Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 113 306.8 9564096 98.5% 9420634 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,723,642 C→G P152P (CCC→CCG)  U712_19195 → putative transporter ywcJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,723,6420CG99.4% 1192.3 / ‑5.1 314P152P (CCC→CCG) U712_19195putative transporter ywcJ
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (136/176);  minor base A (0/2);  total (136/178)
Fisher's exact test for biased strand distribution p-value = 5.07e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 325 total aligned reads displayed.

GACACCCTGTACCTGTGGATGTCAAGCTATGCCGGCAATTTGATCGGCGCCATTCTATTTGCCATTCTGATCAGCGCGACAGGGCTTTTTGAGGAGGCTTCTGTTCATTCCTTTTTGATTCATCTGGCAGAGCACAAAATGGAGCCGCCCGCTTCCGAACTGTTTTTCAGAGGGATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTTAAAGGGGAAGGGGCAAAGCTCTTTACCATGATGCTTTTCGTTTTCTGCTTCTTCATTTCCGGCTTCGAACA  >  CP006881/3723493‑3723788
                                                                                                                                                     |                                                                                                                                                  
gaCACCCTATACTTGTGGATGTCAAGCTATGCCGGAAATTTAATCGGCGCCATTCTGATTGCCATCCTGATCAGCGCGACAGCAAATTTTGTGGAGACTTCTGGACATTCCTTTTTGTTTCAATTGGCAGGGAAGAAAAAGGGGccgccc                                                                                                                                                    >  2:2333578/1‑150 (MQ=255)
     tctatACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGAACAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTAGCAGAGCACAAAATGGAGCCGCCGGCTTc                                                                                                                                               <  1:1400625/146‑1 (MQ=255)
     ccTATACTTGTGGATGCCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTCCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTc                                                                                                                                               <  2:3494201/150‑1 (MQ=255)
     ccTATACTTGTGGATGCCAAGCTAGGCCGGCAATTTAACCGGCGCCATTCTGTGTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTc                                                                                                                                               <  1:2198091/150‑1 (MQ=255)
      ctatACTTGTGTATGTAAAGCTTTCCAGGCAATTTAACCGGCGCCTTTCTGTGTGCCACCCTGAACAGCGCGACGGGATTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATCCATTTGCCAGAGCACAAAATGGAGCCGCCGGCTTcc                                                                                                                                              <  2:1865437/147‑1 (MQ=255)
      ctatACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGGGCCGCCGGCTTcc                                                                                                                                              >  2:726448/4‑150 (MQ=255)
        ttACTTGTGGATACCAAGCTATGCCGGCAATTTAATCGGCGCCATCCTGTTTGCCATCCTGATCGGGGCGACGGGACTTTTTGAGGACCCTTCTGTTCATCCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGa                                                                                                                                            <  1:3595064/149‑1 (MQ=255)
        atccttgtgGATGCAAAGCAAGGCCGGCAATTTAACCGGCGCCATTCTGTTTGCCATCCTGACCAGCGCGACGGGTCTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATCCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGa                                                                                                                                            <  1:909915/145‑1 (MQ=255)
         tACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGaa                                                                                                                                           >  2:2421041/1‑150 (MQ=255)
             tgtgGATGTCAAGCTGTGCCGCCATTTTAACGGCCGCCTTTCTGTTTCCCATCCTGACCAGCGCGCCGGGACTTTTTGAGGCGCCTTCTGTTCTTTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGt                                                                                                                                       <  2:448554/150‑1 (MQ=255)
             tgtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGt                                                                                                                                       >  1:1223753/1‑150 (MQ=255)
               tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGGGCACAAAATGGAGCCGCCGGCTTCCGCACTGttt                                                                                                                                     >  1:3019061/1‑150 (MQ=255)
                      caggCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGACCAGCGCGACGGGCCTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCagag                                                                                                                              <  2:1721984/147‑1 (MQ=255)
                        aGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGGGCACAAAATGGAGCCGCCGGCTTCCGGATTGTTTTTCAgggga                                                                                                                            >  2:484102/1‑149 (MQ=255)
                           tATGCCGGCATTTTAATCGGCGCCATTCTGTTTGCCTTCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTTTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATg                                                                                                                         <  1:2289165/150‑1 (MQ=255)
                           tATGCCGGCAATTTAATCGGCGTCATTCTGTTTGCCACCCTGACCAGCGCGACGGGACTTTTTGAGGACCCTTCTGTTCATTTCTTTTTTATTCTTTGGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATg                                                                                                                         <  1:3203995/150‑1 (MQ=255)
                           tATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATg                                                                                                                         <  1:2159101/150‑1 (MQ=255)
                             tGCCGGCATTTTACTCGGCGCCATCCTGTTTGCCTCCCTGATCAGCGCGACGGGCCTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCt                                                                                                                       <  1:4429739/150‑1 (MQ=255)
                                cGGCAATTTAATCGGCGCCATTCTGTCTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCtgtg                                                                                                                    <  1:1978304/150‑1 (MQ=255)
                                         aacgcgcgcCATTTTGTTTCCCACCCTGACCAGCGGGACGGGACTTTTTGGGGAGCCTCCTGTTCATTCCTTTTTGATGCATCTGGCAGAGCACAAAATGGGGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCt                                                                                                           <  1:263746/145‑1 (MQ=255)
                                          aTCGGCGCCATTCTCTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCtt                                                                                                          >  1:422489/1‑150 (MQ=255)
                                          aTCGGCCCCATTCTGTTTGCCATCTTAGTCAGGGCGCCGGGACTTTTTGAGGCCCCTTCTGTCCATCCCTTTTTGATTCTTTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCtt                                                                                                          <  2:4550015/150‑1 (MQ=255)
                                           tCGCCGCCTTTCTGTTTGCCATCCTGACCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTtg                                                                                                         <  2:1926574/150‑1 (MQ=255)
                                            cGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGCATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTtgt                                                                                                        >  2:1247297/1‑150 (MQ=255)
                                             ggCGCCTTTCTGTTTGCCATCCTGAGCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTtgtg                                                                                                       <  1:1132904/150‑1 (MQ=255)
                                             ggCGCCATTCTGTTTGCCATCCTGATCAGCGCTCCGGTCCTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTtgtg                                                                                                       <  2:1066691/150‑1 (MQ=255)
                                             ggCGCCATTCGGTTGGCCATCCTGAGCAGGGCGACGGGACTTTTTGAGGGGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTtgtg                                                                                                       <  1:1166050/150‑1 (MQ=255)
                                               cgcCATTCTGTTTGCCATCCTGACCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTtgtgtg                                                                                                     <  1:2854383/150‑1 (MQ=255)
                                                  cATTCTGTTTGCCAGGTTGCCCAGCGCGAGGGGATTTTTTGAGGAGCCTTCTGTTCATTCTTTTTTGATTCTTTTGGCAGAGCACAAAATGGACCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCt                                                                                                  <  1:450566/150‑1 (MQ=255)
                                                   aTTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTc                                                                                                 >  2:4160713/1‑150 (MQ=255)
                                                     cctgattGCCACCCTGACCAGGGCAGCGGGTCTTTTTGAGGAGCCTCCTGTTCGTTCCTCTGTGATTCATTCGGCAGAGCGCAAAATGGCGCCGCCGGCTTCCGAATTGTTTTCCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGc                                                                                               <  2:1686186/145‑1 (MQ=255)
                                                      ctgtttGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGcc                                                                                              >  2:3927899/4‑150 (MQ=255)
                                                        gtttGCCACCCTGATCAGCGCGACGGGTCTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCtt                                                                                            <  2:3523561/149‑1 (MQ=255)
                                                        gtttCCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCtt                                                                                            <  2:3584673/149‑1 (MQ=255)
                                                         tttGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGACCCCTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAGTGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCttt                                                                                           <  2:4035004/150‑1 (MQ=255)
                                                          ttGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATAGGTTTTCAGAGGACTGCGGTGCAATTGGCTTGTGTGCCTCGCCttct                                                                                          >  2:1177806/1‑148 (MQ=255)
                                                            gCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTc                                                                                        <  1:1631080/150‑1 (MQ=255)
                                                             ccATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCa                                                                                       <  1:317870/150‑1 (MQ=255)
                                                             ccATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCa                                                                                       >  2:2280122/1‑150 (MQ=255)
                                                             ccATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCa                                                                                       <  2:4316019/150‑1 (MQ=255)
                                                                tccTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGATTTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTc                                                                                    >  2:936217/3‑150 (MQ=255)
                                                                      tCAGCGCGCCGGGATTTTTTGAGGATCTTTCTGTACCTCCTTTTTTGATCCTATTGGCAGAGCCCAAATTGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGt                                                                              <  2:4260307/150‑1 (MQ=255)
                                                                      tCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGt                                                                              >  2:759563/1‑150 (MQ=255)
                                                                      caggcgcGGCGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGt                                                                              <  1:4739915/147‑1 (MQ=255)
                                                                       cAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGtc                                                                             >  2:1328533/1‑150 (MQ=255)
                                                                        aGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGtct                                                                            >  1:1906375/1‑150 (MQ=255)
                                                                          cgcgCCGGGACTTTTTGAGGCCCCTTCTGTTCATTCCTTTTTGATTCTTTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTctct                                                                          <  1:1691886/150‑1 (MQ=255)
                                                                           gggACGGGACTTTTTGAGGAGCCTTCTGTCCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTctctc                                                                         <  2:4705118/148‑2 (MQ=255)
