Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F56 I20 R2 1958 92.1 3575798 91.1% 3257551 126.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 2,183,403 T→C E42E (GAA→GAG)  U712_10935 ← Uncharacterized protein ypiF

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068812,183,4030TC100.0% 448.9 / NA 135E42E (GAA→GAG) U712_10935Uncharacterized protein ypiF
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (72/63);  total (72/63)

Only 100 of 135 total aligned reads displayed.

CCCGCAAATCCCTAAGTCCTTGAACGGTTATTTCATTTCTATCAACATATGTATATGGGGGCAGTAAATATACCCGTCCCTTTAACTGCCTTTCCAGTTCTTCTGACAGAAGCTGCGTGAATTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCTTGTAAATAGTCCTTGGCATCAGTGATTCTCCACCTCATCGTTCTC  >  CP006881/2183282‑2183535
                                                                                                                         |                                                                                                                                    
 ccGCATATCCTTAAGCCCTTGAACGGTTATTTCATTTCTATCAACATATGTATAAGGCGGAAGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCcgccgc                                                                                                                     <  3:361388/138‑1 (MQ=255)
  cGCAAATCCTTCAGCCCTTGAACGGTTATTTCATTTCTATCAACATATGTATAAGGCGGAAGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCa                                                                                                                   <  4:165665/139‑1 (MQ=255)
     aaaTCCTTAAGCCCTTGAACGGTTATTTCATTTCTATCAACATATGTATAAGGCGGAAGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCAttt                                                                                                                >  5:14161/1‑139 (MQ=255)
          cttAAGCCCTTGAACGGTTATTTCATTTCTATCAACATATGTATAAGGCGGAAGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGACGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTaaaa                                                                                                           >  4:96669/3‑139 (MQ=255)
          cttAAGCCCTTGAACGGTTATTTCATTTCTATCAACATATGTATAAGGCGGAAGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTaaaa                                                                                                           >  4:102907/3‑139 (MQ=255)
             aaGCCCTTGAACGGTTATTTCATTTCTATCAACATATGTATAAGGCGGAAGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAAt                                                                                                          <  2:41089/137‑1 (MQ=255)
                  cTTGAACGGTTATTTCATTTCTATCAACATATGTATAAGGCGGAAGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGttatt                                                                                                   <  8:10656/139‑1 (MQ=255)
                  cTTGAACGGTTATTTCATTTCTATCAACATATGTATAAGGCGGAAGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGttatt                                                                                                   <  3:198141/139‑1 (MQ=255)
                  cTTGAACGGTTATTTCATTTCTATCAACATATGTATAAGGCGGAAGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGttatt                                                                                                   <  6:14161/139‑1 (MQ=255)
                   ttGAACGGTTATTTCATTTCTATCAACATATGTATAAGGCGGAAGTAAATATACCCGTCCCTTTAACTGCCTTTCATGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGttatt                                                                                                   >  4:33943/1‑138 (MQ=255)
                   ttGAACGGTTATTTCATTTCTATCAACATATGTATAAGGCGGAAGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGttatt                                                                                                   >  7:115644/1‑138 (MQ=255)
                   ttGAACGGTTATTTCATTTCTATCAACATATGTATAAGGCGGAAGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGttatt                                                                                                   >  5:137340/1‑138 (MQ=255)
                    tGAACGGTTATTTCATTTCTATCAACAAATGTATAACGAGGAAGTAAATATACACGTCCCTTTAACTGGCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTACCCTGTCTCCGCCGCCAATTTATAATGAttatta                                                                                                  >  1:196440/1‑138 (MQ=255)
                          gTTATTTCATTTCTATCAACATATGTATAAGTCGGAAGTAAATATAAACGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCATTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTa                                                                                           >  7:176584/1‑139 (MQ=255)
                           ttATTTCATTTCTATCAACATATGTATAAGGCGGAAGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTAt                                                                                          >  3:322663/1‑139 (MQ=255)
                           ttATTTCATTTCTATCAACATATGTATAAGGCGGAAGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTAt                                                                                          >  2:91640/1‑139 (MQ=255)
                             atttcatttcTATCAACATATGTATAAGGCGGAAGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATg                                                                                         <  7:380737/138‑1 (MQ=255)
                             atttcatttcTATCAACATATGTATAAGGCGGAAGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGt                                                                                        >  3:228548/1‑139 (MQ=255)
                                  atttcTATCAACATATGTATAAGGCGGAAGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGttaatt                                                                                   <  8:273481/139‑1 (MQ=255)
                                     tcTATCAACATATGTATAAGGCGGAAGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGttaattaa                                                                                 <  8:161498/138‑1 (MQ=255)
                                     tcTATCAACATATGTATAAGGCGGAAGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTtaattaat                                                                                >  7:260739/1‑139 (MQ=255)
                                        aTCAACATATGTATAAGGCGGAAGTAAATATACCCGTCCCTTTATCTGCCTTTCAAGTTCTTCTGCGAGCAGCTGCGTAAACTCGCCGTTCACCGCCGCCATGTTGAAAAGGTTATTATACCTTATGTtaatttatttt                                                                             >  6:285631/1‑136 (MQ=255)
                                         tCAACATATGTATAAGGCGGAAGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTa                                                                            >  8:50637/1‑139 (MQ=255)
                                             cATATGTATAAGGCGGAAGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGa                                                                         >  3:443902/1‑138 (MQ=255)
                                               tatGTATAAGGCGGAAGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAg                                                                      <  4:234846/139‑1 (MQ=255)
                                                        ggcggaaGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGTTATGACAGCGGTATCaa                                                             >  1:4872/7‑139 (MQ=255)
                                                        ggcggaaGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTAt                                                                >  1:120054/7‑136 (MQ=255)
                                                        ggcggaaGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTAt                                                                <  2:120054/130‑1 (MQ=255)
                                                        ggcggaaGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCaa                                                             >  3:323116/7‑139 (MQ=255)
                                                        ggcggaaGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCaa                                                             >  7:152047/7‑139 (MQ=255)
                                                          cggaaGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTAt                                                                >  6:175098/5‑134 (MQ=255)
