Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F48 I1 R1
|
508 |
125.6 |
4303852 |
99.2% |
4269421 |
139.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
233,752 |
C→A |
K68N (AAG→AAT) |
mltD ← |
membrane‑bound lytic murein transglycosylase D |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 233,752 | 0 | C | A | 99.2%
| 434.3
/ ‑3.3
| 130 | K68N (AAG→AAT) | mltD | membrane‑bound lytic murein transglycosylase D |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base A (67/61); total (68/62) |
| Fisher's exact test for biased strand distribution p-value = 4.81e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.84e-01 |
Only 100 of 133 total aligned reads displayed.
ATGTTACGTTTTTTAACTTGCCCTGCTATCCAGTACATATACGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGAAAGGCTCTGTGCG > NC_000913/233615‑233881
|
aTGTTACGTTTTTTAACTTGCCCTGCTATCCAGTACATATACGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATAtt > 1:1317938/1‑140 (MQ=255)
tGTTACGTTTTTTAACTTGCCCTGCTATCCAGTACATATACGGCTCTTCCCGTAAAGTTACATCGTGGAGATAGCGCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATAttt > 2:1747725/1‑140 (MQ=255)
gTTACGTTTTTTAACTTGCCCTGCTATCCAGTACATATACGGCTCAGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTa > 2:1619734/1‑140 (MQ=255)
ttACGTTTTTTAACTTGCCCTGCTATCCAGTACATATACGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAg > 1:1084253/1‑140 (MQ=255)
aCGTTTTTTAACTTGCCCTGCTATCCAGTACATATACGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCt < 1:1187436/140‑1 (MQ=255)
cGTTTTTTAACTTGCCCTGCTATCCAGTACATATACGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCtc < 2:1639440/140‑1 (MQ=255)
ttttAACTTGCCCTGCTATCCAGTACATATACGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCtcgtcg < 1:67770/140‑1 (MQ=255)
tAACTTGCCCTGCTATCCAGTACATATACGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCa > 2:1305391/1‑140 (MQ=255)
ttGCCCTGCTATCCAGTACATATACGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGa < 2:1759943/140‑1 (MQ=255)
tGCCCTGCTATCCAGCACATATACGGCTCTGCCCGTAAAGATACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGaa > 2:632718/1‑140 (MQ=255)
tACATATACGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCAcc > 1:1052032/1‑140 (MQ=255)
tACATATACGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCAcc > 1:66654/1‑140 (MQ=255)
tACATATACGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCAcc > 1:277131/1‑140 (MQ=255)
aatatACGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCAt < 2:1211450/139‑1 (MQ=255)
ataCGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTg > 2:1169097/1‑140 (MQ=255)
ataCGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTg > 2:1745564/1‑140 (MQ=255)
ataCGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTg > 1:387728/1‑140 (MQ=255)
ataCGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTg > 1:1497798/1‑140 (MQ=255)
ataCGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTg > 2:907279/1‑140 (MQ=255)
ataCGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTg < 2:66654/140‑1 (MQ=255)
ataCGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGGTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTg > 1:985655/1‑140 (MQ=255)
taCGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTgg < 1:1832943/140‑1 (MQ=255)
aCGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGgc > 1:83433/1‑140 (MQ=255)
ggCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGgcgc < 1:237821/140‑1 (MQ=255)
ggCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGATCGTCGCCAATGAAAGCCCACAAGTCACCATCTGgcgc > 2:1882728/1‑140 (MQ=255)
gCTCTGCCCGTAAAGTTACATCGTGGTGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCTATATTTAGCTCGTCGCCATTGAAAGCCCACAAGTCACCATCTGgcgct > 2:348971/1‑139 (MQ=255)
gCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCa > 2:29522/1‑128 (MQ=255)
gCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCa < 1:29522/128‑1 (MQ=255)
gCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGgcgct > 2:790726/1‑139 (MQ=255)
gCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGcgcg > 1:1647667/1‑140 (MQ=255)
gCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGcgcg > 1:1145447/1‑140 (MQ=255)
gCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGcgcg > 1:1496086/1‑140 (MQ=255)
gCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGcgcg > 2:1428250/1‑140 (MQ=255)
gCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGcgcg > 1:1623420/1‑140 (MQ=255)
gCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGcgcg > 2:354083/1‑140 (MQ=255)
tctGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGAt < 1:255033/140‑1 (MQ=255)
tctGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGAt > 2:892281/1‑140 (MQ=255)
tctGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGAt < 2:2061921/140‑1 (MQ=255)
tGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAg > 1:1969934/1‑140 (MQ=255)
tGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAg > 1:2093939/1‑140 (MQ=255)
tGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAg > 1:1841509/1‑140 (MQ=255)
tGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAg > 2:2120693/1‑140 (MQ=255)
gCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGa > 1:800689/1‑140 (MQ=255)
cccGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATTTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGAc > 1:783694/1‑140 (MQ=255)
cccGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGAc > 1:576280/1‑140 (MQ=255)
cccGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGAc > 2:1642100/1‑140 (MQ=255)
ccGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACg < 2:854350/140‑1 (MQ=255)
tAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTcc < 2:783694/140‑1 (MQ=255)
aaaGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTccc < 1:632718/140‑1 (MQ=255)
aaaGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTccc < 1:1491337/140‑1 (MQ=255)
aaaGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTccc < 2:1052032/140‑1 (MQ=255)
aGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCAt < 2:274407/140‑1 (MQ=255)
tACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGt > 1:532306/1‑140 (MQ=255)
aTCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGtcca < 2:1521121/140‑1 (MQ=255)
cGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGtccatc > 2:242944/1‑140 (MQ=255)
cGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGtccatc > 2:1881508/1‑140 (MQ=255)
tGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGtccatcca < 2:1339009/140‑1 (MQ=255)
tGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGtccatcca > 1:565315/1‑140 (MQ=255)
tGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGtccatcca < 2:576280/140‑1 (MQ=255)
tGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGtccatcca < 1:1692516/140‑1 (MQ=255)
tGGAGATAGCTCTTA‑TGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTccatccat < 1:1078535/140‑1 (MQ=255)
gagaTAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCcatccatc > 2:1133826/1‑140 (MQ=255)
gagaTAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCcatccatc > 1:1779392/1‑140 (MQ=255)
aTAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTg > 2:2081046/1‑140 (MQ=255)
aTAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTg > 2:1047629/1‑140 (MQ=255)
gCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCt < 2:1496086/140‑1 (MQ=255)
gCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCt < 2:800689/140‑1 (MQ=255)
ctctTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTg > 1:1721147/1‑140 (MQ=255)
ttATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACt > 1:1560338/1‑140 (MQ=255)
tGCGTAAATATTTCTGTTTCTGTTCGCGAATCAGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTa < 1:1882728/140‑1 (MQ=255)
cGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTaaa > 2:1245515/1‑140 (MQ=255)
tAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACt > 1:1914092/1‑140 (MQ=255)
tAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACt > 1:942261/1‑140 (MQ=255)
tAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACt > 2:1975522/1‑140 (MQ=255)
ttctgtttctgtTCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTtgctgc < 2:1914092/140‑1 (MQ=255)
tctgtttctgttCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTgctgct < 1:2120693/140‑1 (MQ=255)
tctgtttctgttCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTgctgct > 1:358766/1‑140 (MQ=255)
tctgtttctgttCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTgctgct < 2:1969934/140‑1 (MQ=255)
tctgtttctgttCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTgctgct < 2:1145447/140‑1 (MQ=255)
tttctgttCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTtg < 1:1413867/131‑1 (MQ=255)
tttctgttCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTtg > 2:1413867/1‑131 (MQ=255)
tttctgttCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTccc > 1:126735/1‑140 (MQ=255)
tttctgttCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTccc > 1:2122319/1‑140 (MQ=255)
ttctgttCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTcccc < 2:822061/140‑1 (MQ=255)
ttctgttCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTcccc > 2:949459/1‑140 (MQ=255)
ttctgttCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTcccc > 2:939233/1‑140 (MQ=255)
tctgttCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCt > 1:623790/1‑140 (MQ=255)
tctgttCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCt > 1:222633/1‑140 (MQ=255)
tgttCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTg < 1:1619734/140‑1 (MQ=255)
ttCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGAc > 1:935251/1‑140 (MQ=255)
ttCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGAc < 1:939233/140‑1 (MQ=255)
ttCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGAc < 2:1497798/140‑1 (MQ=255)
ttCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGAc < 2:1841509/140‑1 (MQ=255)
tCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGAcc < 1:278216/140‑1 (MQ=255)
tCGCGAATCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGAcc < 2:875977/140‑1 (MQ=255)
acaaaTCCGGTCATTTTCCGAAATTCCAATATTAAGCTCGTCGCAAATGAAAGCCCAAAAGCCCCAAACGGGCGCGATAGACGT‑CCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGc < 2:906615/137‑1 (MQ=255)
aaTCCGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTg < 2:942261/140‑1 (MQ=255)
cGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGa < 1:1155217/140‑1 (MQ=255)
cGGTCATTTTCCGGAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGa < 2:277131/140‑1 (MQ=255)
gAATTCCCATATTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGAAAGGCTCTgtgcg < 1:1133826/140‑1 (MQ=255)
|
ATGTTACGTTTTTTAACTTGCCCTGCTATCCAGTACATATACGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGAAAGGCTCTGTGCG > NC_000913/233615‑233881
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
