Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	938,650	G→T	A219A (GCG→GCT)	rarA →	recombination factor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	938,650	0	G	T	100.0%	451.7 / NA	130	A219A (GCG→GCT)	rarA	recombination factor
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (63/67); total (63/67)

Only 100 of 134 total aligned reads displayed.

TAACTCAGGCGATGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGT  >  NC_000913/938514‑938786

      aGGCGATGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGcc                                                                                                                                 >  1:1578278/1‑140 (MQ=255)

       ggCGATGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGTTGATATGGCCg                                                                                                                                >  2:138749/1‑140 (MQ=255)

       ggCGATGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGcct                                                                                                                                >  2:979806/1‑139 (MQ=255)

       ggCGATGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCg                                                                                                                                >  2:69184/1‑140 (MQ=255)

       ggCGATGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCg                                                                                                                                <  2:436187/140‑1 (MQ=255)

       ggCGATGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCg                                                                                                                                <  2:204976/140‑1 (MQ=255)

        gCGATGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGa                                                                                                                               >  1:1173343/1‑140 (MQ=255)

        gCGATGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGa                                                                                                                               >  2:2082327/1‑140 (MQ=255)

        gCGATGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGa                                                                                                                               >  2:1919876/1‑140 (MQ=255)

        gCGATGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGa                                                                                                                               >  1:692816/1‑140 (MQ=255)

        gCGATGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGa                                                                                                                               >  1:350680/1‑140 (MQ=255)

         cGATGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGaa                                                                                                                              <  1:1337692/140‑1 (MQ=255)

            tGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTc                                                                                                                           >  2:544782/1‑140 (MQ=255)

            tGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTc                                                                                                                           >  1:583560/1‑140 (MQ=255)

                 gACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCgatga                                                                                                                      <  2:1340831/140‑1 (MQ=255)

                 aaCAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCgatga                                                                                                                      <  2:1173343/139‑1 (MQ=255)

                  aCAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCgatgat                                                                                                                     <  1:886619/140‑1 (MQ=255)

                  aCAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCgatgat                                                                                                                     <  1:1372877/140‑1 (MQ=255)

                    aaaaCCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAg                                                                                                                   <  2:1130547/140‑1 (MQ=255)

                    aaaaCCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGACATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAg                                                                                                                   <  2:1352201/140‑1 (MQ=255)

                          cGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTaa                                                                                                             <  1:936948/140‑1 (MQ=255)

                          cGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTaa                                                                                                             <  1:544782/140‑1 (MQ=255)

                            tGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGc                                                                                                           <  1:1512022/140‑1 (MQ=255)

                             ggCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCg                                                                                                          >  1:383965/1‑140 (MQ=255)

                                   ggtggtCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCt                                                                                                    <  2:1549094/140‑1 (MQ=255)

                                   ggtggtCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCt                                                                                                    <  2:2131397/140‑1 (MQ=255)

                                     tggtCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGa                                                                                                  <  2:1730110/140‑1 (MQ=255)

                                       gtCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAg                                                                                                >  2:369400/1‑140 (MQ=255)

                                       gtCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAg                                                                                                >  2:551812/1‑140 (MQ=255)

                                        tCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGc                                                                                               >  1:1871940/1‑140 (MQ=255)

                                        tCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGc                                                                                               >  2:135302/1‑140 (MQ=255)

                                         cAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGc                                                                                               >  2:57773/1‑139 (MQ=255)

                                                 tGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTAc                                                                                      >  2:2135902/1‑140 (MQ=255)

                                                   ttCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTg                                                                                    >  1:1375192/1‑140 (MQ=255)

                                                   ttCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTg                                                                                    >  2:505905/1‑140 (MQ=255)

                                                   ttCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTg                                                                                    >  2:348366/1‑140 (MQ=255)

                                                      tGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGAcc                                                                                 >  2:202699/1‑140 (MQ=255)

                                                      tGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGAcc                                                                                 >  1:1285633/1‑140 (MQ=255)

                                                      tGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGAcc                                                                                 >  2:1633436/1‑140 (MQ=255)

                                                            aTGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAAt                                                                            <  2:1844270/139‑1 (MQ=255)

                                                            aTGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATc                                                                           >  1:142867/1‑140 (MQ=255)

                                                             tGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCg                                                                          <  1:551812/140‑1 (MQ=255)

                                                             tGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCg                                                                          <  1:369400/140‑1 (MQ=255)

                                                                    cgacgCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGa                                                                   >  2:1629075/1‑140 (MQ=255)

                                                                    cgacgCACCATTGCTGAACTGGTGAATGGCGACCCGCGCCGGGCGCTAAATACGCTGGAAATGAGGCCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGa                                                                   >  2:263917/1‑140 (MQ=255)

                                                                       cgcgCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACg                                                                >  1:1072678/1‑140 (MQ=255)

                                                                         cgcCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTa                                                              >  2:1643518/1‑140 (MQ=255)

                                                                          gcCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAg                                                             >  1:133561/1‑140 (MQ=255)

                                                                            cATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAgcg                                                           <  1:66344/140‑1 (MQ=255)