                                                           ggaaGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGttatt                                                                                                   >  3:394103/4‑98 (MQ=255)
                                                           ggaaGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGttatt                                                                                                   <  4:394103/95‑1 (MQ=255)
                                                            gaaGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGttatt                                                                                                   <  8:185852/95‑1 (MQ=255)
                                                            gaaGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGt                                                          >  3:311269/3‑138 (MQ=255)
                                                            gaaGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGt                                                          >  4:97076/3‑138 (MQ=255)
                                                             aaGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGATAGAAGCTGCGGAAACTCGCCTTTCTCCTCCGCCATTTTAAAAAGGTTATTAACCCTTATGTTTATTAATGGTATGACAGCGGTATCAATGTaa                                                        >  1:222794/2‑139 (MQ=255)
                                                             aaGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAg                                                                      >  5:184837/2‑125 (MQ=255)
                                                             aaGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAg                                                                      <  6:184837/124‑1 (MQ=255)
                                                             aaGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTAt                                                                <  3:198624/130‑1 (MQ=255)
                                                             aaGTAAATATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTAt                                                                >  4:198624/2‑131 (MQ=255)
                                                                  aaTATACCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAATCTGAGTTAACTCGCCTTTCTACGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGAGGTATCAATGTAATCCtt                                                   <  7:171581/139‑1 (MQ=255)
                                                                    tataCCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAg                                                 <  4:228603/139‑1 (MQ=255)
                                                                      taCCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCt                                               <  1:52079/139‑1 (MQ=255)
                                                                       aCCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGttatt                                                                                                   <  5:347843/86‑1 (MQ=255)
                                                                       aCCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGttatt                                                                                                   >  6:347843/1‑86 (MQ=255)
                                                                       aCCCGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCtt                                              >  3:265089/1‑139 (MQ=255)
                                                                        cccGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCtt                                              <  4:323116/138‑1 (MQ=255)
                                                                        cccGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCtt                                              <  7:50637/138‑1 (MQ=255)
                                                                          cGTCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATg                                                                                                         <  4:428824/77‑1 (MQ=255)
                                                                          cGTCCCTTTAACTGACTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATg                                                                                                         >  3:428824/1‑77 (MQ=255)
                                                                            tCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTaaaa                                                                                                           <  2:143067/73‑1 (MQ=255)
                                                                            tCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAAt                                                                                                          <  5:311086/74‑1 (MQ=255)
                                                                            tCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAAt                                                                                                          >  6:311086/1‑74 (MQ=255)
                                                                            tCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAAt                                                                                                          <  5:226329/74‑1 (MQ=255)
                                                                            tCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAAt                                                                                                          >  6:226329/1‑74 (MQ=255)
                                                                            tCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATg                                                                                                         >  7:335820/1‑75 (MQ=255)
                                                                            tCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGttatt                                                                                                   >  5:152223/1‑81 (MQ=255)
                                                                            tCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGttatt                                                                                                   <  6:238190/81‑1 (MQ=255)
                                                                            tCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGttatt                                                                                                   >  5:238190/1‑81 (MQ=255)
                                                                            tCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGttatt                                                                                                   >  5:244157/1‑81 (MQ=255)
                                                                            tCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGttatt                                                                                                   <  6:244157/81‑1 (MQ=255)
                                                                            tCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGttaatt                                                                                   >  4:235824/1‑97 (MQ=255)
                                                                            tCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAg                                                                      >  3:335727/1‑110 (MQ=255)
                                                                            tCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAg                                                                      <  4:335727/110‑1 (MQ=255)
                                                                            tCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTa                                                                 <  3:43887/115‑1 (MQ=255)
                                                                            tCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTa                                                                 >  4:43887/1‑115 (MQ=255)
