Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F48 I1 R1	70	151.6	5072932	98.7%	5006983	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	231,075	C→A	intergenic (‑194/‑47)	yafC ← / → yafD	putative LysR family transcriptional regulator YafC/endonuclease/exonuclease/phosphatase domain‑containing protein YafD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	231,075	0	C	A	100.0%	457.3 / NA	127	intergenic (‑194/‑47)	yafC/yafD	putative LysR family transcriptional regulator YafC/endonuclease/exonuclease/phosphatase domain‑containing protein YafD
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (81/46); total (81/46)

Only 100 of 128 total aligned reads displayed.

AGGATGCGTGATATGTCATGCGATTTAATGTTCTCCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAG  >  NC_000913/230940‑231211

aGGATGCGTGATATGTCATGCGATTTAATGTTCTCCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATccc                                                                                                                                      <  2:1313669/140‑1 (MQ=255)

    tGCGTGATATGTCATGCGATTTAATGTTCTCCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGt                                                                                                                                  <  2:2433620/140‑1 (MQ=255)

      cGTGATATGTCATGCGATTTAATGTTCTCCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCg                                                                                                                                     >  1:1874624/1‑135 (MQ=255)

      cGTGATATGTCATGCGATTTAATGTTCTCCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGc                                                                                                                                >  2:525480/1‑140 (MQ=255)

      cGTGATATGTCATGCGATTTAATGTTCTCCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGc                                                                                                                                >  2:1094526/1‑140 (MQ=255)

      cGTGATATGTCATGCGATTTAATGTTCTCCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGc                                                                                                                                >  1:2073448/1‑140 (MQ=255)

        tGATATGTCATGCGATTTAATGTTCTCCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCgg                                                                                                                              <  2:2170259/140‑1 (MQ=255)

            atGTCATGCGATTTAATGTTCTCCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAgg                                                                                                                          >  1:934451/1‑140 (MQ=255)

              gTCATGCGATTTAATGTTCTCCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGt                                                                                                                        <  1:1094526/140‑1 (MQ=255)

              gTCATGCGATTTAATGTTCTCCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGt                                                                                                                        <  2:2182491/140‑1 (MQ=255)

              gTCATGCGATTTAATGTTCTCCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGt                                                                                                                        <  2:1258330/140‑1 (MQ=255)

                cATGCGATTTAATGTTCTCCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTg                                                                                                                      <  1:272476/140‑1 (MQ=255)

                aaTGCGATTTAATGTTCTCCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTg                                                                                                                      <  2:357909/139‑1 (MQ=255)

                 aTGCGATTTAATGTTCTCCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGa                                                                                                                     <  2:719399/140‑1 (MQ=255)

                  tGCGATTTAATGTTCTCCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAggg                                                                                                                         >  1:37346/1‑135 (MQ=255)

                  tGCGATTTAATGTTCTCCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAggg                                                                                                                         <  2:37346/135‑1 (MQ=255)

                  tGCGATTTAATGTTCTCCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGAc                                                                                                                    >  2:2175728/1‑140 (MQ=255)

                  tGCGATTTAATGTTCTCCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGAc                                                                                                                    >  2:1020914/1‑140 (MQ=255)

                                ctcCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTc                                                                                                      <  2:1727850/140‑1 (MQ=255)

                                 tcCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCa                                                                                                     >  1:1588027/1‑140 (MQ=255)

                                 tcCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCa                                                                                                     >  1:2442633/1‑140 (MQ=255)

                                    aTAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAg                                                                                                  >  1:249428/1‑140 (MQ=255)

                                       aTGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCa                                                                                               >  1:1397373/1‑140 (MQ=255)

                                          aGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCaaaa                                                                                            >  2:1328643/1‑140 (MQ=255)

                                          aGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCaaaa                                                                                            >  1:510263/1‑140 (MQ=255)

                                          aGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCaaaa                                                                                            >  1:119847/1‑140 (MQ=255)

                                          aGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCaaaa                                                                                            >  1:2366591/1‑140 (MQ=255)

                                           gCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAg                                                                                           >  1:983055/1‑140 (MQ=255)

                                           gCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAg                                                                                           >  2:2494245/1‑140 (MQ=255)

                                           gCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAg                                                                                           >  1:1172616/1‑140 (MQ=255)

                                                  tCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGaaa                                                                                    <  1:1199951/140‑1 (MQ=255)

                                                     gACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGaaaaaa                                                                                 <  1:194956/140‑1 (MQ=255)

                                                     gACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGaaaaaa                                                                                 <  1:867119/140‑1 (MQ=255)

                                                      aCCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAac                                                                                >  1:1638027/1‑140 (MQ=255)

                                                         ggTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACAcc                                                                             >  2:1386945/1‑140 (MQ=255)

                                                          gtgtAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCt                                                                            <  2:1611960/140‑1 (MQ=255)

                                                            gtAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTAt                                                                          <  1:2494245/140‑1 (MQ=255)

                                                             tAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATg                                                                         <  2:249428/140‑1 (MQ=255)

                                                               aGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGcc                                                                       <  2:510263/140‑1 (MQ=255)

                                                               aGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGcc                                                                       <  2:1588027/140‑1 (MQ=255)

                                                                  aCTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATg                                                                    <  1:1052747/140‑1 (MQ=255)

                                                                    ttGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATgcg                                                                  >  1:1452127/1‑140 (MQ=255)

                                                                     tGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATgcgc                                                                 >  2:2243152/1‑140 (MQ=255)

                                                                     tGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATgcgc                                                                 >  2:2240122/1‑140 (MQ=255)