                                                                             gACGGGACTTTTGGAGGAGCCTTCTGTCCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCACGCCTTTTTCATTCCAATGTCTCTCaa                                                                       <  2:34153/150‑1 (MQ=255)
                                                                               cgggacTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGGGCCTCGCCTTTTTCATTCCAATGTCTCTCAaag                                                                     >  2:3024398/6‑150 (MQ=255)
                                                                                gggtcTTTTTGGGGAGCCTCCTGTTCATTCCTTTTTGATTTATTTGGCGGAGCACATAATGGAGCCGCCGGCTCCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCCaagg                                                                    <  1:4693035/146‑1 (MQ=255)
                                                                                gggacTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCGTTTTTCATTCCAATGTCTCTCAaagg                                                                    >  2:3076610/5‑150 (MQ=255)
                                                                                gggacTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaagg                                                                    >  2:2858875/5‑150 (MQ=255)
                                                                                gggacTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaagg                                                                    <  1:291225/146‑1 (MQ=255)
                                                                                 ggacTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGGGCCCCGCCTTTTTCTTTCCAATGTCTCTCAaaggg                                                                   >  2:3765594/4‑150 (MQ=255)
                                                                                 ggacTTTTTGAGGAGCCTCCGGTCCATTCCTTTTTGATTCTTTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaaggg                                                                   <  1:3753276/147‑1 (MQ=255)
                                                                                  tccTTTTGGAGGCGCTTTCTTTTCATTCCTTTTTTCTTCATTTGGGAGAGCACAATTTGGATCCGCCAGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaagggg                                                                  <  1:4021172/148‑1 (MQ=255)
                                                                                  gacTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaagggg                                                                  <  1:1515917/148‑1 (MQ=255)
                                                                                    cTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaaggggaa                                                                >  1:4585502/1‑150 (MQ=255)
                                                                                     tttttGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaaggggaag                                                               <  1:3702485/150‑1 (MQ=255)
                                                                                      ttttGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaaggggaagg                                                              >  2:631587/1‑150 (MQ=255)
                                                                                      ttttGACGAGCCTTCTGTTCATTCCTTTTTGATTCATTAGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTCCAGAGGAAAGCTCTGCAATTGGCTGGTGTGCCTCCCCTCTTCCCTTCCACTCTCTCCCAaaggggaacg                                                              >  1:2046397/1‑148 (MQ=255)
                                                                                      tttgGAGGACCCTTCTGTTCATTCCTTTTTGATTCATGTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaaggggaagg                                                              <  1:4308571/150‑1 (MQ=255)
                                                                                      ttgtGAGGAGCCTTCTGCTCATTCTTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCGGGCTTCCGAATTGTTTTCCAGAGGAATGCTGTGCAGTTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaaggggaagg                                                              <  2:4209482/147‑1 (MQ=255)
                                                                                        ttGGGGAGCCTCCGGTTCATTCCTTTTTGATTCATTTGGCAGAGCAAAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaaggggaaggag                                                            <  1:395283/150‑3 (MQ=255)
                                                                                           aggagcCTTCTGTTCATTCCTTTTTGATTCATTTGACAGAGCACAAAATGGATCCGCCGGGTTCCGAATAGTTTTTCAGAGGCACGCTGTGCAATCGGCTTGTGTGCCTCGCCCTCCTCATTCCAGAGTCTCTCCAACGGGGAGGAGCaa                                                         >  2:395694/1‑150 (MQ=255)
                                                                                           aggagcCTTCTGTCCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCaa                                                         <  1:1834816/150‑1 (MQ=255)
                                                                                            ggagcCTTCTGTTCATTCCTTTTTGCTTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGGGGAAGGCTGTGCAAGGGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGCCTCTCAAAGGGGAAGGGGCaaa                                                        >  2:1609881/1‑150 (MQ=255)
                                                                                            ggagcCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCAGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCaaa                                                        <  1:567447/150‑1 (MQ=255)
                                                                                             gagcCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAg                                                       >  2:2973377/1‑150 (MQ=255)
                                                                                             gagcCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAg                                                       >  2:1297528/1‑150 (MQ=255)
                                                                                              agccTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGGATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGc                                                      >  1:959540/4‑150 (MQ=255)
                                                                                              agccTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGc                                                      >  2:3088143/4‑150 (MQ=255)
                                                                                              agccTTCTGTTCATTCCTTTTTGATCCTTTTGGCAGAGCACAAATTGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGc                                                      <  1:2765528/147‑1 (MQ=255)
