Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F48 I1 R1 70 151.6 5072932 98.7% 5006983 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 676,177 T→A Q124L (CAG→CTG)  ybeQ ← Sel1 repeat‑containing protein YbeQ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913676,1770TA100.0% 584.8 / NA 161Q124L (CAG→CTG) ybeQSel1 repeat‑containing protein YbeQ
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (88/73);  total (88/73)

Only 100 of 162 total aligned reads displayed.

CGTCACTATGGCCTTGTAATGCAGCTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCTGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATTAT  >  NC_000913/676040‑676306
                                                                                                                                         |                                                                                                                                  
cgTCACTATGGCCTTGTAATGCAGCTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGa                                                                                                                                  <  1:41763/140‑1 (MQ=255)
  tCACTATGGCCTTGTAATGCAGCTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATa                                                                                                                                <  2:2256790/140‑1 (MQ=255)
   cACTATGGCCTTGTAATGCAGCTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATAc                                                                                                                               >  1:1333420/1‑140 (MQ=255)
           ccTTGTAATGCAGCTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGGTATCAGATACCAGACAAc                                                                                                                       <  1:1649388/140‑1 (MQ=255)
           ccTTGTAATGCAGCTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAAc                                                                                                                       <  2:2224857/140‑1 (MQ=255)
             ttGTAATGCAGCTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCg                                                                                                                     >  1:1301919/1‑140 (MQ=255)
             ttGTAATGCAGCTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCg                                                                                                                     >  2:602864/1‑140 (MQ=255)
              tGTAATGCAGCTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGc                                                                                                                    >  2:112738/1‑140 (MQ=255)
              tGTAATGCAGCTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGc                                                                                                                    <  2:1633483/140‑1 (MQ=255)
              tGTAATGCAGCTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGc                                                                                                                    <  2:503666/140‑1 (MQ=255)
              tGTAATGCAGCTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGAATAGTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAGCCGc                                                                                                                    <  2:21229/140‑1 (MQ=255)
               gTAATGCAGCTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTCGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGct                                                                                                                   >  2:2287918/1‑140 (MQ=255)
                tAATGCAGCTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGctt                                                                                                                  >  2:2211219/1‑140 (MQ=255)
                tAATGCAGCTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGctt                                                                                                                  >  2:331088/1‑140 (MQ=255)
                tAATGCAGCTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGctt                                                                                                                  >  1:1715359/1‑140 (MQ=255)
                tAATGCAGCTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGctt                                                                                                                  >  1:109498/1‑140 (MQ=255)
                    gCAGCTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑ttt                                                                                                             >  1:1081586/1‑140 (MQ=255)
                     cAGCTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑tttt                                                                                                            >  2:2039454/1‑139 (MQ=255)
                     cAGCTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTta                                                                                                            >  2:2291669/1‑140 (MQ=255)
                     cAGCTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTta                                                                                                            >  2:2438943/1‑140 (MQ=255)
                     cAGCTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTta                                                                                                            >  1:1229870/1‑140 (MQ=255)
                        cTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATaa                                                                                                         >  2:477162/1‑140 (MQ=255)
                        cTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATaa                                                                                                         >  2:676899/1‑140 (MQ=255)
                          tgtttgtACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAAtt                                                                                                       <  2:1242698/140‑1 (MQ=255)
                          tgtttgtACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAAtt                                                                                                       >  2:1918103/1‑140 (MQ=255)
                             ttgtACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTggg                                                                                                    <  2:165146/140‑1 (MQ=255)
                               gtACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTggggg                                                                                                  <  1:720061/140‑1 (MQ=255)
                                  ccAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCtt                                                                                               >  2:1047990/1‑140 (MQ=255)
                                  ccAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCtt                                                                                               <  1:569414/140‑1 (MQ=255)
                                  ccAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCtt                                                                                               >  1:304170/1‑140 (MQ=255)
                                  acAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCtt                                                                                               <  2:1059303/139‑1 (MQ=255)
                                  acAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCtt                                                                                               <  2:868718/139‑1 (MQ=255)
                                      aaaaaTGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTcc                                                                                           >  2:874984/1‑140 (MQ=255)
                                       aaaaTGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCCCCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCa                                                                                          <  1:1789031/140‑1 (MQ=255)
                                       aaaaTGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCa                                                                                          <  2:2261040/140‑1 (MQ=255)
                                       aaaaTGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCa                                                                                          <  1:112738/140‑1 (MQ=255)
                                         aaTGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAAGTGGGGGCTTCTCCACg                                                                                        <  1:602864/140‑1 (MQ=255)
                                               aGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAg                                                                                  >  1:1631092/1‑140 (MQ=255)
                                                  gcATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAgtgt                                                                               <  1:63258/140‑1 (MQ=255)
                                                   aaTAGTCTTTTGCAACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTc                                                                              <  2:319188/139‑1 (MQ=255)
                                                        tCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGcc                                                                         <  2:2456707/140‑1 (MQ=255)
                                                         cTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCa                                                                        <  1:1281550/140‑1 (MQ=255)
                                                         cTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCa                                                                        <  1:686541/140‑1 (MQ=255)
                                                            ttGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAgg                                                                     >  1:1550217/1‑140 (MQ=255)
                                                            ttGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAgg                                                                     >  2:161067/1‑140 (MQ=255)
                                                             tGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAggg                                                                    >  1:769350/1‑140 (MQ=255)
                                                             tGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAggg                                                                    >  1:1980752/1‑140 (MQ=255)
                                                                 aCTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTCGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGtt                                                                <  1:2287918/140‑1 (MQ=255)