                                                                     tGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATgcgc                                                                 >  2:293362/1‑140 (MQ=255)

                                                                     tGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATgcgc                                                                 >  2:301564/1‑140 (MQ=255)

                                                                     tGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATgcgc                                                                 >  1:1000362/1‑140 (MQ=255)

                                                                         tACATAACAATAGACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCGGAGCGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTTCGAAAAAACACCTATGCCATGCGCTATg                                                             >  2:2379278/1‑140 (MQ=255)

                                                                                  atatACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGAc                                                    <  2:1000362/140‑1 (MQ=255)

                                                                                     taCAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAAc                                                 >  1:1798323/1‑140 (MQ=255)

                                                                                     taCAATTGCTCATTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAAc                                                 >  2:1993729/1‑140 (MQ=255)

                                                                                      aCAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAAcc                                                >  1:1475225/1‑140 (MQ=255)

                                                                                        aaTTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTCTGCCATGCGCTATGTTGCCGGACAACCTg                                              <  1:2243152/140‑1 (MQ=255)

                                                                                        aaTTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTg                                              >  2:1504552/1‑140 (MQ=255)

                                                                                        aaTTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTg                                              >  1:496222/1‑140 (MQ=255)

                                                                                        aaTTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTg                                              >  1:2032461/1‑140 (MQ=255)

                                                                                        aaTTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTg                                              <  1:482376/140‑1 (MQ=255)

                                                                                          ttGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCg                                            >  1:2267083/1‑140 (MQ=255)

                                                                                          ttGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCg                                            >  1:1451427/1‑140 (MQ=255)

                                                                                          ttGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCg                                            >  2:240534/1‑140 (MQ=255)

                                                                                          ttGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCg                                            >  1:1651876/1‑140 (MQ=255)

                                                                                          ttGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCg                                            >  2:1182793/1‑140 (MQ=255)

                                                                                          ttGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCg                                            >  1:989841/1‑140 (MQ=255)

                                                                                            gCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGa                                          <  2:1103883/140‑1 (MQ=255)

                                                                                            gCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGa                                          >  2:615932/1‑140 (MQ=255)

                                                                                             cTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGaa                                         >  1:406416/1‑140 (MQ=255)

                                                                                             cTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGaa                                         >  2:1259173/1‑140 (MQ=255)

                                                                                             cTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGaa                                         >  1:314534/1‑140 (MQ=255)

                                                                                             cTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGaa                                         >  2:1992093/1‑140 (MQ=255)

                                                                                             cTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGaa                                         >  2:1931201/1‑140 (MQ=255)

                                                                                              tCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGaaa                                        >  2:1097356/1‑140 (MQ=255)

                                                                                               cGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAg                                       >  1:1350708/1‑140 (MQ=255)

                                                                                                  tGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGAt                                    >  2:268860/1‑140 (MQ=255)

                                                                                                      agagTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTa                                >  2:510787/1‑140 (MQ=255)

                                                                                                         gTGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTAccg                             >  2:1124580/1‑140 (MQ=255)

                                                                                                          tGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTAccgc                            >  1:286522/1‑140 (MQ=255)

                                                                                                          tGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTAccgc                            >  1:2264988/1‑140 (MQ=255)

                                                                                                          tGAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTAccgc                            >  1:39779/1‑140 (MQ=255)

                                                                                                           gAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTAccgcc                           <  2:496222/140‑1 (MQ=255)

                                                                                                           gAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTAccgcc                           <  1:759794/140‑1 (MQ=255)

                                                                                                           gAGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTAccgcc                           >  1:2351611/1‑140 (MQ=255)

                                                                                                            aGCTAAATTCCCTATAACAGTAGAACCCTCCCGAGTGCGGAATGGTAGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTAccgccg                          >  2:63857/1‑140 (MQ=255)

                                                                                                            aGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTAccgccg                          >  1:489758/1‑140 (MQ=255)

                                                                                                            aGCTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTAccgccg                          >  2:462602/1‑140 (MQ=255)

                                                                                                              cTAAAATCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCggg                        >  1:2491542/1‑140 (MQ=255)

                                                                                                                aaaaTCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGt                      <  2:268334/140‑1 (MQ=255)

                                                                                                                  aaTCCCTATAACAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCt                    <  1:2240122/140‑1 (MQ=255)

                                                                                                                            aCAGTAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCa          <  1:1182793/140‑1 (MQ=255)

                                                                                                                                tAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCgg      >  1:1694512/1‑140 (MQ=255)

                                                                                                                                tAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCgg      >  2:2507922/1‑140 (MQ=255)

                                                                                                                                tAGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCgg      >  1:2132497/1‑140 (MQ=255)

                                                                                                                                 aGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGc     <  1:1328643/140‑1 (MQ=255)

                                                                                                                                 aGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGc     <  1:293362/140‑1 (MQ=255)

                                                                                                                                 aGAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGc     <  1:2086061/140‑1 (MQ=255)

                                                                                                                                  gAACCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGcc    >  1:240296/1‑140 (MQ=255)

                                                                                                                                    aCCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAg  <  1:1020914/140‑1 (MQ=255)

                                                                                                                                    aCCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAg  <  2:1709311/140‑1 (MQ=255)

                                                                                                                                    aCCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAg  >  2:1708491/1‑140 (MQ=255)

                                                                                                                                    aCCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAg  <  2:1705726/140‑1 (MQ=255)

                                                                                                                                    aCCATCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAg  <  2:1451427/140‑1 (MQ=255)

AGGATGCGTGATATGTCATGCGATTTAATGTTCTCCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAG  >  NC_000913/230940‑231211

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A