                                                                                                  ttCTGTTCATTCCTTTTTGTTTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCtttt                                                  <  1:1079386/150‑1 (MQ=255)
                                                                                                   tCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGGGCCGCCGGCTTCCGAATTGTTTTTCAGAGGGATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTtttt                                                 >  1:509396/1‑150 (MQ=255)
                                                                                                     tGTCCATTCCTTTTTGATTCATTTGGCAGAGCACAAAAGGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTAc                                               <  1:746495/150‑1 (MQ=255)
                                                                                                       ctCATCCCTTTTTGATTCATTGGGCAGAGCACAAAATGGACCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCa                                             <  1:4373621/149‑1 (MQ=255)
                                                                                                         ctttCTTTTTTGATCCATTTGGCAGAGCACAAAGTGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCatg                                           <  1:2703001/148‑1 (MQ=255)
                                                                                                            tCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCatgatg                                        >  2:681230/1‑150 (MQ=255)
                                                                                                            tCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCatgatg                                        >  1:2407043/1‑150 (MQ=255)
                                                                                                            tCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCatgatg                                        >  2:2230722/1‑150 (MQ=255)
                                                                                                            tCCTTTTTGATTCATTGGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCatgatg                                        <  1:247708/150‑1 (MQ=255)
                                                                                                              cTTTTTGATTCATTGGGCAGAGCACAAAGTGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCt                                      <  1:3390927/150‑1 (MQ=255)
                                                                                                               tttttGATTCGTTGGACAGAGCACAAACTGGAACCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCtt                                     <  1:822503/150‑1 (MQ=255)
                                                                                                                 tttGATTCATTTGGCAGAGCACAAAATGGACCCGCCGGCTTGCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCtttt                                   <  1:3476102/150‑1 (MQ=255)
                                                                                                                  ttGGTTCTTTTGGCAGAGCACAAAATGGAGCCGCCGGCGTCCGAATTGTTTTTCAGAGGAATGCTGTGCATTTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTc                                  <  2:561263/150‑1 (MQ=255)
                                                                                                                   tGATTCTTTTGGCAGAGAAAAAATTGCTGCCGCCGGCCCCCGAATTGTCTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCACTCAAAGGGGAAGGAGCAAAGCTTTTTAACATGATGCTTTTCg                                 <  1:4118101/150‑1 (MQ=255)
                                                                                                                    gactCATTTGGCAGAGGACAAAATGGAGCCGCCGGCTGCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTCCGt                                <  1:2639333/147‑1 (MQ=255)
                                                                                                                    gATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGt                                >  2:1117834/1‑150 (MQ=255)
                                                                                                                            tGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTATTTACCATGGTGCTTTTCGTTTtcttct                        >  2:1355197/1‑150 (MQ=255)
                                                                                                                               cAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGcttct                     >  1:1717902/1‑150 (MQ=255)
                                                                                                                                 gagCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGcttcttt                   >  2:2122203/1‑149 (MQ=255)
                                                                                                                                   gcccaAAATGGACCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTAt                 <  2:2780624/147‑1 (MQ=255)
                                                                                                                                    cacaAATTGGGGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTAtt                <  2:4234241/150‑1 (MQ=255)
                                                                                                                                    cacaAAGTGGGTCCGCCGACCTCCGAATTGTTTCTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCGTTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTATTCTGCTTCTTTAtt                <  2:1509429/150‑1 (MQ=255)
                                                                                                                                       aaaaTGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTcc             >  2:3741881/1‑150 (MQ=255)
                                                                                                                                         aaTGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGGAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCgg           >  2:2649520/1‑150 (MQ=255)
                                                                                                                                             gAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTAATTCCGGCttt       >  2:1671508/1‑149 (MQ=255)
                                                                                                                                                ccgccggcTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGaa    >  2:3230141/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                  
GACACCCTGTACCTGTGGATGTCAAGCTATGCCGGCAATTTGATCGGCGCCATTCTATTTGCCATTCTGATCAGCGCGACAGGGCTTTTTGAGGAGGCTTCTGTTCATTCCTTTTTGATTCATCTGGCAGAGCACAAAATGGAGCCGCCCGCTTCCGAACTGTTTTTCAGAGGGATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTTAAAGGGGAAGGGGCAAAGCTCTTTACCATGATGCTTTTCGTTTTCTGCTTCTTCATTTCCGGCTTCGAACA  >  CP006881/3723493‑3723788

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A