                                                                  cTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTg                                                               >  1:934002/1‑140 (MQ=255)
                                                                  cTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTg                                                               >  2:949102/1‑140 (MQ=255)
                                                                  cTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTg                                                               >  2:598048/1‑140 (MQ=255)
                                                                  cTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTg                                                               >  1:1455121/1‑140 (MQ=255)
                                                                   tCCGTTGCCCTTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTgg                                                              >  2:2266078/1‑140 (MQ=255)
                                                                    ccGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGa                                                             <  2:299487/140‑1 (MQ=255)
                                                                       ttGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGc                                                          <  2:1301919/140‑1 (MQ=255)
                                                                       ttGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGc                                                          <  1:31058/140‑1 (MQ=255)
                                                                         gCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGa                                                        <  1:2439253/140‑1 (MQ=255)
                                                                         gCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGa                                                        <  1:1380773/140‑1 (MQ=255)
                                                                         gCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGa                                                        <  2:1715359/140‑1 (MQ=255)
                                                                            aTTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAg                                                     >  1:962067/1‑140 (MQ=255)
                                                                              ttCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTa                                                   <  1:477162/140‑1 (MQ=255)
                                                                              ttCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTa                                                   <  1:165085/140‑1 (MQ=255)
                                                                              ttCTGTACATCCACCCAAGATTATTTTCCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTa                                                   <  1:1545956/140‑1 (MQ=255)
                                                                                 tGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATgg                                                <  1:1416721/140‑1 (MQ=255)
                                                                                 tGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCATCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATgg                                                <  1:2261434/140‑1 (MQ=255)
                                                                                    aCATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCt                                             >  1:2425969/1‑140 (MQ=255)
                                                                                          aCCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAgg                                       >  2:2033521/1‑140 (MQ=255)
                                                                                          aCCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAgg                                       >  1:858057/1‑140 (MQ=255)
                                                                                           cccAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTCTTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAgg                                       >  2:2226730/1‑140 (MQ=255)
                                                                                             cAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCGGTGTCCAGCCAAGGGCGTTGGAGGGGAAGGTATGCCCTTGAGGGGCa                                    >  2:2473533/1‑140 (MQ=255)
                                                                                             cAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCa                                    >  1:2128552/1‑140 (MQ=255)
                                                                                             cAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCa                                    >  1:2100420/1‑140 (MQ=255)
                                                                                             cAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCa                                    >  1:2028874/1‑140 (MQ=255)
                                                                                             cAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCa                                    >  1:1072350/1‑140 (MQ=255)
                                                                                               aGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGc                                  >  2:2364353/1‑140 (MQ=255)
                                                                                                gATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCt                                 >  2:1122154/1‑140 (MQ=255)
                                                                                                  ttattTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCttt                               >  2:194861/1‑140 (MQ=255)
                                                                                                    attTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCttttt                             >  2:2517743/1‑140 (MQ=255)
                                                                                                      tttGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTc                           >  1:2317437/1‑140 (MQ=255)
                                                                                                        tGCGCATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCac                         >  1:40821/1‑139 (MQ=255)
                                                                                                         gcgcATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGc                        <  1:1257224/140‑1 (MQ=255)
                                                                                                         gcgcATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGc                        <  1:676899/140‑1 (MQ=255)
                                                                                                          cgcATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGcc                       >  2:1489393/1‑140 (MQ=255)
                                                                                                          cgcATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGcc                       <  2:769350/140‑1 (MQ=255)
                                                                                                          cgcATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGcc                       <  1:601555/140‑1 (MQ=255)
                                                                                                           gcATAAGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGACAGCTTTTTTCAGCCa                      >  2:1600073/1‑140 (MQ=255)
                                                                                                               aaGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCagaag                  <  1:2517743/140‑1 (MQ=255)
                                                                                                               aaGACATTCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCagaag                  <  2:213087/140‑1 (MQ=255)
                                                                                                                     ttCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCt            <  1:2117615/140‑1 (MQ=255)
                                                                                                                     ttCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCt            <  1:2266078/140‑1 (MQ=255)
                                                                                                                     ttCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCt            <  1:2039454/140‑1 (MQ=255)
                                                                                                                      tCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCtt           <  1:2211219/140‑1 (MQ=255)
                                                                                                                      tCCGCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCtt           >  1:368021/1‑140 (MQ=255)
                                                                                                                         gCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCt        <  1:259201/140‑1 (MQ=255)
                                                                                                                         gCTCTCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCt        >  2:1333084/1‑140 (MQ=255)
                                                                                                                          ctctCCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTc       >  1:1420381/1‑140 (MQ=255)
                                                                                                                           tctcCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCa      >  2:1641966/1‑140 (MQ=255)
                                                                                                                            ctcCGCGGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCAt     <  1:564334/140‑1 (MQ=255)
                                                                                                                               cgcgGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATTAt  >  1:220046/1‑140 (MQ=255)
                                                                                                                               cgcgGCTATCAGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATTAt  >  1:749573/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                  
CGTCACTATGGCCTTGTAATGCAGCTTGTTTGTACCAGAAAAATGCCAGCGCATAGTCTTTTGCGACTCCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCTGATACCAGACAACCGCTTC‑TTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATTAT  >  NC_000913/676040‑676306

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A