                                                                              ttGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGCCCGAAATCGCCGGTGAACGTAGCGcc                                                         <  2:1503470/140‑1 (MQ=255)

                                                                              ttGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGcc                                                         <  1:1897599/140‑1 (MQ=255)

                                                                                 cTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGc                                                      <  2:813540/140‑1 (MQ=255)

                                                                                 cTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGc                                                      >  1:2056152/1‑140 (MQ=255)

                                                                                  tGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGTTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCt                                                     <  1:138749/140‑1 (MQ=255)

                                                                                  tGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCt                                                     <  2:1225697/140‑1 (MQ=255)

                                                                                  tGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCt                                                     <  1:954669/140‑1 (MQ=255)

                                                                                   gAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCtt                                                    <  1:2135902/140‑1 (MQ=255)

                                                                                    aaCTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGGACGTAGCGCCCGCttt                                                   <  2:142867/140‑1 (MQ=255)

                                                                                    aaCTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCttt                                                   <  1:1643518/140‑1 (MQ=255)

                                                                                    aaCTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCttt                                                   <  2:903257/140‑1 (MQ=255)

                                                                                    aaCTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCttt                                                   <  1:624790/140‑1 (MQ=255)

                                                                                    aaCTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCttt                                                   >  1:917666/1‑140 (MQ=255)

                                                                                    aaCTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCAAAATCGCCGGTGAACGTAGCGCCCGCttt                                                   <  2:1578278/140‑1 (MQ=255)

                                                                                    aaCTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAATCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCttt                                                   <  2:1749984/140‑1 (MQ=255)

                                                                                         gTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATaa                                              >  2:470528/1‑140 (MQ=255)

                                                                                         gTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATaa                                              >  2:1573887/1‑140 (MQ=255)

                                                                                         gTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATaa                                              >  2:177326/1‑140 (MQ=255)

                                                                                         gTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATaa                                              >  1:1442927/1‑140 (MQ=255)

                                                                                         gTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATaa                                              >  2:1960045/1‑140 (MQ=255)

                                                                                         gTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATaa                                              >  2:2047630/1‑140 (MQ=255)

                                                                                           gAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACa                                            >  2:795655/1‑140 (MQ=255)

                                                                                              tGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGCCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAg                                         >  1:846862/1‑140 (MQ=255)

                                                                                                gCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGc                                       <  1:340335/140‑1 (MQ=255)

                                                                                                   aCGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGAt                                    <  1:336045/140‑1 (MQ=255)

                                                                                                   aCGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGAt                                    >  2:1146505/1‑140 (MQ=255)

                                                                                                   aCGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGAt                                    <  1:115768/140‑1 (MQ=255)

                                                                                                    cgcgcgCCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATc                                   >  1:1711195/1‑140 (MQ=255)

                                                                                                      cgcgcCGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCgt                                 >  2:210232/1‑139 (MQ=255)

                                                                                                          ccGGGCGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCtttt                             <  1:202699/140‑1 (MQ=255)

                                                                                                               cGTTAAATACGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGAt                        <  1:1820116/140‑1 (MQ=255)

                                                                                                               agTTAAATACGCAGGAAATGATGACTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGATCGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGAt                        <  2:1275114/139‑1 (MQ=255)

                                                                                                                       aCGCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTc                >  1:1049561/1‑140 (MQ=255)

                                                                                                                         gCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCg              <  1:1633436/140‑1 (MQ=255)

                                                                                                                         gCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCg              <  1:470528/140‑1 (MQ=255)

                                                                                                                         gCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCg              <  1:1146505/140‑1 (MQ=255)

                                                                                                                         gCTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCg              <  2:692816/140‑1 (MQ=255)

                                                                                                                          cTGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGc             <  2:917666/140‑1 (MQ=255)

                                                                                                                           tGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGcc            >  2:734219/1‑139 (MQ=255)

                                                                                                                           tGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCa            <  2:909722/140‑1 (MQ=255)

                                                                                                                           tGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCa            <  1:1919876/140‑1 (MQ=255)

                                                                                                                           tGGAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCa            >  1:1121534/1‑140 (MQ=255)

                                                                                                                            ggAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCAc           >  1:1693389/1‑140 (MQ=255)

                                                                                                                             gAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCa            >  1:2121501/1‑138 (MQ=255)

                                                                                                                             gAAATGATGGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCa            <  2:2121501/138‑1 (MQ=255)

                                                                                                                                   atgGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATaa    >  2:361841/1‑140 (MQ=255)

                                                                                                                                   atgGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATaa    <  1:795655/140‑1 (MQ=255)

                                                                                                                                   atgGCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATaa    >  2:968186/1‑140 (MQ=255)

                                                                                                                                     ggCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGt  <  2:841144/140‑1 (MQ=255)

                                                                                                                                     ggCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGt  <  1:806305/140‑1 (MQ=255)

                                                                                                                                     ggCTGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGt  <  1:845248/140‑1 (MQ=255)

TAACTCAGGCGATGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGT  >  NC_000913/938514‑938786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A