Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F48 I1 R1	70	151.6	5072932	98.7%	5006983	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	783,577	G→T	A138S (GCA→TCA)	pnuC →	nicotinamide riboside transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	783,577	0	G	T	99.5%	689.8 / ‑3.5	193	A138S (GCA→TCA)	pnuC	nicotinamide riboside transporter
Reads supporting (aligned to +/- strand): ref base G (1/0); new base T (85/107); total (86/107)
Fisher's exact test for biased strand distribution p-value = 4.46e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.07e-01

Only 100 of 196 total aligned reads displayed.

AGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGATTCTGATGACGCGTAAGTATGTGG  >  NC_000913/783442‑783712

aGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGt                                                                                                                                     <  2:1068291/140‑1 (MQ=255)

  tCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTgtcagtca                                                                                                                                   >  2:1451971/1‑140 (MQ=255)

   cAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCAt                                                                                                                                  <  1:454999/140‑1 (MQ=255)

       aCGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATc                                                                                                                              >  1:1637623/1‑140 (MQ=255)

         gAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCAt                                                                                                                            >  2:1171015/1‑140 (MQ=255)

         gAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCAt                                                                                                                            >  1:1959331/1‑140 (MQ=255)

          gggCGGAGTTGAAAATTCGCTGATTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATg                                                                                                                           <  1:2121552/139‑1 (MQ=255)

          aGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATg                                                                                                                           <  1:1515493/140‑1 (MQ=255)

           ggCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGc                                                                                                                          <  1:2418885/140‑1 (MQ=255)

           ggCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGc                                                                                                                          >  2:1633512/1‑140 (MQ=255)

            gCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCa                                                                                                                         <  1:1769187/140‑1 (MQ=255)

               gAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGAGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGc                                                                                                                      <  2:1903579/140‑1 (MQ=255)

                 gTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCAt                                                                                                                    <  1:812830/140‑1 (MQ=255)

                 gTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCAt                                                                                                                    <  2:1678270/140‑1 (MQ=255)

                 gTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCAt                                                                                                                    <  1:1181309/140‑1 (MQ=255)

                 gTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCAt                                                                                                                    <  1:339055/140‑1 (MQ=255)

                       aaTTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGAt                                                                                                              <  1:1922867/140‑1 (MQ=255)

                        aTTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGAtt                                                                                                             <  1:469628/140‑1 (MQ=255)

                          tCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTAc                                                                                                           >  1:922961/1‑140 (MQ=255)

                          tCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTAc                                                                                                           >  1:1501950/1‑140 (MQ=255)

                            gCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAg                                                                                                         <  1:2233276/140‑1 (MQ=255)

                            gCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAg                                                                                                         >  2:1531233/1‑140 (MQ=255)

                            gCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAg                                                                                                         <  2:1368853/140‑1 (MQ=255)

                            gCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAg                                                                                                         >  2:1314892/1‑140 (MQ=255)

                                       ttGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCTAGCATTAGGATTACAGGTTGTGATGcc                                                                                              <  1:2056044/140‑1 (MQ=255)

                                        tGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCt                                                                                             >  1:879303/1‑140 (MQ=255)

                                         gCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTg                                                                                            <  1:1234320/140‑1 (MQ=255)

                                           cGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGaa                                                                                          <  1:2391053/140‑1 (MQ=255)

                                               ggCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGc                                                                                      >  2:1584241/1‑140 (MQ=255)

                                                  aCTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAAc                                                                                   >  2:696097/1‑140 (MQ=255)

                                                   cTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAAcc                                                                                  <  2:1753502/140‑1 (MQ=255)

                                                    tCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCg                                                                                 >  1:935831/1‑140 (MQ=255)

                                                    tCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCg                                                                                 >  1:1024884/1‑140 (MQ=255)

                                                    tCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCg                                                                                 >  1:2461633/1‑140 (MQ=255)

                                                    tCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCg                                                                                 >  1:1434037/1‑140 (MQ=255)

                                                    tCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCg                                                                                 >  1:1600031/1‑140 (MQ=255)

                                                    tCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCg                                                                                 >  2:249376/1‑140 (MQ=255)

                                                          ggTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCt                                                                           >  2:320454/1‑140 (MQ=255)

                                                           gTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCtt                                                                          >  2:26976/1‑140 (MQ=255)

                                                            ttGGCGGTTTGCGTTGTTTCGACTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCA‑TTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTc                                                                        <  1:2118064/140‑1 (MQ=255)

                                                                cGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTc                                                                        >  1:1019507/1‑137 (MQ=255)

                                                                  gTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGtt                                                                   >  2:2081919/1‑140 (MQ=255)

                                                                  gTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGtt                                                                   <  2:875672/140‑1 (MQ=255)

                                                                     tGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTg                                                                >  1:250858/1‑140 (MQ=255)

                                                                     tGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTg                                                                >  1:1823468/1‑140 (MQ=255)

                                                                     tGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTg                                                                <  1:1983879/140‑1 (MQ=255)

                                                                     tGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTg                                                                >  2:2221256/1‑140 (MQ=255)

                                                                      gCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTgg                                                               <  1:653040/140‑1 (MQ=255)

                                                                      gCGTTGTTTCGATTGGTCTGATGACGGTATTTATAAATCCAGTGTGTGCATTTTTGCCCCGCGTGGCAGTCATGCTCATGCAAGCATTAGGATTACAGCTTGTGATGCCTGAACTGCAACCGGACGCTTTACCGTTCTgg                                                               <  2:1215214/140‑1 (MQ=255)