                                                                            tCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCTTGTaaa                                         >  5:415155/1‑139 (MQ=255)
                                                                            tCCCTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCTTGTaaa                                         >  6:367487/1‑139 (MQ=255)
                                                                            tCCCTTTAACTGCCATTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGttaatt                                                                                   <  3:235824/97‑1 (MQ=255)
                                                                              ccTTTAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCATTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCTTGTAAATa                                       >  8:414996/1‑139 (MQ=255)
                                                                                tttAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTTATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCTTGTAAATAGt                                     >  4:213147/1‑139 (MQ=255)
                                                                                tttAACTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCTTGTAAATAGt                                     >  4:359421/1‑139 (MQ=255)
                                                                                   aaCTGCCTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCTTGTAAATAGTCCt                                  >  1:197688/1‑139 (MQ=255)
                                                                                        ccTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGttatt                                                                                                   >  1:123271/1‑69 (MQ=255)
                                                                                        ccTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGttatt                                                                                                   <  2:123271/69‑1 (MQ=255)
                                                                                        ccTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATg                                                           >  8:146544/1‑109 (MQ=255)
                                                                                        ccTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCtt                                              >  1:400878/1‑122 (MQ=255)
                                                                                        ccTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCtt                                              <  2:400878/122‑1 (MQ=255)
                                                                                        ccTTTCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCTTGTAAATAGTCCTTGGCa                             >  1:61147/1‑139 (MQ=255)
                                                                                         cTTTCTAGTTCTTCTGAGAGTTTCTGCGTAAACTCGCCTTTCTCAGCCGGCTTTTTAAAATTGTTATTTTGCCTTATGTTAATTATTGGTATTACAGCGGTATCAATGTAATCCTTAGCTTGTAAATAGTGGTTGGCAt                            <  8:369566/139‑1 (MQ=255)
                                                                                          tttCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGttatt                                                                                                   <  5:188327/67‑1 (MQ=255)
                                                                                          tttCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGttatt                                                                                                   >  6:188327/1‑67 (MQ=255)
                                                                                          tttCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTa                                                                 <  8:364932/101‑1 (MQ=255)
                                                                                          tttCAAGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTa                                                                 >  7:364932/1‑101 (MQ=255)
                                                                                            tcaaGTTCTTCTGAGAGAAGCTGCGTAAACTAGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCTTGTAAATAGTCCTTGGCATc                           <  1:374840/134‑1 (MQ=255)
                                                                                              aaGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCTTGTAAATAGTCCTTGGCATCAGt                        <  1:106618/137‑1 (MQ=255)
                                                                                               aGTTCTTCTGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCTTGTAAATAGTCCTTGGCATCAGTGa                      <  5:367487/139‑1 (MQ=255)
                                                                                                  tcttctGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGttatt                                                                                                   >  7:376001/1‑59 (MQ=255)
                                                                                                  tcttctGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGttatt                                                                                                   <  8:376001/59‑1 (MQ=255)
                                                                                                   cttctGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTAt                                                                >  5:101607/1‑93 (MQ=255)
                                                                                                   cttctGAGAGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTAt                                                                <  6:101607/93‑1 (MQ=255)
                                                                                                         agaGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCTTGTAAATAGTCCTTGGCATCAGTGATTCTCCa               <  2:272012/134‑1 (MQ=255)
                                                                                                           aGAAGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCTTGTAAATAGTCCTTGGAATCTGTGATTCTCCACCTCa          >  4:418370/1‑139 (MQ=255)
                                                                                                           aGAAGCTGCGTAAACTCGCCGTTCTCCGCCGCCATTTTAAAATGGGTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCTTGTAAATAGGCCTTGGCATCAGTGATTCTCCACCTCa          <  1:404460/139‑1 (MQ=255)
                                                                                                              aGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCTTGTAAATAGTCCTTGGCATCAg                         <  3:367637/121‑1 (MQ=255)
                                                                                                              aGCTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCTTGTAAATAGTCCTTGGCATCAg                         >  4:367637/1‑121 (MQ=255)
                                                                                                                cTGCGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCTTGTAAATAGTCCTTGGCATCAGTGATTCTCCACCTCATCGtt     <  8:115644/139‑1 (MQ=255)
                                                                                                                   cGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCTTGTAAATAGTCCTTGGCATCAGTGATTCTCCACCTCATCGTtctc  <  3:96669/139‑1 (MQ=255)
                                                                                                                   cGTAAACTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCTTGTAAATAGTCCTTGGCATCAGTGATTCTCCACCTCATCGTtctc  <  3:102907/139‑1 (MQ=255)
                                                                                                                         |                                                                                                                                    
CCCGCAAATCCCTAAGTCCTTGAACGGTTATTTCATTTCTATCAACATATGTATATGGGGGCAGTAAATATACCCGTCCCTTTAACTGCCTTTCCAGTTCTTCTGACAGAAGCTGCGTGAATTCGCCTTTCTCCGCCGCCATTTTAAAATGGTTATTAACCCTTATGTTAATTAATGGTATGACAGCGGTATCAATGTAATCCTTAGCTTGTAAATAGTCCTTGGCATCAGTGATTCTCCACCTCATCGTTCTC  >  CP006881/2183282‑2183535

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A