Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A13 F48 I1 R1	62	147.6	5031800	99.1%	4986513	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	938,930	G→C	V313L (GTG→CTG)	rarA →	recombination factor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	938,930	0	G	C	100.0%	620.2 / NA	156	V313L (GTG→CTG)	rarA	recombination factor
Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (93/63); total (93/63)

Only 100 of 158 total aligned reads displayed.

GGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCT  >  NC_000913/938795‑939063

ggTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGc                                                                                                                                   >  1:1283632/1‑140 (MQ=255)

 gcaGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCa                                                                                                                                  >  1:2220161/3‑140 (MQ=255)

         cccGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGc                                                                                                                          >  2:2237022/1‑140 (MQ=255)

         cccGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGc                                                                                                                          <  2:902460/140‑1 (MQ=255)

         cccGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGc                                                                                                                          >  2:1460364/1‑140 (MQ=255)

          ccGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGcc                                                                                                                         >  2:1493554/1‑140 (MQ=255)

            gATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTg                                                                                                                       >  1:1653055/1‑140 (MQ=255)

                  gcgcTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTg                                                                                                                 >  1:1286325/1‑140 (MQ=255)

                  gcgcTGTACTGGCATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTg                                                                                                                 >  1:932849/1‑140 (MQ=255)

                        tACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTAc                                                                                                           >  1:1514942/1‑140 (MQ=255)

                             gTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTcgcg                                                                                                      >  1:697159/1‑140 (MQ=255)

                                  cgcgAATTATTACCGCTGGTGGCTATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGc                                                                                                 >  1:2375448/1‑140 (MQ=255)

                                  cgcgAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGTCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGc                                                                                                 >  2:2396514/1‑140 (MQ=255)

                                  cgcgAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGc                                                                                                 >  1:1755316/1‑140 (MQ=255)

                                  cgcgAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGc                                                                                                 >  1:51832/1‑140 (MQ=255)

                                  cgcgAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGc                                                                                                 >  1:259578/1‑140 (MQ=255)

                                  cgcgAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGc                                                                                                 >  2:217125/1‑140 (MQ=255)

                                  cgcgAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGc                                                                                                 >  2:2278296/1‑140 (MQ=255)

                                  cgcgAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGc                                                                                                 >  2:790904/1‑140 (MQ=255)

                                  cgcgAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGc                                                                                                 >  2:799513/1‑140 (MQ=255)

                                  cgcgAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGc                                                                                                 >  2:957948/1‑140 (MQ=255)

                                  cgcgAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGc                                                                                                 >  1:1198103/1‑140 (MQ=255)

                                  cgcgAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGc                                                                                                 >  1:1109446/1‑140 (MQ=255)

                                       attattACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCcggc                                                                                            >  2:553635/1‑140 (MQ=255)

                                       attattACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAAAGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCcggc                                                                                            >  1:1566662/1‑140 (MQ=255)

                                         tattaCCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCcggcgg                                                                                          <  2:1036537/140‑1 (MQ=255)

                                                 cTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGaa                                                                                  >  2:1788529/1‑140 (MQ=255)

                                                 cTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGaa                                                                                  <  2:1653055/140‑1 (MQ=255)

                                                 cTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGaa                                                                                  >  2:1005144/1‑140 (MQ=255)

                                                 cTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGaa                                                                                  >  1:1905329/1‑140 (MQ=255)

                                                 cTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGaa                                                                                  <  1:2021964/140‑1 (MQ=255)

                                                     tggCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAAcgcg                                                                              <  2:988839/140‑1 (MQ=255)

                                                        cGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCa                                                                           >  2:375258/1‑140 (MQ=255)

                                                          aTCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCAtt                                                                         >  1:1723584/1‑140 (MQ=255)

                                                             cGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCt                                                                      <  2:2220161/140‑1 (MQ=255)

                                                             cGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCt                                                                      <  2:1283632/140‑1 (MQ=255)

                                                             cGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCt                                                                      <  1:909977/140‑1 (MQ=255)

                                                             cGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCt                                                                      <  2:960296/140‑1 (MQ=255)

                                                              gTTATATGTCGCGCGTCGCTGTCTGGCTATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTc                                                                     >  1:2044640/1‑140 (MQ=255)

                                                              gTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTc                                                                     >  2:658517/1‑140 (MQ=255)

                                                                 atatGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAgg                                                                  <  2:2442324/140‑1 (MQ=255)

                                                                  tatGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGc                                                                 <  2:1905329/140‑1 (MQ=255)

                                                                     gTCGCGCGTCGCTGTTTGGCGTTTGCGTCTGAAGACGTCGGTAATGCCGATCCTCGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGATCAGGCGAt                                                              >  2:2108541/1‑140 (MQ=255)

                                                                     gTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGAt                                                              >  1:2402446/1‑140 (MQ=255)

                                                                     gTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGAt                                                              >  2:1262813/1‑140 (MQ=255)

                                                                      tCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGAtt                                                             >  2:1980666/1‑140 (MQ=255)

                                                                      tCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGAtt                                                             >  1:1583867/1‑140 (MQ=255)

