >  2:1189532/1‑140 (MQ=255)

                                                                                                   cTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTgaa                                  <  2:1248545/140‑1 (MQ=255)

                                                                                                    tGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTgaag                                 >  2:806132/1‑140 (MQ=255)

                                                                                                    tGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTgaag                                 <  2:701658/140‑1 (MQ=255)

                                                                                                    tGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTgaag                                 >  1:566500/1‑140 (MQ=255)

                                                                                                    tGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTgaag                                 >  1:226729/1‑140 (MQ=255)

                                                                                                    tGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTgaag                                 <  1:1145256/140‑1 (MQ=255)

                                                                                                     gAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCACTTTACTACTTTgaaga                                >  1:300171/1‑140 (MQ=255)

                                                                                                      aGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCTGCGCGTCCGCCGCTTTACTACTTTgaagaa                               >  2:182251/1‑140 (MQ=255)

                                                                                                      aGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTgaagaa                               >  1:976814/1‑140 (MQ=255)

                                                                                                      aGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTgaagaa                               >  2:483539/1‑140 (MQ=255)

                                                                                                      aGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTgaagaa                               >  1:1007692/1‑140 (MQ=255)

                                                                                                      aGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTgaagaa                               >  1:1305945/1‑140 (MQ=255)

                                                                                                       gCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAAcc                                                                                   <  2:1292171/87‑1 (MQ=255)

                                                                                                       gCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAAcc                                                                                   >  1:1292171/1‑87 (MQ=255)

                                                                                                       gCAAACTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTGaagaag                              >  1:77505/1‑140 (MQ=255)

                                                                                                         aaaCTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTGAAGAAGtt                            <  2:472643/140‑1 (MQ=255)

                                                                                                           aCTTATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTGAAGAAGTTGa                          <  2:1305945/140‑1 (MQ=255)

                                                                                                             ttATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTGAAGAAGTTGAag                        <  2:226729/140‑1 (MQ=255)

                                                                                                             ttATCAGCAGCCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTGAAGAAGTTGAag                        <  1:801827/140‑1 (MQ=255)

                                                                                                                  agcagcCAGCCGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTGAAGAAGTTGAAGAGAAg                   <  1:590410/140‑1 (MQ=255)

                                                                                                                     agccagccGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTGAAGAAGTTGAAGAGAAGc                  >  2:413440/1‑138 (MQ=255)

                                                                                                                     agccagccGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTGAAGAAGTTGAAGAGAAGc                  <  1:413440/138‑1 (MQ=255)

                                                                                                                     agccagccGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTGAAGAAGTTGAAGAGAAGCGa                <  1:1022071/140‑1 (MQ=255)

                                                                                                                       ccagccGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTGAAGAAGTTGAAGAGAAGCGAGc              >  1:1074631/1‑140 (MQ=255)

                                                                                                                            cGCTCAGGAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTGAAGAAGTTGAAGAGAAGCGAGCCcgtg         <  2:895431/140‑1 (MQ=255)

                                                                                                                                   gAGCAGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCATGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTGAAGAAGTTGAAGAGAAGCGAGCCcgtgaacgtga  <  2:77505/140‑1 (MQ=255)

AGCCGTATTATGCCCCTGCGCCAGAACAACCGGTGGCAGGTAACGCCTGGCAAGCCGAAGAGCAGCAATCCACTTTTGCTCCACAGTCTACATACCAGACTGAGCAAACTTATCAGCAGCCAGCCGCTCAGGAGCCGTTGTACCAACAGCCGCAACCCGTTGAACAGCAGCCTGTTGTGGAGCCTGAACCCGTTGTAGAAGAGACAAAACCCGCGCGTCCGCCGCTTTACTACTTTGAAGAAGTTGAAGAGAAGCGAGCCCGTGAACGTGA  >  NC_000913/934476‑934746

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A