                                                                         ttgttTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGAt                                                            <  1:510316/140‑1 (MQ=255)

                                                                         ttgttTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGAt                                                            <  2:665601/140‑1 (MQ=255)

                                                                             ttCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTcat                                                        >  2:1157876/1‑140 (MQ=255)

                                                                              tCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGTCCCGCGTGTCAGTCATGATCATGCAAGCATTAGGAGTACTGGTTGTGATGCCTGAACTGCATCCGGACGCTTTCCCGTTCTGGGATTcatg                                                       <  1:608954/140‑1 (MQ=255)

                                                                              tCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTcatg                                                       <  1:1451971/140‑1 (MQ=255)

                                                                              tCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTcatg                                                       <  2:1959331/140‑1 (MQ=255)

                                                                              tCGATTGGTATGATGATGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGTTCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTcatg                                                       <  2:2464706/140‑1 (MQ=255)

                                                                                  ttGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTcatgcatg                                                   <  1:894744/140‑1 (MQ=255)

                                                                                   tGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCatga                                                  <  2:922961/140‑1 (MQ=255)

                                                                                   tGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCatga                                                  <  2:784275/140‑1 (MQ=255)

                                                                                   tGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCatga                                                  <  2:533331/140‑1 (MQ=255)

                                                                                   tGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCatga                                                  <  1:2030374/140‑1 (MQ=255)

                                                                                   tGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCatga                                                  <  1:26976/140‑1 (MQ=255)

                                                                                     gTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCatgatg                                                <  1:976301/140‑1 (MQ=255)

                                                                                     gTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCatgatg                                                <  1:2081919/140‑1 (MQ=255)

                                                                                     gTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCatgatg                                                <  1:29817/140‑1 (MQ=255)

                                                                                      tCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCatgatgt                                               >  2:238629/1‑139 (MQ=255)

                                                                                      tCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCatgatgt                                               >  2:887772/1‑139 (MQ=255)

                                                                                      tCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATgg                                               >  1:2354092/1‑140 (MQ=255)

                                                                                               ggTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTtatcta                                      >  2:1043677/1‑140 (MQ=255)

                                                                                               ggTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTtatcta                                      >  1:575944/1‑140 (MQ=255)

                                                                                                gTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTtatctat                                     >  1:1068895/1‑140 (MQ=255)

                                                                                                gTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTtatctat                                     <  1:712321/140‑1 (MQ=255)

                                                                                                         aaTCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAAt                            >  2:1721499/1‑140 (MQ=255)

                                                                                                         aaTCCGGAGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAAt                            >  2:478418/1‑140 (MQ=255)

                                                                                                           tCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATgt                          >  2:2198112/1‑139 (MQ=255)

                                                                                                           tCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGa                          >  2:2345448/1‑140 (MQ=255)

                                                                                                           tCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGa                          >  1:1850654/1‑140 (MQ=255)

                                                                                                           tCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGa                          <  1:1563879/140‑1 (MQ=255)

                                                                                                           tCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGa                          >  2:372814/1‑140 (MQ=255)

                                                                                                           tCCGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGa                          >  2:1563879/1‑140 (MQ=255)

                                                                                                             cGGTGTTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGAtt                        >  2:182546/1‑140 (MQ=255)

                                                                                                               gtgtTTGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGATTCt                      >  1:382254/1‑140 (MQ=255)

                                                                                                                   ttGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGATTCtgatg                  <  1:1686153/140‑1 (MQ=255)

                                                                                                                   ttGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGATTCtgatg                  <  2:204350/140‑1 (MQ=255)

                                                                                                                   ttGCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGATTCtgatg                  <  1:478418/140‑1 (MQ=255)

                                                                                                                     gCATTTTTGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGATTCTGATGAc                >  2:1979179/1‑140 (MQ=255)

                                                                                                                         ttttGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGATTCTGATGACGCGt            <  1:217252/140‑1 (MQ=255)

                                                                                                                         ttttGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGATTCTGATGACGCGt            <  2:935831/140‑1 (MQ=255)

                                                                                                                         ttttGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGATTCTGATGACGCGt            <  2:1756512/140‑1 (MQ=255)

                                                                                                                         ttttGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGATTCTGATGACGCGt            <  2:869197/140‑1 (MQ=255)

                                                                                                                         ttttGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGATTCTGATGACGCGt            <  2:495269/140‑1 (MQ=255)

                                                                                                                         ttttGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGATTCTGATGACGCGt            <  1:1370354/140‑1 (MQ=255)

                                                                                                                          tttGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAAt                            <  1:1251989/123‑1 (MQ=255)

                                                                                                                          tttGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAAt                            >  2:1251989/1‑123 (MQ=255)

                                                                                                                          tttGACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGATTCTGATGACGCGTa           >  2:1386780/1‑140 (MQ=255)

                                                                                                                             gACCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGATTCTGATGACGCGTAAGt        <  2:409952/140‑1 (MQ=255)

                                                                                                                              aCCCGCGTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGATTCTGATGACGCGTAAGTa       <  2:2014211/140‑1 (MQ=255)

                                                                                                                                 cgcgTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGATTCTGATGACGCGTAAGTAtgt    <  1:2216193/140‑1 (MQ=255)

                                                                                                                                  gcgTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGATTCTGATGACGCGTAAGTAtgtg   <  1:1314892/140‑1 (MQ=255)

                                                                                                                                   cgTGTCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGAATGATGGTGTTATCTATCGTGGCAATGATTCTGATGACGCGTAAGTATGTgg  >  1:584858/1‑140 (MQ=255)

AGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGATTCTGATGACGCGTAAGTATGTGG  >  NC_000913/783442‑783712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A