                                                                      tCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGAtt                                                             >  2:2343324/1‑140 (MQ=255)

                                                                       cgcgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCa                                                                           >  2:485797/1‑125 (MQ=255)

                                                                       cgcgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGAttt                                                            >  2:798367/1‑139 (MQ=255)

                                                                       cgcgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTg                                                            >  1:1601874/1‑140 (MQ=255)

                                                                       cgcgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTg                                                            >  2:576359/1‑140 (MQ=255)

                                                                       cgcgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTg                                                            <  1:1262813/140‑1 (MQ=255)

                                                                       cgcgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTg                                                            <  1:375258/140‑1 (MQ=255)

                                                                       cgcgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTg                                                            >  1:1293338/1‑140 (MQ=255)

                                                                       cgcgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTg                                                            >  1:397226/1‑140 (MQ=255)

                                                                       cgcgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTg                                                            <  1:528347/140‑1 (MQ=255)

                                                                       cgcgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTg                                                            >  1:836846/1‑140 (MQ=255)

                                                                       cgcgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTg                                                            >  1:795982/1‑140 (MQ=255)

                                                                       cgcgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTg                                                            <  2:765294/140‑1 (MQ=255)

                                                                       cgcgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTg                                                            <  1:1816272/140‑1 (MQ=255)

                                                                        gcgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGt                                                           >  2:2501726/1‑140 (MQ=255)

                                                                        gcgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGt                                                           >  1:1772289/1‑140 (MQ=255)

                                                                         cgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGtt                                                          >  2:553168/1‑140 (MQ=255)

                                                                         cgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGtt                                                          >  1:1822181/1‑140 (MQ=255)

                                                                         cgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGtt                                                          >  2:1914687/1‑140 (MQ=255)

                                                                         cgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGtt                                                          >  1:2323019/1‑140 (MQ=255)

                                                                         cgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGtt                                                          >  1:844975/1‑140 (MQ=255)

                                                                         cgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGtt                                                          >  2:2436231/1‑140 (MQ=255)

                                                                         cgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGtt                                                          >  2:2445773/1‑140 (MQ=255)

                                                                         cgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGtt                                                          >  1:2496489/1‑140 (MQ=255)

                                                                         cgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAAGCGAACGCTCCAGTGCTCTGGCAATTggt                                                          >  1:1874456/1‑138 (MQ=255)

                                                                                      ggCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTgcg                                             <  2:508815/140‑1 (MQ=255)

                                                                                        cGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTgcgcg                                           <  1:2445773/140‑1 (MQ=255)

                                                                                           ttGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCa                                        <  1:1005144/140‑1 (MQ=255)

                                                                                                 cTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGc                                  >  1:1938025/1‑140 (MQ=255)

                                                                                                  tGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCa                                 <  1:1914687/140‑1 (MQ=255)

                                                                                                  tGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCa                                 <  2:37383/140‑1 (MQ=255)

                                                                                                    aaGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAAc                               <  1:2278296/140‑1 (MQ=255)

                                                                                                    aaGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAAc                               <  2:1822181/140‑1 (MQ=255)

                                                                                                    aaGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAAc                               <  2:844975/140‑1 (MQ=255)

                                                                                                    aaGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAAc                               <  1:560760/140‑1 (MQ=255)

                                                                                                    aaGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAAc                               <  1:658517/140‑1 (MQ=255)

                                                                                                    aaGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAAc                               <  2:51832/140‑1 (MQ=255)

                                                                                                    aaGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAAc                               <  2:1198103/140‑1 (MQ=255)

                                                                                                    aaGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAAc                               <  2:1286325/140‑1 (MQ=255)

                                                                                                    aaGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAAc                               <  2:1514731/140‑1 (MQ=255)

                                                                                                    aaGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAAc                               <  2:1723584/140‑1 (MQ=255)

                                                                                                     aGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACg                              <  2:697159/140‑1 (MQ=255)

                                                                                                      gACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGc                             <  2:1514942/140‑1 (MQ=255)

                                                                                                      gACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGc                             <  1:2237022/140‑1 (MQ=255)

                                                                                                           cGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAAc                               >  1:1928005/1‑133 (MQ=255)

                                                                                                              tAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTaca                     <  1:957948/140‑1 (MQ=255)

                                                                                                              tAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTaca                     <  1:217125/140‑1 (MQ=255)

                                                                                                              tAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTaca                     <  1:1502934/140‑1 (MQ=255)

                                                                                                              tAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTaca                     >  2:915668/1‑140 (MQ=255)

                                                                                                                aTGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACt                   <  1:559946/140‑1 (MQ=255)

                                                                                                                        ccACGGGCGATGCAGCTGGCAATTGCGGCATGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCCCCATTGCTCAGGCGATTGTTTACCTGGCCTCCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTTaa           >  2:1219545/1‑140 (MQ=255)

                                                                                                                         cACGGGCGATGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTTaaa          <  1:50050/140‑1 (MQ=255)

                                                                                                                                 aTGCAGCTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCt  >  2:1609181/1‑140 (MQ=255)

GGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCT  >  NC_000913/938795‑939063

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A